mRNA_Ecto-sp13_S_contig8326.19684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8326.19684.1
Unique NamemRNA_Ecto-sp13_S_contig8326.19684.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8326.19684.1 vs. uniprot
Match: A0A6H5JSP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP6_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.420e-63
Identity = 117/162 (72.22%), Postives = 123/162 (75.93%), Query Frame = 1 
Query:    1 GIPGATDGDPPPSQSPPLFGKLPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXETQEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAAAVSAEPDVSVRSDGTEGEEGGVSGRVEVLALEGKWDEALLLVQGEACSLKG 486
            GIPGAT+ DPPPSQSPPLFGKLPEP                           + QEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAA  VSA P  SV SD TEGEEGGV GRVE LALEG+WD+ALLLVQG+ACS +G
Sbjct:  201 GIPGATNDDPPPSQSPPLFGKLPEPPPNSATPQHQPGTGGPDQHAAAAAVVEKMQEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAVTVSAGPGASVPSDRTEGEEGGVPGRVEALALEGRWDDALLLVQGKACSSEG 362
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BLAST of mRNA_Ecto-sp13_S_contig8326.19684.1 vs. uniprot
Match: D7FTJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ1_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.250e-59
Identity = 112/153 (73.20%), Postives = 118/153 (77.12%), Query Frame = 1 
Query:  163 QEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAAAVSAEPDVSVRSDGTEGEEGGVSGRVEVLALEGKWDEA--LLLVQGEACSLKGARPEVYLIPSLGSLFRFDWGMEGLSTGVPEGLSPSMTIRSGLF 615
            QEAAR AEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAA AVSAEPD S R DGT  EE GVSGRVEVLALEG       +L      C+LKGARPEVYLIP L SLFRFD G++G+ T VPEG      +R   F
Sbjct:  161 QEAARAAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERALSLVRDAAAAVAVSAEPDASARRDGTAAEEDGVSGRVEVLALEGSRGRVRGMLRRSLSCCNLKGARPEVYLIPRLWSLFRFDGGLDGVGTDVPEGQVFQSRLRLAFF 313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8326.19684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSP6_9PHAE3.420e-6372.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTJ1_ECTSI1.250e-5973.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8326contigEcto-sp13_S_contig8326:214..1032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size631
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001580.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.814547-CDS-Ecto-sp13_S_contig8326:213..6891681464102.814547-CDS-Ecto-sp13_S_contig8326:213..689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 214..689 +
1681464102.8253083-CDS-Ecto-sp13_S_contig8326:877..10311681464102.8253083-CDS-Ecto-sp13_S_contig8326:877..1031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8326 878..1031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8326.19684.1prot_Ecto-sp13_S_contig8326.19684.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8326 214..1031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8326.19684.1

>prot_Ecto-sp13_S_contig8326.19684.1 ID=prot_Ecto-sp13_S_contig8326.19684.1|Name=mRNA_Ecto-sp13_S_contig8326.19684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
GIPGATDGDPPPSQSPPLFGKLPEPPPNSATPRRQPGTGGEDQHAAAAAA
VEETQEAARTAEAALATVETMWARAQHDPSPATCRAALDACAAGGQWERA
LSLVRDAAAAAAVSAEPDVSVRSDGTEGEEGGVSGRVEVLALEGKWDEAL
LLVQGEACSLKGARPEVYLIPSLGSLFRFDWGMEGLSTGVPEGLSPSMTI
RSGLFFRDVL
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mRNA from alignment at Ecto-sp13_S_contig8326:214..1032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8326.19684.1 ID=mRNA_Ecto-sp13_S_contig8326.19684.1|Name=mRNA_Ecto-sp13_S_contig8326.19684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:214..1032+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATTCCAGGTGCGACAGATGGCGATCCGCCCCCATCACAATCACCGCC
ACTTTTCGGAAAGCTTCCCGAACCACCGCCCAACAGCGCCACGCCGCGAC
GCCAGCCAGGAACCGGAGGAGAAGATCAGCATGCCGCTGCTGCTGCGGCC
GTCGAGGAGACGCAAGAAGCGGCAAGGACGGCGGAGGCCGCCCTCGCCAC
GGTGGAGACGATGTGGGCGAGAGCGCAACACGACCCGTCCCCGGCGACGT
GTCGGGCGGCGCTCGACGCTTGCGCGGCGGGCGGGCAGTGGGAGCGCGCG
CTGTCGTTGGTTCGTGATGCTGCAGCGGCAGCGGCGGTGTCCGCCGAGCC
TGACGTAAGCGTCCGCAGTGACGGGACAGAAGGAGAGGAGGGCGGTGTTT
CTGGGAGGGTGGAGGTTCTGGCGCTCGAGGGCAAGTGGGATGAGGCGCTC
TTATTGGTGCAGGGGGAGGCGTGTTCGTCTGAGGGTGGTGGCGATGGCGG
CGAGAACGGGAACCGATAGCCTCAGGTGGCCTTGACGAAGGGTAGCTCTC
CGCGGACGGCAACATGAAACGGTTATGTAGATACCCCTGTGATGTGCGTG
GTTGCTGGTTGGGCGGCCGAGGGAGGCTGAGAGGAATGTTCTGAACGAGT
ATCTCGTGTTGAAGCCTCAAGGGCGCCCGCCCCGAGGTGTATCTGATCCC
TAGCTTGGGGTCTTTGTTTCGATTTGATTGGGGAATGGAGGGGTTGAGCA
CTGGTGTACCGGAAGGCTTAAGTCCTTCAATGACGATTAGGTCTGGCCTC
TTTTTCCGCGACGTATTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8326:214..1032+

>mRNA_Ecto-sp13_S_contig8326.19684.1 ID=mRNA_Ecto-sp13_S_contig8326.19684.1|Name=mRNA_Ecto-sp13_S_contig8326.19684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8326:214..1032+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATTCCAGGTGCGACAGATGGCGATCCGCCCCCATCACAATCACCGCC
ACTTTTCGGAAAGCTTCCCGAACCACCGCCCAACAGCGCCACGCCGCGAC
GCCAGCCAGGAACCGGAGGAGAAGATCAGCATGCCGCTGCTGCTGCGGCC
GTCGAGGAGACGCAAGAAGCGGCAAGGACGGCGGAGGCCGCCCTCGCCAC
GGTGGAGACGATGTGGGCGAGAGCGCAACACGACCCGTCCCCGGCGACGT
GTCGGGCGGCGCTCGACGCTTGCGCGGCGGGCGGGCAGTGGGAGCGCGCG
CTGTCGTTGGTTCGTGATGCTGCAGCGGCAGCGGCGGTGTCCGCCGAGCC
TGACGTAAGCGTCCGCAGTGACGGGACAGAAGGAGAGGAGGGCGGTGTTT
CTGGGAGGGTGGAGGTTCTGGCGCTCGAGGGCAAGTGGGATGAGGCGCTC
TTATTGGTGCAGGGGGAGGCGTGTTCCCTCAAGGGCGCCCGCCCCGAGGT
GTATCTGATCCCTAGCTTGGGGTCTTTGTTTCGATTTGATTGGGGAATGG
AGGGGTTGAGCACTGGTGTACCGGAAGGCTTAAGTCCTTCAATGACGATT
AGGTCTGGCCTCTTTTTCCGCGACGTATTG
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