mRNA_Ecto-sp13_S_contig8328.19689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8328.19689.1
Unique NamemRNA_Ecto-sp13_S_contig8328.19689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8328.19689.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 1.920e-181
Identity = 329/342 (96.20%), Postives = 333/342 (97.37%), Query Frame = 1 
Query:    1 AAGTDRASLVVEAVSALLECGRESVASTCMLSHGLDLYYNKDVEAEAGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGTNERASGLAGRRIVGDAVVVLVGGGMGHGAAGSGDVDGDGAANSDRTCNPLRLREELMRERMQPRPSIEEPSEAVKAAVKRGGGSALLSETLLPRLAGRLASDALMGGSVPLARSEERSPPLFLFDGGHLCAAMHGAGINLRYLPMLRRSLGWEHEGIRQLIAAEMLARTAKHILACRLRHSRVTMGIPDEVAMPALYSDERLRAVARLMLNAVLFRTYSTDDSSGKMITSAGVAAPGHGQPPPSAREAGDGLFMST 1026
            AAGTDRASLVVEAVSALLECGRESVAS CMLSHGLDLYYNKDVEAEAGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APGTNERASGLAGRRIVGDAVVVLVGGGMGHGAAGSGDVDGDG AN DRTCNPLRLREELMRERMQPRPSIE PSEAVKAAV+RGGGSALLSETLLPRLAGRLASDALMGGSVPLARSEERSPPLFLFDGGHLCAAMHGAGINLRYLPMLRRSLGWEHEG RQLIAAEMLARTAKHILACRLRHSRVTMGIPDEVAMP+LYSDERLRAVA LMLNAVLFRTYS+DDSSGKM+TSAGVAAPGHGQPPPS REA DGLFMST
Sbjct:  581 AAGTDRASLVVEAVSALLECGRESVASACMLSHGLDLYYNKDVEAEAGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-APGTNERASGLAGRRIVGDAVVVLVGGGMGHGAAGSGDVDGDGEANGDRTCNPLRLREELMRERMQPRPSIEAPSEAVKAAVERGGGSALLSETLLPRLAGRLASDALMGGSVPLARSEERSPPLFLFDGGHLCAAMHGAGINLRYLPMLRRSLGWEHEGNRQLIAAEMLARTAKHILACRLRHSRVTMGIPDEVAMPSLYSDERLRAVAHLMLNAVLFRTYSSDDSSGKMVTSAGVAAPGHGQPPPSGREARDGLFMST 921
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BLAST of mRNA_Ecto-sp13_S_contig8328.19689.1 vs. uniprot
Match: A0A6H5L4V6_9PHAE (Clu domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V6_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.850e-71
Identity = 165/183 (90.16%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 AAGTDRASLVVEAVSALLECGRESVASTCMLSHGLDLYYNKDVEAEAGDGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGTNERASGLAGRRIVGDAVVVLVGGGMGHGAAGSGDVDGDGAANSDRTCNPLRLREELMRERMQPRPSIEEPSEAVKAAVKRGGGSALLSETLLPRLAG 549
            AAGTDRASLVVEAVSALLEC RESVAS CMLSHGLDLYYNKDVEA A DG A       XXXXXXXXXXXXXXXXXXXXX  AP TNERASGLAGRRI+GDAVVVLVGGGMGHGAAGSGDVDGDGAAN DRTCNPLRLREELMRERMQPRPSIEEPSEAVKAAV+RGGGSALLSETLLPRLAG
Sbjct:  928 AAGTDRASLVVEAVSALLECSRESVASACMLSHGLDLYYNKDVEAGAEDGLAVASSLDGXXXXXXXXXXXXXXXXXXXXX--APVTNERASGLAGRRIMGDAVVVLVGGGMGHGAAGSGDVDGDGAANGDRTCNPLRLREELMRERMQPRPSIEEPSEAVKAAVERGGGSALLSETLLPRLAG 1108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8328.19689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS90_ECTSI1.920e-18196.20eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4V6_9PHAE1.850e-7190.16Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8328contigEcto-sp13_S_contig8328:2900..6569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score567.8
Seed ortholog evalue3.5e-159
Seed eggNOG ortholog2880.D8LS90
Model size1027
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-12_004400.1
Cds size1026
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8328.19689.1prot_Ecto-sp13_S_contig8328.19689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8328 2900..6568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464103.1030853-CDS-Ecto-sp13_S_contig8328:2899..32721681464103.1030853-CDS-Ecto-sp13_S_contig8328:2899..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 2900..3272 +
1681464103.1148925-CDS-Ecto-sp13_S_contig8328:3657..38311681464103.1148925-CDS-Ecto-sp13_S_contig8328:3657..3831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 3658..3831 +
1681464103.1244664-CDS-Ecto-sp13_S_contig8328:4610..47561681464103.1244664-CDS-Ecto-sp13_S_contig8328:4610..4756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 4611..4756 +
1681464103.1346385-CDS-Ecto-sp13_S_contig8328:5478..56131681464103.1346385-CDS-Ecto-sp13_S_contig8328:5478..5613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 5479..5613 +
1681464103.144922-CDS-Ecto-sp13_S_contig8328:5906..59831681464103.144922-CDS-Ecto-sp13_S_contig8328:5906..5983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 5907..5983 +
1681464103.1566648-CDS-Ecto-sp13_S_contig8328:6447..65681681464103.1566648-CDS-Ecto-sp13_S_contig8328:6447..6568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8328 6448..6568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8328.19689.1

>prot_Ecto-sp13_S_contig8328.19689.1 ID=prot_Ecto-sp13_S_contig8328.19689.1|Name=mRNA_Ecto-sp13_S_contig8328.19689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
AAGTDRASLVVEAVSALLECGRESVASTCMLSHGLDLYYNKDVEAEAGDG
AAAASSLDGGGSGGGGGGSRHLLQNGGGGGSAAPGTNERASGLAGRRIVG
DAVVVLVGGGMGHGAAGSGDVDGDGAANSDRTCNPLRLREELMRERMQPR
PSIEEPSEAVKAAVKRGGGSALLSETLLPRLAGRLASDALMGGSVPLARS
EERSPPLFLFDGGHLCAAMHGAGINLRYLPMLRRSLGWEHEGIRQLIAAE
MLARTAKHILACRLRHSRVTMGIPDEVAMPALYSDERLRAVARLMLNAVL
FRTYSTDDSSGKMITSAGVAAPGHGQPPPSAREAGDGLFMST
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mRNA from alignment at Ecto-sp13_S_contig8328:2900..6569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8328.19689.1 ID=mRNA_Ecto-sp13_S_contig8328.19689.1|Name=mRNA_Ecto-sp13_S_contig8328.19689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3670bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8328:2900..6569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGGAACGGACCGGGCGAGCCTGGTTGTGGAGGCCGTGTCGGCCTT
GCTGGAGTGCGGCCGAGAGAGCGTGGCCTCGACGTGCATGCTTTCGCACG
GGCTGGACCTCTACTACAACAAGGACGTCGAGGCCGAGGCGGGGGACGGG
GCGGCGGCGGCATCTTCTCTCGACGGCGGTGGCAGCGGTGGCGGCGGCGG
TGGATCGAGGCACCTCCTGCAGAACGGCGGCGGCGGCGGTAGTGCCGCTC
CCGGCACGAACGAGCGTGCGAGCGGGCTTGCCGGGAGGAGGATCGTGGGC
GACGCCGTAGTGGTGCTAGTGGGCGGTGGCATGGGGCACGGGGCGGCTGG
TTCCGGCGACGTGGACGGGGACGGTGAGAGAGATATCTGGCCGAAGAAGC
CGCCGAGCCGGAGTTGATGTTTTGCTGCTGCTGTGCTGTTTGTTCCTGAT
GCTTCTATCTGCCGCTACCGCTGTGTTTTTTTTTTTTTGTCCCTCTCTCT
GGGATGTGATTTGAATCGTCTCATGTCGCATAACGCTTGCTTAGTCGTCA
TTTCCCACAAAATGCGCCTCCGGACGACAAAGTGTATCGCTTCTCGACCG
CTGCTTGTGTTGTGCCAAACGATCGGAGCAGCCGACTCGCGTATGTGCTG
ACCGAGGGCGCTGAATGCTTTTCTTGTGCTGGGTGGCTCGTTGTGTCGGC
GTGCGCTCGTTTTTCTTTCCCTTTTTTTCCGCGTGGGGACGAATGGACGC
TGAGATAGGTGCGGCGAACAGCGACAGGACTTGCAACCCGCTGCGGCTGA
GGGAGGAGCTCATGAGGGAGCGGATGCAGCCGCGGCCGTCGATAGAGGAA
CCGTCGGAGGCGGTGAAGGCGGCGGTTAAGCGTGGGGGGGGAAGCGCGCT
TCTGTCGGAGACTCTGCTTCCGCGGTTGGCGGGTGAGTGAAAAGGAAGGG
AGGTCACTTGCAATAAAAAAAATCTTAGAATTTTCACTTCTGCTGTCGAT
TTGTTAAGCGCTAAACGAGACGCCGTGTGGGCAAGAGAGGGAGGCGGTAG
TTCTGCCTGCAAGGTGCACGCGATTGGGGCTCGGCTTGTCTACTCCGCCG
TGCGGCTGGCTGCTTTTTCGGGTTCGCTGTTTTGTCGTCTGGTTGTCGCC
CGCTTCGCTGTCTGTGGTTGTTTCCACCTGCCTCTGTCCATGTTCTACCG
TAGGTTCCATAAGATGCCAACACTCCCTGTGCCGAAATTCAAACCTGTGC
TATTGCACGACGAAGACGATCCGGAAATAGAAAATGATGTATTTTCAGAA
AGCTCTCGACGAGATTTCTAGGCCGCCGGCTCCGGCACCGCCACTCCTTC
TGCTGTGGAGTAACCGAGCTTTGGAAATCGGTCCAGGGGTATGATATCTC
ATGCAACCTACGGTATCTCCAGAAGATGGCAGAGGAAACGCGCTTGTGCT
TGCCACACACCTATTTCGTCCAGCTTGAAGAAGAAGAGAAGCAATGGAGC
CCGGAATGATGCGGGTTTTCAACCACGGCCACCAACCTATACCTACATCT
ATGTGCCTAACCCCAGCCCTTTGTTTTTTTGCAAGAATCGCCGTTTTTCA
GGTGGGGAGGCGTATGTACGAACACTCACGATTCCCGCTCGTTCACTCTT
AATTGTTTTTCGGGTGTGTGGCTCGCCCCGCAACGTGTTCGTCGTGGTTA
TTTATCTTCAGGCCGCCTGGCGAGCGACGCGTTGATGGGCGGCTCTGTTC
CTCTGGCGCGGTCGGAGGAGAGGAGCCCGCCCCTGTTCCTATTCGACGGG
GGGCACCTGTGTGCGGCCATGCACGGGGCGGGGATCAACCTCCGGTACCT
TCCGATGGTGAGAGAAAGAGGCAGAGAGAAGGAGACAGACAGACAGATGG
ACAACACAGACAGACAGACAGCACAGAAAGAGGGGGGGGTAGAGAGTTAA
TGAAAGAGAGAGATGGGGAGAGACAGACGGACAGAGAGGCCTTCAGTCGA
CGCTGTGTAACCTTCGGCCTCTCCACCAAGAACCCACACCCAGTCGATCC
CTACAGGTTCGGCAACACCAGCGGTGTTTTTTGAGGGGGGAAGGGGCGGG
TCTTGCAACGGTGCTGTTGTACAGGCAAAGTATGATATACGTCTTGCAGA
CGTACTGGTGACACGAAAAAAACACTCTCCGACACCCCACTCCACTCCAC
TCCACTCTACCCCTCAACAGCAGTCGCGTGGCTTTCAAGAATGGCACGGT
CTTTCTGTCGCCAAACGATAGCCGTGCACCTTTTCTATGGGTGAAAATAT
TGATGTTCGCTCTTGGTACCATCCCGCCTCTCTACTCTACCCCCTCCTTC
CTCCATCACACCATCGCACAACAATTTAACTTCGTTCTCACTTCACCCGG
CAGTTTTTCTGCGGTCAACATGATGCCAATGGGTGTCACGTTATCCTCAA
TTTCCTCCATTTTTTTGTAACACCACGTGGGCATCAACTTTGGTGCCATA
CGGATCGTTCGAATGACGTGTTGCGGTCGTGTTGCGTGTGTCGCGCCTGG
TCTTGTTCTTGTTCGGCCCTGGGGCACAGCTCCGGAGATCGTTGGGCTGG
GAGCACGAGGGCATCCGCCAGCTGATCGCCGCGGAAATGCTGGCTCGGAC
CGCCAAGCACATCCTGGCTTGCCGCCTGCGGCACTCCCGCGTTACCATGG
GAATACCAGACGAGGTACAGTAAAGTATACCCGCGCACGACTGTCTCACC
TAGGCCCATTGGTGGCTTCAATGCCCCTGCTCGCTTGGTCATTGGTTGTG
CTTGTCCCCACGGTCGCTTTGGTGCAGCCAACACCAAAACCTTCTAGCGG
CGCCTCGTTTTCTCTGCTGCACGTTTACGCATCAGTCTTGCTCTCTCTCT
CTCCCCCTCTCCTTGTTTGGAACTACCGGCAACGTTCATTGATTCCATTT
CTTCTTTTTCTTTTTTCCGTTCTGTTTGGTCTGTTTGGTCTCTCATCAAT
GGTCCAGGTTGCAATGCCAGCCTTATACTCCGACGAGCGGCTTCGCGCGG
TGGCTCGCCTTATGCTCAACGCTGTCCTATTCAGGTGCCCCTACGTGTGT
ATCCGTCGCGCTTGCGACATTCGGCACAAGTGTTTTCAAAAGGCACCTGT
GATTTTGGGTTCTCGACGGATTCTCTTTACTCCCGTCTGGTCGTTGTGTT
TCTTCGTGGCTTTTGGGAGGTGCACGTATCGGACTTGTTCGTTTTTATTC
GTTTTTATTCGCGACATCGACCTTTGACAAAAGCCTCATACCCCTTCTGT
TGAGCGCTTGGGGGGGCGGGGGGTTTCTTCCGCCCTGGGTCTTCTCTCCT
CGCCCGTCAGGGAAGAAACCCTTTTCGGGTGATGAGGCGTGTGAACCCCC
GTACCCCCCCTCAGCCCCACCCGCGTAACGTATGCGGTCGTTCTCGTTTG
GCATGATGTACACCCGCACACTCGTGTATCGCTCGCACGGCCACGCTGAT
GTTTACCCGCTGCCGCACTCGGCCTCCGCGTCATTTGTTTGTCCTCAGGA
CGTACTCCACGGACGATTCTAGCGGGAAGATGATCACTTCCGCCGGCGTG
GCCGCTCCGGGACACGGGCAGCCCCCGCCCTCAGCGCGCGAGGCCGGGGA
TGGGCTCTTCATGAGCACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8328:2900..6569+

>mRNA_Ecto-sp13_S_contig8328.19689.1 ID=mRNA_Ecto-sp13_S_contig8328.19689.1|Name=mRNA_Ecto-sp13_S_contig8328.19689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8328:2900..6569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGGAACGGACCGGGCGAGCCTGGTTGTGGAGGCCGTGTCGGCCTT
GCTGGAGTGCGGCCGAGAGAGCGTGGCCTCGACGTGCATGCTTTCGCACG
GGCTGGACCTCTACTACAACAAGGACGTCGAGGCCGAGGCGGGGGACGGG
GCGGCGGCGGCATCTTCTCTCGACGGCGGTGGCAGCGGTGGCGGCGGCGG
TGGATCGAGGCACCTCCTGCAGAACGGCGGCGGCGGCGGTAGTGCCGCTC
CCGGCACGAACGAGCGTGCGAGCGGGCTTGCCGGGAGGAGGATCGTGGGC
GACGCCGTAGTGGTGCTAGTGGGCGGTGGCATGGGGCACGGGGCGGCTGG
TTCCGGCGACGTGGACGGGGACGGTGCGGCGAACAGCGACAGGACTTGCA
ACCCGCTGCGGCTGAGGGAGGAGCTCATGAGGGAGCGGATGCAGCCGCGG
CCGTCGATAGAGGAACCGTCGGAGGCGGTGAAGGCGGCGGTTAAGCGTGG
GGGGGGAAGCGCGCTTCTGTCGGAGACTCTGCTTCCGCGGTTGGCGGGCC
GCCTGGCGAGCGACGCGTTGATGGGCGGCTCTGTTCCTCTGGCGCGGTCG
GAGGAGAGGAGCCCGCCCCTGTTCCTATTCGACGGGGGGCACCTGTGTGC
GGCCATGCACGGGGCGGGGATCAACCTCCGGTACCTTCCGATGCTCCGGA
GATCGTTGGGCTGGGAGCACGAGGGCATCCGCCAGCTGATCGCCGCGGAA
ATGCTGGCTCGGACCGCCAAGCACATCCTGGCTTGCCGCCTGCGGCACTC
CCGCGTTACCATGGGAATACCAGACGAGGTTGCAATGCCAGCCTTATACT
CCGACGAGCGGCTTCGCGCGGTGGCTCGCCTTATGCTCAACGCTGTCCTA
TTCAGGACGTACTCCACGGACGATTCTAGCGGGAAGATGATCACTTCCGC
CGGCGTGGCCGCTCCGGGACACGGGCAGCCCCCGCCCTCAGCGCGCGAGG
CCGGGGATGGGCTCTTCATGAGCACG
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