mRNA_Ecto-sp13_S_contig8325.19682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8325.19682.1
Unique NamemRNA_Ecto-sp13_S_contig8325.19682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: D7G5N8_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N8_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.770e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:  136 GSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLPEA 429
            GSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLPEA
Sbjct:  201 GSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLPEA 298
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A835YL41_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL41_9STRA)

HSP 1 Score: 137 bits (345), Expect = 8.630e-38
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:  136 GSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            G GY V I+W+GA H V CD ETT+LEAAMDAGL+LP SCMSGSCLTCPG++ +G V+Q +GVLED+Q  AG +LTC+SYP SD+ F V+ E++L
Sbjct:  137 GDGYVVTIDWDGATHVVRCDGETTVLEAAMDAGLDLPHSCMSGSCLTCPGRLSAGRVEQGDGVLEDDQIAAGLMLTCVSYPLSDLRFEVIGEDEL 231
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A7J7LHT5_9MAGN (Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LHT5_9MAGN)

HSP 1 Score: 105 bits (263), Expect = 1.650e-26
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG+I E+  D + T+L  A+D GL +P  C  G C+TCP K++SGSVDQSEG+L D+  D G+ L C++YP SD H   + EE+L
Sbjct:   39 YKVVIEHEGSIKELEVDEDETILNKALDIGLSVPHDCKLGVCMTCPAKLMSGSVDQSEGMLSDDVVDNGYALLCVAYPRSDCHIRTIPEEEL 130
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A2J6KNW1_LACSA (Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KNW1_LACSA)

HSP 1 Score: 105 bits (263), Expect = 2.180e-26
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG   E+  D + T+LE A+D+G+ +P  C  G C+TCP K++SGSVDQSEG+L D+  + G+ L C+SYP+SD H  ++ EE+L
Sbjct:   49 YKVAIEHEGETTELEVDPDETILEKALDSGMSVPHDCKLGVCMTCPAKLLSGSVDQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 140
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A103Y2Z7_CYNCS (Ferredoxin n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y2Z7_CYNCS)

HSP 1 Score: 105 bits (262), Expect = 2.920e-26
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG   E+  D + T+LE A+D GL++P  C  G C+TCP K++SGSV+QSEG+L D+  + G+ L C+SYP+SD H  ++ EE+L
Sbjct:   47 YKVSIEHEGQTTELEVDPDETILEKALDTGLDVPHDCKLGVCMTCPAKLLSGSVNQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 138
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: UPI0010A2FF49 (ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2FF49)

HSP 1 Score: 103 bits (257), Expect = 1.610e-25
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE +G + E+  D E T+L  A+D+GLE+P  C  G C+TCP +++SGSVDQSEG+L D+  + G+ L C SYP SD H   + E++L
Sbjct:   46 YKVVIEHQGELRELEIDPEETILSKALDSGLEVPHDCKLGVCMTCPARLLSGSVDQSEGMLSDDVVERGYALLCASYPRSDCHIRTIPEDEL 137
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A4Y7IJ22_PAPSO (Ferredoxin n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IJ22_PAPSO)

HSP 1 Score: 103 bits (256), Expect = 2.410e-25
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG+   ++ D + T+L  A+D+G+E+P  C  G C+TCP K++SGSVDQS+G+L D+  D GF L C +YP SD H   + EE+L
Sbjct:   48 YKVVIEHEGSTTTLDVDPDETILSKALDSGMEVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVDRGFALLCAAYPRSDCHIRTIPEEEL 139
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A1Q3CXQ9_CEPFO (Fer2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CXQ9_CEPFO)

HSP 1 Score: 103 bits (256), Expect = 3.330e-25
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG   E++   + T+L  A+D+GL +P  C  G C+TCP K+VSG+VDQSEG+L D+  + G+ L C SYP SD HF  + EEDL
Sbjct:   60 YKVVIEHEGQATELDVGPDETILAKALDSGLSVPHDCKLGVCMTCPAKLVSGTVDQSEGMLSDDVVERGYALLCASYPRSDCHFRTIPEEDL 151
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A6J1IWL8_CUCMA (Ferredoxin n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1IWL8_CUCMA)

HSP 1 Score: 102 bits (254), Expect = 5.980e-25
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKV IE EG   E+  DA+ ++L +A+D GL++P  C  G C+TCP ++VSG+VDQSEG+L D+  + G+ L C++YP SD H   + EE+L
Sbjct:   56 YKVVIEHEGQTTELEVDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 147
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BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Match: A0A067EGN2_CITSI (Ferredoxin n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067EGN2_CITSI)

HSP 1 Score: 102 bits (253), Expect = 6.110e-25
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:  145 YKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEG-VLEDEQKDAGFLLTCISYPESDVHFAVVDEEDL 420
            YKVK+       E+ C  +T +L+AA DAG++LP SC +GSC TC GK+VSGSVDQS+G  LED+Q DAG++LTC++YP SDV      +E++
Sbjct:   52 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKVVSGSVDQSDGSFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8325.19682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N8_ECTSI1.770e-62100.00Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YL41_9STRA8.630e-3864.21Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7J7LHT5_9MAGN1.650e-2651.09Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 ... [more]
A0A2J6KNW1_LACSA2.180e-2650.00Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6... [more]
A0A103Y2Z7_CYNCS2.920e-2650.00Ferredoxin n=1 Tax=Cynara cardunculus var. scolymu... [more]
UPI0010A2FF491.610e-2548.91ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alb... [more]
A0A4Y7IJ22_PAPSO2.410e-2548.91Ferredoxin n=2 Tax=Papaver somniferum TaxID=3469 R... [more]
A0A1Q3CXQ9_CEPFO3.330e-2551.09Fer2 domain-containing protein n=1 Tax=Cephalotus ... [more]
A0A6J1IWL8_CUCMA5.980e-2547.83Ferredoxin n=4 Tax=Cucurbitaceae TaxID=3650 RepID=... [more]
A0A067EGN2_CITSI6.110e-2552.69Ferredoxin n=2 Tax=Citrus sinensis TaxID=2711 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8325contigEcto-sp13_S_contig8325:3..1422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score101.7
Seed ortholog evalue3e-19
Seed eggNOG ortholog102107.XP_008224313.1
Model size432
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009987,GO:0016491,GO:0022900,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0055114
Exons3
EggNOG free text desc.Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
EggNOG OGs2RZRG@2759,37VRI@33090,3GITD@35493,4JTZ2@91835,COG0633@1
Cds size432
COG Functional cat.C
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.6938624-CDS-Ecto-sp13_S_contig8325:2..1521681464102.6938624-CDS-Ecto-sp13_S_contig8325:2..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 3..152 +
1681464102.7141478-CDS-Ecto-sp13_S_contig8325:627..8251681464102.7141478-CDS-Ecto-sp13_S_contig8325:627..825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 628..825 +
1681464102.72447-CDS-Ecto-sp13_S_contig8325:1338..14221681464102.72447-CDS-Ecto-sp13_S_contig8325:1338..1422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 1339..1422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8325.19682.1prot_Ecto-sp13_S_contig8325.19682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8325 3..1422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8325.19682.1

>prot_Ecto-sp13_S_contig8325.19682.1 ID=prot_Ecto-sp13_S_contig8325.19682.1|Name=mRNA_Ecto-sp13_S_contig8325.19682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
AASAPVAQAPPVATAPSAVVAAPPAAVPEVAAPPAEAPPADAPPAGSGYK
VKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSG
SVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLPEA*
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mRNA from alignment at Ecto-sp13_S_contig8325:3..1422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8325.19682.1 ID=mRNA_Ecto-sp13_S_contig8325.19682.1|Name=mRNA_Ecto-sp13_S_contig8325.19682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8325:3..1422+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCATCAGCACCAGTAGCACAAGCACCACCTGTAGCGACGGCACCTTC
AGCGGTAGTCGCTGCTCCGCCCGCCGCAGTGCCGGAGGTGGCCGCTCCTC
CGGCTGAAGCCCCCCCCGCTGACGCTCCCCCCGCCGGGTCAGGCTACAAG
GTGAGACCCCCGATGTGTTTGTGGTGACAGACGTTGGCTTTGTGGCGTGA
ACTACTGTTTTACTGCAGGGAAAGTCCAGATAAATGCTTGAGGGTTGTGG
AGATGCTGGTGTCCAGAGCGGAAGCGTGGCTTCATGCCGCCCCCCCCGCC
TCCGAGCGGAAGTGTGACGTGCCGGAGTGTGAGACCATCGAAGCGTCGCT
GCCTCCCAGCCCTGTAAACTTGCTACACGGCACACGGCCCATCTGTTTCT
TTCTTGGTCCCACGCCCATCCCGTGGGACTATTTTATGTGACCGCATTGG
TACGTTTCCCTCACCGATTAAGAATGCACGCGGTGAAGAACTGGATACAG
GTTCTATTCTAGTTCTCGTCTAAACCCCAGAAGCTCGCTGGCTGGAGTTT
AGCGGAACGCTAATGCCGACACCCAACATATCTTCTCCCTGGTTTCCTGG
TTTCCGCCGTGCTATGTGTTCGAAGGTGAAAATCGAGTGGGAGGGGGCCA
TCCATGAAGTCAACTGCGATGCGGAGACGACGCTGCTGGAAGCCGCCATG
GATGCGGGCTTGGAGCTGCCGAGCTCGTGCATGTCGGGCAGCTGCCTCAC
GTGTCCCGGCAAGATCGTGAGCGGCTCCGTGGATCAGAGCGAGGGTGTTT
TGGAGGACGAGCAGAAAGATGCGGTGAGCAAGCAACTTTATCCTTCCACA
TAATTGGTCTCGGTGGATGTGGGGGATAAGATAGCCGCTTACATAGCTGC
ACAATCACCGGAAAGGATAGAGGTGTTGTTTTGTTGTCTTGGCACGGATT
TCTGTAGACAAAACAATGTGTTTTGTGAAACGCTTACTACGGTACAGACT
GCTGTTATAGGTGGATTTTCATAGTGCTGTTGAGTGGCCGCCTACAGCTG
GCGTAACCATGGTTTTGCGGCGCAGCTAAGTGTTGCGGGAGGTCTCGACC
AATCTTCATGCCCTCGACGAAATCGGGTCTGTTGTGAGTCCAACATCTGG
ATATTCTCCCAGTGCTCTCTGTTCGTGGACACACACCTCGTCGTCCCCGC
AGCGCGAGCTTTTCTCTTTTCTCTTTTCTCTCTCCTTCTCTCCCTCGCCG
GGTCTGTGTGCTTTCCTGCCAAACGTGCTGAACCCTGCGTGTGTTGATGT
TCTTTTGTTACGATTTTCGTTCACGCTGGTCGATAGGGGTTCCTGCTGAC
ATGCATCTCGTACCCGGAGAGTGATGTCCACTTTGCCGTGGTGGACGAAG
AAGACTTGCCGGAAGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8325:3..1422+

>mRNA_Ecto-sp13_S_contig8325.19682.1 ID=mRNA_Ecto-sp13_S_contig8325.19682.1|Name=mRNA_Ecto-sp13_S_contig8325.19682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8325:3..1422+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCATCAGCACCAGTAGCACAAGCACCACCTGTAGCGACGGCACCTTC
AGCGGTAGTCGCTGCTCCGCCCGCCGCAGTGCCGGAGGTGGCCGCTCCTC
CGGCTGAAGCCCCCCCCGCTGACGCTCCCCCCGCCGGGTCAGGCTACAAG
GTGAAAATCGAGTGGGAGGGGGCCATCCATGAAGTCAACTGCGATGCGGA
GACGACGCTGCTGGAAGCCGCCATGGATGCGGGCTTGGAGCTGCCGAGCT
CGTGCATGTCGGGCAGCTGCCTCACGTGTCCCGGCAAGATCGTGAGCGGC
TCCGTGGATCAGAGCGAGGGTGTTTTGGAGGACGAGCAGAAAGATGCGGG
GTTCCTGCTGACATGCATCTCGTACCCGGAGAGTGATGTCCACTTTGCCG
TGGTGGACGAAGAAGACTTGCCGGAAGCGTGA
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