mRNA_Ecto-sp13_S_contig8326.19685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8326.19685.1
Unique NamemRNA_Ecto-sp13_S_contig8326.19685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8326.19685.1 vs. uniprot
Match: D7FTJ0_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ0_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 2.660e-130
Identity = 172/178 (96.63%), Postives = 173/178 (97.19%), Query Frame = 1 
Query:    1 NLFNDSTDIGLGELDVGPSTLWRGAWEQGVYDEDSPYEGSRLLMVLKPGRTLDPDSDEDMFVRISKRNRISAFCGWAEDSVDFRLYTNSSDFDEAVIETSPRLGDGCRADCFERGVCDYCHEACLCHEGQGDKTFDIVDSGGWTRIDCADYVCPSGKSWAARPMTLEGGGRASLENHG 534
            NLFNDSTDIGLGELDV PSTLWRGAWEQGVYDEDSPYEGSRLLMVLKPGRTLDPDSDEDMFVRISKRNRISAFCGWAEDSVDFRLYTNSSDF EA+IETSPRLGDGCRADCFERGVCDYCHEAC CHEGQGDKTFDIVDSGGWTRIDCADYVCPSGKSWAARP TLEG GRASLENHG
Sbjct:   95 NLFNDSTDIGLGELDVSPSTLWRGAWEQGVYDEDSPYEGSRLLMVLKPGRTLDPDSDEDMFVRISKRNRISAFCGWAEDSVDFRLYTNSSDFGEAIIETSPRLGDGCRADCFERGVCDYCHEACHCHEGQGDKTFDIVDSGGWTRIDCADYVCPSGKSWAARPTTLEGRGRASLENHG 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8326.19685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTJ0_ECTSI2.660e-13096.63EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8326contigEcto-sp13_S_contig8326:2007..4217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size536
Hectar predicted targeting categoryother localisation
Exons5
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.85865-CDS-Ecto-sp13_S_contig8326:2006..20891681464102.85865-CDS-Ecto-sp13_S_contig8326:2006..2089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 2007..2089 -
1681464102.870868-CDS-Ecto-sp13_S_contig8326:2502..26301681464102.870868-CDS-Ecto-sp13_S_contig8326:2502..2630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 2503..2630 -
1681464102.8802166-CDS-Ecto-sp13_S_contig8326:2989..31441681464102.8802166-CDS-Ecto-sp13_S_contig8326:2989..3144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 2990..3144 -
1681464102.8918626-CDS-Ecto-sp13_S_contig8326:3464..35931681464102.8918626-CDS-Ecto-sp13_S_contig8326:3464..3593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 3465..3593 -
1681464102.9024382-CDS-Ecto-sp13_S_contig8326:4178..42171681464102.9024382-CDS-Ecto-sp13_S_contig8326:4178..4217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 4179..4217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8326.19685.1prot_Ecto-sp13_S_contig8326.19685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8326 2007..4217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8326.19685.1

>prot_Ecto-sp13_S_contig8326.19685.1 ID=prot_Ecto-sp13_S_contig8326.19685.1|Name=mRNA_Ecto-sp13_S_contig8326.19685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
NLFNDSTDIGLGELDVGPSTLWRGAWEQGVYDEDSPYEGSRLLMVLKPGR
TLDPDSDEDMFVRISKRNRISAFCGWAEDSVDFRLYTNSSDFDEAVIETS
PRLGDGCRADCFERGVCDYCHEACLCHEGQGDKTFDIVDSGGWTRIDCAD
YVCPSGKSWAARPMTLEGGGRASLENHG
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mRNA from alignment at Ecto-sp13_S_contig8326:2007..4217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8326.19685.1 ID=mRNA_Ecto-sp13_S_contig8326.19685.1|Name=mRNA_Ecto-sp13_S_contig8326.19685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:2007..4217- (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTGTTCAACGACAGTACAGACATTGGTCTTGGCGAGGTATGTGCGTG
GGTCAAGTTCCGGCGTGGTTGGATAATACTGGTAGTTCGTAGTCCAAGCA
GCAGCGCAACTTGTTCGGATGGATTTTCTGTCGTTGCAGACAGCAGAAGA
ACCTTACCTAGCGAGATGAGTCGAAGATGCACCACAGAGAAAGAAACTCT
GTGCATGGATGAGGCTTCGACGGGTGGCACCGCTGTGGTTGCAGTGCCTG
CATGTTGACCCCCTATGGTCGTGAGAAATGAGCACGAGAGGATGAAGGTG
GGTGATAGGTGGGGGTACACATATGTGACCGGCTCAAGCAGAACGGTTGG
TTGATTCAAGTACGGAGTGCAAACGCTCATCCTTCCTGGGGACTCCAATG
TAGGAAAACGATTATTGTCACACACTTTTGGTTTCTCCGGAAGGTTTCCG
AGCCCGTTCGACCAGCGTCAGGCGCTAAACACAGGATTAGCTCCTGCTTT
CCCATTTTCCGATATTGGCAATCCACGTTCTGGTGTTCTCCCGGTATCCT
GCTGCCTGCATGTCATTGCAGCGCCCCCCCACCTTTCCCCCGTCCCGATG
AACACGCAATGGCTTTCTGGACAGCTGGATGTAGGCCCATCCACCCTTTG
GAGAGGCGCGTGGGAGCAAGGGGTGTACGACGAAGATTCCCCATACGAAG
GATCACGCCTGTTGATGGTGCTAAAACCTGGCCGGACCTTAGACCCCGAT
TCGGTGAGATATCAGTGCGGCTAACGTTTCCACGCGACGTATCGCGTTCT
ATTTACGTAGTTTCGTGAGGGAAAGAGTCGCTGTCAATATCAAGCCAAAG
ATTGGTTGGGACAACACCGACAGAGATATCAAAACTCTGTTTCAAATATA
CATCGACGTGATAGGCAAATTTTCCATGATCACCGTTGAGGCGGAACATG
GGGTCGACAATTCCAACACCAAGTGCACCTCTCGAAGCACGGCTGAAGTC
GTTAACTACTACCTCTCAAGCGTGGCGTGAACAATAGTGTTGCGCCTACC
TGTGCATGCTATGGACATAACAGGATGAGGATATGTTCGTAAGAATTTCC
AAGCGCAACCGAATTTCAGCGTTCTGTGGTTGGGCGGAGGATTCGGTGGA
CTTCCGCCTCTACACGAACTCCTCGGACTTCGATGAAGCAGTTATCGAGA
CTTCGCCCCGATTAGGCGACGGATGCAGGTAAGTGACGGTCTACTCCGAA
CAACATTGTAGTTTGCATGTACGCGCTGCCTTTGCTGATATCTGGTTGGC
TGTTGGCTTTGAATAGGTCAGGGAGACGGTACGGGTACCACCTTAAGACG
CATCGATGATGCTTACTTTGGCCAAGAGAATACCAGGTACCGCTCAGGAT
GTGACTTTCTCGCGAAACTTTCACGGCAAACCACTTGGAGGAGCCAGTTG
TACGTGCTGTATACTTTACTACTGCTATGATCATGCCGTATGTTGGACAA
CTGAGATATTCTGCTTTCGCTGGTATTGCGACGTCGAGCACCCAACGCCA
GTGAATGCACCCCATGCGTTTGCTCTACAACTTGCAGAGCGGACTGCTTC
GAAAGGGGGGTGTGCGACTACTGCCACGAGGCTTGCCTTTGCCACGAGGG
ACAAGGGGACAAGACATTCGACATCGTGGACAGCGGGGGCTGGACGCGTA
TAGATTGCGCCGACTGTGAGAGAACAGCAACCACGATAGCAATATTCATT
TTGAACACACGAAGAGAATCGGTGTGGTAGCTGGGATGCATGGGGATGCG
GTATGTAAATACATACGTTTTCACAAGATGCACCACGTGGTTGTGTAGGG
GGATACGCAGGGCGCGCCCAAACCGGAAGGTGTAGGCCGTAGCATGCGTA
CACCGAGCTCGCTTGCCACGTACCTTCAATCTCAAGATGATACAATCCCG
ACGAAGGAAGTGTTCTTCACCGAACCACTCCTTTGAGCTATGTTTGTTTC
ATGCTTCAATCGCCGCACCATATGTCGTCGTGCTCCAGCGGTACTGCAGC
AGCAGTTCGCACTCATCCAAGAACGCATTCATTCGTTGTGTGTTAAGATG
CGGGCTTCTCTCTTTTGGCCTGATGCAGATGTATGTCCTTCGGGGAAATC
GTGGGCGGCGCGGCCGATGACCCTCGAAGGTGGAGGAAGGGCATCGTTAG
AGAATCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8326:2007..4217-

>mRNA_Ecto-sp13_S_contig8326.19685.1 ID=mRNA_Ecto-sp13_S_contig8326.19685.1|Name=mRNA_Ecto-sp13_S_contig8326.19685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:2007..4217- (Ectocarpus species13 EcNAP12_S_4_19m)
AACTTGTTCAACGACAGTACAGACATTGGTCTTGGCGAGCTGGATGTAGG
CCCATCCACCCTTTGGAGAGGCGCGTGGGAGCAAGGGGTGTACGACGAAG
ATTCCCCATACGAAGGATCACGCCTGTTGATGGTGCTAAAACCTGGCCGG
ACCTTAGACCCCGATTCGGATGAGGATATGTTCGTAAGAATTTCCAAGCG
CAACCGAATTTCAGCGTTCTGTGGTTGGGCGGAGGATTCGGTGGACTTCC
GCCTCTACACGAACTCCTCGGACTTCGATGAAGCAGTTATCGAGACTTCG
CCCCGATTAGGCGACGGATGCAGAGCGGACTGCTTCGAAAGGGGGGTGTG
CGACTACTGCCACGAGGCTTGCCTTTGCCACGAGGGACAAGGGGACAAGA
CATTCGACATCGTGGACAGCGGGGGCTGGACGCGTATAGATTGCGCCGAC
TATGTATGTCCTTCGGGGAAATCGTGGGCGGCGCGGCCGATGACCCTCGA
AGGTGGAGGAAGGGCATCGTTAGAGAATCATGGG
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