mRNA_Ecto-sp13_S_contig8327.19687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI) HSP 1 Score: 596 bits (1536), Expect = 5.430e-209 Identity = 299/321 (93.15%), Postives = 309/321 (96.26%), Query Frame = 1
Query: 142 MNSEQNDENPFNEFSLGASSSGAGPSSGVARARPAAARLLMDSLDSKPVKKMRKSTGAKGQTTAKGLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHR 1104
M+ EQNDENPFNEF+LGAS SG+GP GV RARPAAARLLMDSLDSKPVKKMR STGAKGQ+TAKGLVEKY RSPGEPEWPLRLII+GHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIP GFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRL AHAERAAATVAASKS PAEPAT+RGTDSTSAAGKGADQGVATA TIKA+IE+G PRIIAFAGKRQWEELFFDASAKDKA+TKGGK+GPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHR
Sbjct: 1 MSLEQNDENPFNEFALGASPSGSGPIPGVTRARPAAARLLMDSLDSKPVKKMRTSTGAKGQSTAKGLVEKY-RSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHR 320
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA) HSP 1 Score: 203 bits (516), Expect = 9.160e-57 Identity = 111/244 (45.49%), Postives = 139/244 (56.97%), Query Frame = 1
Query: 337 GLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQ 1068
GL EKY G+PE PLRL+++GHNPS AW GHYY NPSNRMW LL + IIP G+TA +D+ CP T G+GFTD+G+ PGT S++F LH+WRR Y RL++HA RA A P+I+AF GKRQ+ ELFFD+ A KS +GLQ A RP G+PF A T++FV+ SSSGAAAM+N ARE PY++L Q
Sbjct: 93 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAMSNAAREMPYQELAQ 277
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.120e-55 Identity = 111/244 (45.49%), Postives = 139/244 (56.97%), Query Frame = 1
Query: 337 GLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQ 1068
GL EKY G+PE PLRL+++GHNPS AW GHYY NPSNRMW LL + IIP G+TA +D+ CP T G+GFTD+G+ PGT SS F LH+WRR Y RL++HA RA A P+I+AF GKRQ+ ELFFD+ A KS +GLQ A RP G+PF A+ T++FV+ SSSGAAAM+N ARE PY++L +
Sbjct: 196 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAE 380
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB) HSP 1 Score: 189 bits (480), Expect = 5.360e-51 Identity = 110/268 (41.04%), Postives = 140/268 (52.24%), Query Frame = 1
Query: 283 PVKKMRKSTGAKGQTTAKGLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDC-PITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELF-FDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLK 1080
PV+K ++ A +KGL EK + PLRLI+IGHNPSE AW GHYY NPSNRMW++L SAGI P G + +D P GVGFTDVG PGT SS F + WR FY RL AH + A+ ++ S G PR++AF GKR + EL DAS + + S GLQP PPGWP PA++TE++V+ S+SGAA M+N+ARE PYR L Q + +
Sbjct: 98 PVRKRQRKAYAALTGPSKGLPEKLGAA------PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSIGCSCG-----------------------------------RCGAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPMSNQAREAPYRQLAQRLAQ 324
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE) HSP 1 Score: 171 bits (432), Expect = 6.200e-45 Identity = 103/243 (42.39%), Postives = 130/243 (53.50%), Query Frame = 1
Query: 382 PLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDED-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELF-FDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHR 1104
PLRL+I+GHNPSE AW+ GHYY NPSN MW++L S GI P G + D+D P +GVGF DVG PGT SS F + +W R FY RL AH RAAA++ G G+ G PR++AF+GKRQ+ EL S +D+A+T FG P P GWPFP TE++V S+SGAAAMT E RE PY+ L + + + EW R
Sbjct: 49 PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASI------------------------GCTCGLC-----------GAPRLVAFSGKRQFLELLNVGRSGRDRAKT-------VEFG--PQSELPRGWPFPRS-TEVWVCSSTSGAAAMTKEQREGPYKRLAERLARE--EWPRR 244
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO) HSP 1 Score: 171 bits (434), Expect = 1.030e-44 Identity = 96/245 (39.18%), Postives = 132/245 (53.88%), Query Frame = 1
Query: 361 SPGEPE----WPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPIT-SGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLK 1080
+PG PE PLRLII+GHNPS+ AW GHYY NPSN MW++L + I PS T +DC + +GVGFTDVG IPGT+SS+F W GFY+RL AH RA+ ++ + GK G P ++AF+GKRQW EL + GK+ +F P ++RP GWP P + TE++V+ S+SGA+ MT EAR P+ +L + +++
Sbjct: 106 APGVPEKLGDHPLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCT------------------CGK-----------------CGAPALVAFSGKRQWSELINTG--------RKGKNKLTKFATGPQNMRPEGWPLP-DSTEVWVMTSTSGASPMTTEARMAPWHELSKQLMQ 306
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A836CAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH3_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.130e-43 Identity = 107/271 (39.48%), Postives = 131/271 (48.34%), Query Frame = 1
Query: 319 GQTTAKGLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATT-------------IKAEIEN--------GYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVV--PSSSGAAAMTNEARETPYRDL 1062
G + GL EK RSPG PEWPLR + +GHNPS AW GH+Y +PSN MW+LL +AG+ P T +DE PI GVGFTD+G PGT S+ F + L +WR G ++RL H RA +K E+E+ GYP +IAF GKRQW ELFF + K +GLQ A RPP WPFP VV SSSGA+A++NEAR PYR L
Sbjct: 93 GSGSGGGLPEKL-RSPGHPEWPLRCVCVGHNPSATAWAKGHFYAHPSNHMWRLLHAAGVSPRPLTCVDDERLPIELGVGFTDLGHDCPGTNSAAFKRDVLRTWRAGLFERLRGHVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLEMEDAAAAPERLGYPHVIAFTGKRQWRELFFGTPEAEALAKK------VDYGLQQA--RPPDWPFPPPPNGPLVVVLASSSGASALSNEARIAPYRLL 354
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A482SFZ9_9ARCH (UDG domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFZ9_9ARCH) HSP 1 Score: 165 bits (418), Expect = 1.720e-42 Identity = 112/281 (39.86%), Postives = 141/281 (50.18%), Query Frame = 1
Query: 259 LMDSLDSKPVKKMRKSTGAKGQT-----TAKGLVEKYSRSPGEPEWPLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGY-PRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKS 1083
L+ ++ + KK R+ KG+ AKGL E Y +PG E LRL+IIGHNPS +AW GHYY NPSNRMW LL+ AGI+PS F A++D CP GVGFTDV F + T SS F + L + F+ RL+AH R E Y P I+AFAG RQW LF +S + RFGLQ RPP WP +++F++PS+SGAAAMT + RE PY LG +LKS
Sbjct: 76 LLGFVEGQNKKKKRQVAATKGKAEHSAAAAKGLGEMYC-TPGTEEKRLRLLIIGHNPSHQAWTKGHYYANPSNRMWPLLTKAGIVPSHFNANSDLLCPSVCGVGFTDVMFGVGETDSSLFSDEALRACTAPFFARLVAHCHRVR--------------------------NNHHXXXXXXXXXXXEDAAAYSPLILAFAGVRQWRCLFPPSSKWET-----------RFGLQ--TNRPPNWPPELASSQVFLLPSTSGAAAMTTQQREEPYIQLGM-LLKS 315
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A8IDF6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IDF6_CHLRE) HSP 1 Score: 164 bits (415), Expect = 6.990e-42 Identity = 103/265 (38.87%), Postives = 131/265 (49.43%), Query Frame = 1
Query: 310 GAKGQTTAKGLVEKYSRSPGEPEW----PLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDED--CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDAS--AKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLK 1080
G++ +T + +PG PE PLRL+I+GHNPSE AW GHYY NPSN +W LL GI P +D P +GVGF DVG +PGT SS F + W RGFY RL AH RAA ++ G G+ G PR++AF GKRQ+ EL + A++K +T FG Q A PPGWP P TE++V S+SGAA MT EARE PY L + + +
Sbjct: 99 GSRSKTAKSDSIPSLDSAPGVPEKLGDDPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAVAGVGFLDVGCGVPGTDSSRFKSEVFEGWSRGFYSRLRAHMRRAATSI------------------------GCRCGLC-----------GAPRLVAFTGKRQYLELMNVGAGPARNKVKT-------VEFGRQAA--LPPGWPLPPS-TEVWVCTSTSGAAPMTREAREQPYVQLAERLAQ 318
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Match: A0A8J4AKJ5_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKJ5_9CHLO) HSP 1 Score: 167 bits (423), Expect = 6.510e-41 Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 382 PLRLIIIGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPSGFTASNDED-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLIAHAERAAATVAASKSSPAEPATDRGTDSTSAAGKGADQGVATATTIKAEIENGYPRIIAFAGKRQWEELFFDASAKDKARTKGGKSGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHR 1104
PLRL+I+GHNPS AW+ GHYY +P+N MW+LL + GI P G ++ D+D P +GVGF DVG PGT SS F + SW + FY RL H +RA+A++ G G+ G P ++AF+GKR + EL + K R K + GP + L P GWPFPA TE++V S+SGAAA+T E RE PYR L + M + EW R
Sbjct: 328 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSSSFSSEVFKSWSQAFYARLKGHMDRASASI------------------------GCSCGLC-----------GAPSLVAFSGKRHYLELL-NVGKPPKERVKTVEHGPQK-------LLPAGWPFPAAATEVWVCSSTSGAAALTREQREAPYRRLAEKMREI--EWPRR 524 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8327.19687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8327.19687.1 >prot_Ecto-sp13_S_contig8327.19687.1 ID=prot_Ecto-sp13_S_contig8327.19687.1|Name=mRNA_Ecto-sp13_S_contig8327.19687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp MPLHVGPAATAVLLALFWCSRAVFSFLPVPPLSFKMNSEQNDENPFNEFSback to top mRNA from alignment at Ecto-sp13_S_contig8327:4033..6939+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8327.19687.1 ID=mRNA_Ecto-sp13_S_contig8327.19687.1|Name=mRNA_Ecto-sp13_S_contig8327.19687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8327:4033..6939+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8327:4033..6939+ >mRNA_Ecto-sp13_S_contig8327.19687.1 ID=mRNA_Ecto-sp13_S_contig8327.19687.1|Name=mRNA_Ecto-sp13_S_contig8327.19687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8327:4033..6939+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |