mRNA_Ecto-sp13_S_contig83237.19681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83237.19681.1
Unique NamemRNA_Ecto-sp13_S_contig83237.19681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: D7G7H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H7_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.790e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   55 SAGKSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            SAGKSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF
Sbjct:   69 SAGKSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 118
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A6H5LJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJM5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.330e-22
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   55 SAGKSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            S G+SEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF
Sbjct:   70 SGGRSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 119
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A7S2UUZ3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUZ3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.150e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   82 NVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            N+SWNDIK VQ LIERCLQ++MTQ EII ALQV+ANVDPSF
Sbjct:   17 NISWNDIKMVQALIERCLQQYMTQPEIITALQVQANVDPSF 57
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A7S3ZKS9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKS9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-9
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   88 SWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPS 201
            +W  +KSVQNLIERCL ++MTQ E+IA LQV+A+VDP+
Sbjct:   11 TWTQVKSVQNLIERCLNQYMTQAEVIATLQVQADVDPA 48
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: T0QIE9_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIE9_SAPDV)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-9
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   67 SEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            ++D    +WN+I  VQNLIERCLQ+ M+Q +IIA LQ +ANVDP+F
Sbjct:   11 AKDAGTFNWNEILRVQNLIERCLQQCMSQADIIATLQTQANVDPTF 56
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A067BEL9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BEL9_SAPPC)

HSP 1 Score: 58.9 bits (141), Expect = 3.350e-9
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   88 SWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            +WN+I  VQNLIERCLQ+ M+QT+II+ LQ +ANVDP+F
Sbjct:   20 NWNEILRVQNLIERCLQQCMSQTDIISTLQTQANVDPTF 58
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A835YZS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.780e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   61 GKSEDDSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            G+  D + V W+DIK VQ LIERCL +FMTQ++++A L  +AN+DPSF
Sbjct:   22 GQRRDLNLVKWDDIKMVQTLIERCLNQFMTQSQVVATLVQQANIDPSF 69
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A662X978_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X978_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.100e-8
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   88 SWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            SWNDI  VQNLIERCLQ++++++EI+ AL+ +ANVDP F
Sbjct:  225 SWNDILRVQNLIERCLQQYLSKSEILVALKGQANVDPGF 263
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A8K1CTM8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTM8_PYTOL)

HSP 1 Score: 56.6 bits (135), Expect = 8.580e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   88 SWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            SWNDI  VQNLIE CLQK++T+ +II  LQ +A +DPSF
Sbjct:  152 SWNDILRVQNLIESCLQKYLTKNDIITTLQNQAKIDPSF 190
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BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Match: A0A6A3YBK8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YBK8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.660e-7
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   85 VSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSF 204
            +SWNDI  VQNLIERCLQ+++++ +I+  L+ +ANVDP+F
Sbjct:  191 LSWNDILRVQNLIERCLQQYLSKNDILLTLKEQANVDPAF 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83237.19681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7H7_ECTSI1.790e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJM5_9PHAE8.330e-2296.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UUZ3_9STRA4.150e-1380.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3ZKS9_9STRA1.240e-965.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
T0QIE9_SAPDV2.420e-958.70Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A067BEL9_SAPPC3.350e-966.67Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]
A0A835YZS3_9STRA4.780e-956.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662X978_9STRA4.100e-864.10Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8K1CTM8_PYTOL8.580e-864.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3YBK8_9STRA2.660e-757.50Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83237contigEcto-sp13_S_contig83237:166..595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7G7H7
Model size204
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Plant protein 1589 of unknown function (A_thal_3526)
EggNOG OGs28IH3@1,2QQTW@2759
Cds size204
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.6284642-CDS-Ecto-sp13_S_contig83237:165..3421681464102.6284642-CDS-Ecto-sp13_S_contig83237:165..342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83237 166..342 +
1681464102.6435196-CDS-Ecto-sp13_S_contig83237:568..5951681464102.6435196-CDS-Ecto-sp13_S_contig83237:568..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83237 569..595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83237.19681.1prot_Ecto-sp13_S_contig83237.19681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83237 166..595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83237.19681.1

>prot_Ecto-sp13_S_contig83237.19681.1 ID=prot_Ecto-sp13_S_contig83237.19681.1|Name=mRNA_Ecto-sp13_S_contig83237.19681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
AGTAAPAPPPAPAPPPAASAGKSEDDSNVSWNDIKSVQNLIERCLQKFMT
QTEIIAALQVEANVDPSF
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mRNA from alignment at Ecto-sp13_S_contig83237:166..595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83237.19681.1 ID=mRNA_Ecto-sp13_S_contig83237.19681.1|Name=mRNA_Ecto-sp13_S_contig83237.19681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83237:166..595+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGTACTGCTGCTCCTGCCCCTCCTCCCGCACCAGCACCTCCTCCGGC
AGCCTCCGCAGGCAAATCGGAGGATGACTCCAATGTCTCATGGAACGATA
TCAAGAGCGTGCAGAACCTGATCGAGCGTTGCTTGCAGAAGTTCATGACC
CAGACCGAGATCATCGCGGCTCTTCAGGTGTGTGAGATCATGCAATCATA
CGTCTCGCGGACACCATCTACTGTACAACCGACAGCAGTAAACAACCCCC
CCTGTTTTATTCCGTTTGCAAAAGACAGAAAGCGCCAGTGGTGGCACATG
GTGCCGTGCTTCTCCGCGCCCAACGGTATACGTTTAGCGTCTGTCACGCA
TGCTCCAATATCCTCGTGATGCATCTCGCAACATGTGTACCTTACTTGGG
CAGGTCGAAGCAAATGTGGACCCCTCTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83237:166..595+

>mRNA_Ecto-sp13_S_contig83237.19681.1 ID=mRNA_Ecto-sp13_S_contig83237.19681.1|Name=mRNA_Ecto-sp13_S_contig83237.19681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83237:166..595+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGTACTGCTGCTCCTGCCCCTCCTCCCGCACCAGCACCTCCTCCGGC
AGCCTCCGCAGGCAAATCGGAGGATGACTCCAATGTCTCATGGAACGATA
TCAAGAGCGTGCAGAACCTGATCGAGCGTTGCTTGCAGAAGTTCATGACC
CAGACCGAGATCATCGCGGCTCTTCAGGTCGAAGCAAATGTGGACCCCTC
TTTT
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