prot_Ecto-sp13_S_contig83225.19680.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig83225.19680.1
Unique Name	prot_Ecto-sp13_S_contig83225.19680.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	125

Homology

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: D7FUV7_ECTSI (Mevalonate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 3.990e-52
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0

Query:   23 AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADII+R  VEGG ER GGGSRRPS +ELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG
Sbjct:  215 AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIISRAAVEGGGERGGGGSRRPSGSELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 317

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A7S2NSF0_9STRA (Mevalonate kinase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSF0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-21
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0

Query:   28 LSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVK 124
            +S+   S  LP+GAGLGSSAA CVA SAAL RL +    + V          + RP  A L+ INAWAFA E V+HG PSGLDNTVSCYGGA+ + K
Sbjct:   12 VSIYVRSEDLPLGAGLGSSAAFCVACSAALYRLREKTGIMGVAAVDRNIKDNNTRPEQASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQK 108

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A7S2NTU7_9STRA (Mevalonate kinase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTU7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.670e-21
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0

Query:   28 LSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVK 124
            +S+   S  LP+GAGLGSSAA CVA SAAL RL +    + V          + RP  A L+ INAWAFA E V+HG PSGLDNTVSCYGGA+ + K
Sbjct:   12 VSIYVRSEDLPLGAGLGSSAAFCVACSAALYRLREKTGIMGVAAVDRNIKDNNTRPEQASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQK 108

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A2YRN9_ORYSI (Mevalonate kinase n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A2YRN9_ORYSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.010e-20
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S AL   A ++A +   GG+  +G G       +LE +N WAF GE ++HG PSG+DNTVS +G  IKF KG
Sbjct:   95 IPGAKVWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGALLTAAGMVAAV---GGISSKGTGWELVGKDDLELVNQWAFQGEKIIHGKPSGIDNTVSTFGSMIKFKKG 215

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A0E0EIH2_9ORYZ (Mevalonate kinase n=12 Tax=Oryza TaxID=4527 RepID=A0A0E0EIH2_9ORYZ)

HSP 1 Score: 93.6 bits (231), Expect = 7.410e-20
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P     LS  L  FLF  +   G +   +   S+ LP+G+GLGSSAA CV+ S AL   A ++A +   GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  172 IPEAKIWLSAGLSAFLFLYTSILGCKPGKVTV-SSDLPMGSGLGSSAAFCVSMSGALLTAAGVVAAV---GGISSEGTGWELVGKDDLELVNQWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 292

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: Q8W5F3_ORYSJ (Mevalonate kinase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8W5F3_ORYSJ)

HSP 1 Score: 91.7 bits (226), Expect = 1.950e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  106 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 226

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: Q339V1_ORYSJ (Mevalonate kinase n=6 Tax=Oryza TaxID=4527 RepID=Q339V1_ORYSJ)

HSP 1 Score: 91.7 bits (226), Expect = 2.570e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  106 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 226

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A022R4B8_ERYGU (Mevalonate kinase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R4B8_ERYGU)

HSP 1 Score: 91.3 bits (225), Expect = 3.210e-19
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P  NT L+  +  FL+  +   G +       ++ LP+GAGLGSSAALCVA SAAL  L+D          ++    G +   D+ELE +N WAF GE ++HG PSG+DNTVS YG  IKF  G
Sbjct:  103 IPEANTGLASGVSAFLWLYTSIHGTKPAKA-VVNSELPLGAGLGSSAALCVALSAALLALSD-------STKLDFSHQGWQMFEDSELELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSG 219

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: UPI00125D0122 (mevalonate kinase-like isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125D0122)

HSP 1 Score: 91.3 bits (225), Expect = 3.230e-19
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P  N  L+  +  FL+  +   G +       S  LP+GAGLGSSAALCVA SAA+  L+D I+       ++    G +   D+ELE +N WAF GE ++HG PSG+DNTVS YG  IKF  G
Sbjct:  103 IPEANIGLASGVSAFLWLYTSILGCKPAKAVVHS-ELPMGAGLGSSAALCVALSAAILSLSDSIS-------IDFSQKGWQTFRDSELELVNKWAFEGENIIHGKPSGVDNTVSTYGNLIKFKSG 219

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BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A0E0B919_9ORYZ (Mevalonate kinase n=2 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0B919_9ORYZ)

HSP 1 Score: 91.7 bits (226), Expect = 3.640e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0

Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 125
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  174 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 294

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FUV7_ECTSI	3.990e-52	93.20	Mevalonate kinase n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A7S2NSF0_9STRA	1.030e-21	54.64	Mevalonate kinase (Fragment) n=1 Tax=Leptocylindru...	[more]
A0A7S2NTU7_9STRA	8.670e-21	54.64	Mevalonate kinase n=2 Tax=Leptocylindrus danicus T...	[more]
A2YRN9_ORYSI	3.010e-20	44.00	Mevalonate kinase n=1 Tax=Oryza sativa subsp. indi...	[more]
A0A0E0EIH2_9ORYZ	7.410e-20	43.20	Mevalonate kinase n=12 Tax=Oryza TaxID=4527 RepID=...	[more]
Q8W5F3_ORYSJ	1.950e-19	43.20	Mevalonate kinase n=1 Tax=Oryza sativa subsp. japo...	[more]
Q339V1_ORYSJ	2.570e-19	43.20	Mevalonate kinase n=6 Tax=Oryza TaxID=4527 RepID=Q...	[more]
A0A022R4B8_ERYGU	3.210e-19	44.00	Mevalonate kinase n=1 Tax=Erythranthe guttata TaxI...	[more]
UPI00125D0122	3.230e-19	44.00	mevalonate kinase-like isoform X1 n=5 Tax=Ipomoea ...	[more]
A0A0E0B919_9ORYZ	3.640e-19	43.20	Mevalonate kinase n=2 Tax=Oryza glumipatula TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00959	MEVGALKINASE	coord: 99..118 score: 29.71 coord: 35..57 score: 48.21
None	No IPR available	PANTHER	PTHR43290	FAMILY NOT NAMED	coord: 12..125
None	No IPR available	PANTHER	PTHR43290:SF2	MEVALONATE KINASE	coord: 12..125
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..125
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..57
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 2..125 e-value: 7.4E-32 score: 113.0
IPR006204	GHMP kinase N-terminal domain	PFAM	PF00288	GHMP_kinases_N	coord: 35..118 e-value: 4.9E-14 score: 52.3
IPR006203	GHMP kinase, ATP-binding, conserved site	PROSITE	PS00627	GHMP_KINASES_ATP	coord: 37..48
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 34..123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig83225	contig	Ecto-sp13_S_contig83225:5..502 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig83225.19680.1	mRNA_Ecto-sp13_S_contig83225.19680.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig83225 5..502 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig83225.19680.1 ID=prot_Ecto-sp13_S_contig83225.19680.1|Name=mRNA_Ecto-sp13_S_contig83225.19680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALC
VATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGET
VLHGTPSGLDNTVSCYGGAIKFVKG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR006204	GHMP_kinase_N_dom
IPR006203	GHMP_knse_ATP-bd_CS
IPR020568	Ribosomal_S5_D2-typ_fold