mRNA_Ecto-sp13_S_contig8336.19698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8336.19698.1
Unique NamemRNA_Ecto-sp13_S_contig8336.19698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: D7FMB0_ECTSI (Similar to Solute carrier family 25 (Mitochondrial carrier citrate transporter), member 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB0_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 6.100e-69
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 MGPPAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYGLGA 324
            MGPPAHLKPNHKGKAVLAGGISGVVEIC+TYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLL+TP+G DKYGLGA
Sbjct:    1 MGPPAHLKPNHKGKAVLAGGISGVVEICMTYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLSTPEGGDKYGLGA 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A6U3C197_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3C197_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 4.440e-42
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 MGPPAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYGLG 321
            MGPPAHLKP HKGKA++AGGISG +EIC TYP+EY KT +QLS +P ++ G+V+  T+K+ G  G YRGLSSM+YFA PKAAIRFG FE CS +L   DGRD YGLG
Sbjct:    1 MGPPAHLKPKHKGKALVAGGISGALEICCTYPIEYTKTFQQLSTEP-LSMGNVVSRTLKSAGPLGMYRGLSSMLYFATPKAAIRFGGFETCSSMLVDKDGRDIYGLG 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: W7TKG4_9STRA (Solute carrier family 25 (Mitochondrial carrier citrate transporter) member 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKG4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.640e-37
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:   10 PAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYGLG 321
            P   KP HKGKAVLAGG+SG  EIC T+P EYVKTT+QLS  P V+   V+  T+   GF GFYRGLSSM+YFAAPKAAIRF +FEF SGLLT  +G DKYGLG
Sbjct:    3 PIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSPRP-VSVKQVISETMAERGFFGFYRGLSSMLYFAAPKAAIRFSSFEFFSGLLTDANGGDKYGLG 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A7S1VIB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIB4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.660e-35
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   22 KPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYGLG 321
            KP HKGKA++AG  +G+ EIC TYP EYVKT+ QL+  P VT G+V+  T    G  GFYRGL SMVYFAAPKAAIRF AFE CSGLL+ P+G D YGLG
Sbjct:    6 KPKHKGKALVAGATAGIFEICCTYPTEYVKTSMQLATRP-VTAGNVISTTFAEAGPVGFYRGLPSMVYFAAPKAAIRFAAFETCSGLLSGPNGEDIYGLG 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A7S2I9W3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I9W3_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 1.540e-31
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   22 KPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYG 315
            KP H GKA++AGGISG +EIC TYPLE+ KT  QLSK+      +V+RNT+ N G  GFYRGLSSMVYFA PKAAIRF +FE  S  LTT DG+  +G
Sbjct:    6 KPKHAGKAIVAGGISGGIEICCTYPLEFTKTVAQLSKEGGGAM-AVVRNTMANEGPIGFYRGLSSMVYFATPKAAIRFSSFEAASAALTTSDGKPMFG 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A0M0J9A5_9EUKA (Tricarboxylate transport mitochondrial n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J9A5_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 3.010e-31
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   10 PAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYG 315
            P   KP H GKA++AGGISG +EIC TYPLEY KT  QL K        V+R+T+K  G  GFYRGLSSMVYFA PKAA+RF AFE  S +L T DG+  +G
Sbjct:    3 PTGNKPKHAGKAIVAGGISGAIEICCTYPLEYTKTVAQLDKGSGGGAMKVVRDTLKTHGPLGFYRGLSSMVYFATPKAALRFSAFEAASDMLKTSDGKPMFG 104
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A6V3A8C4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A8C4_HETAK)

HSP 1 Score: 119 bits (298), Expect = 1.200e-30
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 MGPPAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDK---YGLGA 324
            MGPPAHLKP HKGKA+LAG ISGVVEICITYP+EY KT +QL+    ++   V++NT++ +G SG YRGLSSMVY A PKA +RF  FE  + +L    G  K    GLGA
Sbjct:    1 MGPPAHLKPKHKGKALLAGAISGVVEICITYPIEYTKTMQQLATT-KMSPIQVVQNTLRQSGPSGMYRGLSSMVYAAGPKAGVRFMGFEQVNSMLPNSLGPLKGFFAGLGA 110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A7S0END0_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0END0_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 5.460e-28
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   22 KPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTYGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGRDKYG 315
            KP+H GKAV+AGGISG VEIC TYP+E+ KT  QLS     T   V++NTV+  G  G Y+GL SMVYFA PKAAIRF  FE  S  +  PDG   +G
Sbjct:    7 KPSHAGKAVVAGGISGAVEICCTYPIEFTKTVLQLSTQKQ-TAMDVVKNTVRTRGVLGLYKGLDSMVYFATPKAAIRFSGFEAASNAMRAPDGSPMFG 103
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: A0A401NR62_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401NR62_SCYTO)

HSP 1 Score: 100 bits (249), Expect = 7.710e-25
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 PPAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVT----YGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGR 303
            P   +K  H GKA+LAGG++G +EICIT+P EYVKT  QL +  N       G  +R TV+  G  G YRGLSS++Y + PKAA+RFG FEF S  +    GR
Sbjct:   19 PAPKVKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERANPPRYKGIGDCVRQTVQGHGIKGLYRGLSSLLYGSIPKAAVRFGTFEFLSNQIRDAQGR 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Match: UPI00097D4DB5 (tricarboxylate transport protein, mitochondrial-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D4DB5)

HSP 1 Score: 100 bits (249), Expect = 1.340e-24
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   10 PAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVT----YGSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDGR 303
            PA  K  H GKA+LAGGI+G +EICIT+P EYVKT  QL +  N       G  ++ TV+  G  G YRGLSS+VY + PK+A+RFG FEF S       GR
Sbjct:   22 PAKAKLTHPGKAILAGGIAGGIEICITFPTEYVKTQLQLDEKANPPKYKGVGDCVKQTVQGHGVKGLYRGLSSLVYGSIPKSAVRFGVFEFLSNHAKDESGR 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8336.19698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMB0_ECTSI6.100e-6996.30Similar to Solute carrier family 25 (Mitochondrial... [more]
A0A6U3C197_9EUKA4.440e-4266.36Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W7TKG4_9STRA1.640e-3767.31Solute carrier family 25 (Mitochondrial carrier ci... [more]
A0A7S1VIB4_9STRA9.660e-3565.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2I9W3_9EUKA1.540e-3162.24Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0J9A5_9EUKA3.010e-3158.82Tricarboxylate transport mitochondrial n=1 Tax=Chr... [more]
A0A6V3A8C4_HETAK1.200e-3058.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0END0_9EUKA5.460e-2857.14Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A401NR62_SCYTO7.710e-2549.51Uncharacterized protein (Fragment) n=1 Tax=Scylior... [more]
UPI00097D4DB51.340e-2450.98tricarboxylate transport protein, mitochondrial-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8336contigEcto-sp13_S_contig8336:202..2754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score217.2
Seed ortholog evalue3.7e-54
Seed eggNOG ortholog2880.D7FMB0
Preferred nameSLC25A1
Model size324
KEGG koko:K04646,ko:K15100
KEGG TC2.A.29.7
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015137,GO:0015142,GO:0015238,GO:0015318,GO:0015711,GO:0015746,GO:0015849,GO:0015893,GO:0016006,GO:0016020,GO:0016021,GO:0016051,GO:0018130,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0035674,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046390,GO:0046483,GO:0046942,GO:0046943,GO:0046949,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0055086,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1903825,GO:1905039,GO:1990542,GO:1990546
Exons2
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-17_003620.1
Cds size324
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464104.0166056-CDS-Ecto-sp13_S_contig8336:201..3931681464104.0166056-CDS-Ecto-sp13_S_contig8336:201..393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8336 202..393 -
1681464104.0378242-CDS-Ecto-sp13_S_contig8336:2622..27541681464104.0378242-CDS-Ecto-sp13_S_contig8336:2622..2754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8336 2623..2754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8336.19698.1prot_Ecto-sp13_S_contig8336.19698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8336 202..2754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8336.19698.1

>prot_Ecto-sp13_S_contig8336.19698.1 ID=prot_Ecto-sp13_S_contig8336.19698.1|Name=mRNA_Ecto-sp13_S_contig8336.19698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MGPPAHLKPNHKGKAVLAGGISGVVEICITYPLEYVKTTRQLSKDPNVTY
GSVMRNTVKNTGFSGFYRGLSSMVYFAAPKAAIRFGAFEFCSGLLTTPDG
RDKYGLGA
back to top

mRNA from alignment at Ecto-sp13_S_contig8336:202..2754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8336.19698.1 ID=mRNA_Ecto-sp13_S_contig8336.19698.1|Name=mRNA_Ecto-sp13_S_contig8336.19698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2553bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8336:202..2754- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACCTCCTGCGCACTTGAAGCCGAACCACAAGGGCAAAGCCGTGCT
CGCCGGAGGTATCTCTGGTGTGGTGGAGATTTGCATAACGTACCCTCTCG
AGTATGTCAAGACCACCCGCCAGCTTAGCAAGGTGAGGACGTAATAGAGG
AAGGAGGGAGAGGACAGGGCACGAATCCTTTCTCACGTGCGTACTTGACC
ACTCGCACCCGCCAGCGCCTGGTGTGCATCATGGCCTCGTTTCGCGTGGA
GGAGTTTTTTGTGCCTTTTGATCGAAGTAATTTTTCCCTTTTCACGTGTG
TGCTGCGTATGACGTGTGCTGGTGTCATCTGTCTCTTGAAACGAATACGC
CAGAGCTCTCCGCCGTAGGTGTTACAGCTCTCCCGTCCCGAGTGCCGGTC
GTGTGCAACTGTTGTCGGGCAGCGACATCCTGACTGAGCTCCTCTGTCTT
GCCAGTGATGCATTGCACGGAACACACCTCCTGTACATGCCCGACACCTG
TGCCCAACAAGACGCGCAGAGCACGGTTATCATTTGCGCACACGTTCGTA
CACGCAAGTCAATTATGGCGCGTGCATGCGTTGCATACATGCATATGTGT
ACGTACTCCGGAAGTAGGACGCGCCTTCTCCTTTTGCTGAGAGGAAAGTT
CCACGGAAGAGAGAAAGCTTTTTGCGGATTGCTACTCTCTACACAGTCGC
TGGGTACCATCAAACGCCTTGGGTACCAGGCAGAGCTGCCGAGCTATGTA
GCCATCTATGCATCTGACCGCTGCTGCTGCTCGTGCTGGGGTAAAAGAGT
CCCGTTGTCCCGTTTTTTTTTTGTTTTTGCACCGCTGAGTGATTGGTCCA
AAGTGTCGGTTAGTGTCACGTCAAGGTATCCACAACGTACTCTTGGTGCC
TTCCTTGTACGCACACACGGGAGGCGGCAGGGCATCGGGGGGGGGGGTCT
GAAAACGCCTAGCCCGCCAGCATGTCTTGGGCACGCATAGCCAGGATGCC
TTGTATTGCATCCCGCAGTCACCTCCAATTCTGAACAGTCTGTTCACTCC
TGCTACCAGGTGATTACAATCAAGGGGAGTCGTGAAGATGTCTTGTATCT
GTACTTTCGTAATATGCAAACGTGTGTCGTGAGCACAACAGCAGTCGTGA
GCACAACAGCATACCACTCGCGCAAAAACAACAAATACTGCTGTGTAGAT
AGTAGCCCACAACATGCCCCAGCTGTCTTGCTGACCCGCGGCACAGACAT
CACTGCTGAGGGCGACGGGATCAAGGCGTACGAAGCACCGGCGTTCCATC
TAATGTTGAGCACGAACGGTGTTTCTTTTTTCTTCCACTCACTGCCGTAA
GAACTTGATTTCAACACATCCCCTTCGACTGCTGTGGTTAGACTATACTC
GAACGAGATGTCTATCTGTATCCTTAACTTCTTCTTTTGTTGAAGCCTAA
TGGACCAAACACCCGCTCGTTATGTACATGCCTACTCGCTGGGGTTACCT
GCACAGCAAGAACATGCGTCTTTTTTTCAAGGAAGCTACATCTGCACTTC
GTTCTGTTTTCTTGGCGCCGTTGGTGCTAAATTCTGCTGTGATCGTTTCA
TGTGCCGAGACGCCACCAGGACTTGTACTTGCCGGAGTCTCTCGAGATAG
TAATGATGCACGTCACCGACGTCAAACGTACCATGCTTGCCCCCCTCCAC
CGAGGTGGTGGTGCAACCCGACTTTCACTGATAATACACAATCACGAAAA
CGGTCTATCCGTTCGAGATAATACCCCAGTCGAACGGAATGTGTCTTTGC
ATTGCAGGGCGTGGGGAAAGGGACCTGCTGGTACTGGGGCCTCATTTTGA
GAGTGTTCAACTCAACCGTGTTCACTCTGAAGTATCGGTCCCTCAAGCGG
TGTGTATGCCCTGGCCTGTGGTTCCCGGATGATGACAACTTCAAGTCTTG
CTGCACGCGATATGCACATATACGTTAAACGATCCAAATCTACTTGTCTC
AAGTGTCTGGGGGCTCATGCACATATATCTTTCCGCCGCCGCTCCATGTT
GCGTGATTATGAATGTGGGCGGAACTTAGAAGGGAACGATTCCTTCTAGA
AGGTTCGGGGAGATATAACTCCCCGCCGAAGGGTAAAACAGGGGACATGA
TCTAGTAGTAGCCCTTGCTTGAACAGCGGAACCGTCCCCCACTGTTGACA
GTCCTCTACCTTTACCGCTGGCAGCAGCAGCAACAGCTGCAGTTCCGCAC
GAGTAAATGACAAGCGAGTTCTTGACGGGTCTTCCAGATTGCGCCACGCG
TGCATGTCCTTACACCCATACCCACCCCGCCCCACTCCCGTCCCGCCTCA
TGCCTCGAAAGGACCCGAATGTGACGTACGGGTCCGTAATGAGAAATACG
GTGAAAAATACGGGATTTTCCGGGTTCTACCGCGGTCTTTCTTCGATGGT
CTACTTTGCCGCGCCCAAGGCCGCCATCCGTTTCGGCGCCTTCGAGTTCT
GCTCCGGGCTGCTGACCACGCCCGACGGGAGAGACAAGTACGGCCTGGGA
GCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8336:202..2754-

>mRNA_Ecto-sp13_S_contig8336.19698.1 ID=mRNA_Ecto-sp13_S_contig8336.19698.1|Name=mRNA_Ecto-sp13_S_contig8336.19698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8336:202..2754- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACCTCCTGCGCACTTGAAGCCGAACCACAAGGGCAAAGCCGTGCT
CGCCGGAGGTATCTCTGGTGTGGTGGAGATTTGCATAACGTACCCTCTCG
AGTATGTCAAGACCACCCGCCAGCTTAGCAAGGACCCGAATGTGACGTAC
GGGTCCGTAATGAGAAATACGGTGAAAAATACGGGATTTTCCGGGTTCTA
CCGCGGTCTTTCTTCGATGGTCTACTTTGCCGCGCCCAAGGCCGCCATCC
GTTTCGGCGCCTTCGAGTTCTGCTCCGGGCTGCTGACCACGCCCGACGGG
AGAGACAAGTACGGCCTGGGAGCG
back to top