mRNA_Ecto-sp13_S_contig83225.19680.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83225.19680.1
Unique NamemRNA_Ecto-sp13_S_contig83225.19680.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: D7FUV7_ECTSI (Mevalonate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 3.990e-52
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:   67 AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADII+R  VEGG ER GGGSRRPS +ELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG
Sbjct:  215 AGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIISRAAVEGGGERGGGGSRRPSGSELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A7S2NSF0_9STRA (Mevalonate kinase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSF0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-21
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   82 LSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVK 372
            +S+   S  LP+GAGLGSSAA CVA SAAL RL +    + V          + RP  A L+ INAWAFA E V+HG PSGLDNTVSCYGGA+ + K
Sbjct:   12 VSIYVRSEDLPLGAGLGSSAAFCVACSAALYRLREKTGIMGVAAVDRNIKDNNTRPEQASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQK 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A7S2NTU7_9STRA (Mevalonate kinase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTU7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.670e-21
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   82 LSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVK 372
            +S+   S  LP+GAGLGSSAA CVA SAAL RL +    + V          + RP  A L+ INAWAFA E V+HG PSGLDNTVSCYGGA+ + K
Sbjct:   12 VSIYVRSEDLPLGAGLGSSAAFCVACSAALYRLREKTGIMGVAAVDRNIKDNNTRPEQASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQK 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A2YRN9_ORYSI (Mevalonate kinase n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A2YRN9_ORYSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.010e-20
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S AL   A ++A +   GG+  +G G       +LE +N WAF GE ++HG PSG+DNTVS +G  IKF KG
Sbjct:   95 IPGAKVWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGALLTAAGMVAAV---GGISSKGTGWELVGKDDLELVNQWAFQGEKIIHGKPSGIDNTVSTFGSMIKFKKG 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A0E0EIH2_9ORYZ (Mevalonate kinase n=12 Tax=Oryza TaxID=4527 RepID=A0A0E0EIH2_9ORYZ)

HSP 1 Score: 93.6 bits (231), Expect = 7.410e-20
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P     LS  L  FLF  +   G +   +   S+ LP+G+GLGSSAA CV+ S AL   A ++A +   GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  172 IPEAKIWLSAGLSAFLFLYTSILGCKPGKVTV-SSDLPMGSGLGSSAAFCVSMSGALLTAAGVVAAV---GGISSEGTGWELVGKDDLELVNQWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: Q8W5F3_ORYSJ (Mevalonate kinase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8W5F3_ORYSJ)

HSP 1 Score: 91.7 bits (226), Expect = 1.950e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  106 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: Q339V1_ORYSJ (Mevalonate kinase n=6 Tax=Oryza TaxID=4527 RepID=Q339V1_ORYSJ)

HSP 1 Score: 91.7 bits (226), Expect = 2.570e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  106 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A022R4B8_ERYGU (Mevalonate kinase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R4B8_ERYGU)

HSP 1 Score: 91.3 bits (225), Expect = 3.210e-19
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P  NT L+  +  FL+  +   G +       ++ LP+GAGLGSSAALCVA SAAL  L+D          ++    G +   D+ELE +N WAF GE ++HG PSG+DNTVS YG  IKF  G
Sbjct:  103 IPEANTGLASGVSAFLWLYTSIHGTKPAKA-VVNSELPLGAGLGSSAALCVALSAALLALSD-------STKLDFSHQGWQMFEDSELELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSG 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: UPI00125D0122 (mevalonate kinase-like isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125D0122)

HSP 1 Score: 91.3 bits (225), Expect = 3.230e-19
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P  N  L+  +  FL+  +   G +       S  LP+GAGLGSSAALCVA SAA+  L+D I+       ++    G +   D+ELE +N WAF GE ++HG PSG+DNTVS YG  IKF  G
Sbjct:  103 IPEANIGLASGVSAFLWLYTSILGCKPAKAVVHS-ELPMGAGLGSSAALCVALSAAILSLSDSIS-------IDFSQKGWQTFRDSELELVNKWAFEGENIIHGKPSGVDNTVSTYGNLIKFKSG 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Match: A0A0E0B919_9ORYZ (Mevalonate kinase n=2 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0E0B919_9ORYZ)

HSP 1 Score: 91.7 bits (226), Expect = 3.640e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1 
Query:    1 LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALCVATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG 375
            +P     LS  L  FLF  +   G R   +   S+ LP+G+GLGSSAA CV+ S  L   A ++   T  GG+  EG G       +LE +N WAF GE ++HG PSG+DN VS +G  IKF KG
Sbjct:  174 IPEAKIWLSAGLSAFLFLYTSILGCRPGKVTV-SSDLPMGSGLGSSAAFCVSMSGVLLTAAGVV---TAVGGISGEGMGWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKG 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83225.19680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV7_ECTSI3.990e-5293.20Mevalonate kinase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S2NSF0_9STRA1.030e-2154.64Mevalonate kinase (Fragment) n=1 Tax=Leptocylindru... [more]
A0A7S2NTU7_9STRA8.670e-2154.64Mevalonate kinase n=2 Tax=Leptocylindrus danicus T... [more]
A2YRN9_ORYSI3.010e-2044.00Mevalonate kinase n=1 Tax=Oryza sativa subsp. indi... [more]
A0A0E0EIH2_9ORYZ7.410e-2043.20Mevalonate kinase n=12 Tax=Oryza TaxID=4527 RepID=... [more]
Q8W5F3_ORYSJ1.950e-1943.20Mevalonate kinase n=1 Tax=Oryza sativa subsp. japo... [more]
Q339V1_ORYSJ2.570e-1943.20Mevalonate kinase n=6 Tax=Oryza TaxID=4527 RepID=Q... [more]
A0A022R4B8_ERYGU3.210e-1944.00Mevalonate kinase n=1 Tax=Erythranthe guttata TaxI... [more]
UPI00125D01223.230e-1944.00mevalonate kinase-like isoform X1 n=5 Tax=Ipomoea ... [more]
A0A0E0B919_9ORYZ3.640e-1943.20Mevalonate kinase n=2 Tax=Oryza glumipatula TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83225contigEcto-sp13_S_contig83225:5..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.0
Seed ortholog evalue8.8e-44
Seed eggNOG ortholog2880.D7FUV7
Preferred nameMK
Model size375
KEGG rclassRC00002,RC00017
KEGG koko:K00869
KEGG ReactionR02245
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146
KEGG ModuleM00095
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004496,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0016125,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019287,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0046872,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901615
Exons2
EggNOG free text desc.mevalonate kinase activity
EggNOG OGsCOG1577@1,KOG1511@2759
EC2.7.1.36
Cds size375
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.5515423-CDS-Ecto-sp13_S_contig83225:4..1801681464102.5515423-CDS-Ecto-sp13_S_contig83225:4..180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83225 5..180 -
1681464102.5810537-CDS-Ecto-sp13_S_contig83225:303..5021681464102.5810537-CDS-Ecto-sp13_S_contig83225:303..502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83225 304..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83225.19680.1prot_Ecto-sp13_S_contig83225.19680.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83225 5..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83225.19680.1

>prot_Ecto-sp13_S_contig83225.19680.1 ID=prot_Ecto-sp13_S_contig83225.19680.1|Name=mRNA_Ecto-sp13_S_contig83225.19680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
LPHTNTSLSCALRFFLFCMSHRAGARGLSLRAFSASLPVGAGLGSSAALC
VATSAALTRLADIIARITVEGGVEREGGGSRRPSDAELERINAWAFAGET
VLHGTPSGLDNTVSCYGGAIKFVKG
back to top

mRNA from alignment at Ecto-sp13_S_contig83225:5..502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83225.19680.1 ID=mRNA_Ecto-sp13_S_contig83225.19680.1|Name=mRNA_Ecto-sp13_S_contig83225.19680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83225:5..502- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCCCACACAAATACGTCATTATCCTGCGCGCTGCGTTTTTTTTTATT
TTGTATGAGTCACAGGGCCGGGGCACGGGGGCTATCCTTAAGGGCGTTTA
GCGCTTCCCTCCCGGTAGGGGCGGGCCTGGGGTCTTCGGCTGCTCTTTGC
GTAGCTACCTCGGCTGCCCTCACGCGGCTCGCAGATATCATCGCAAGAAG
TAAGGCTAGTGACGGCGACATGGGGGGAGGGGCGCCGTGTAGTCGCGGCG
TCGACCACCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCC
GCCAGGGACCCGGCGACGGGAGTAACGGTGGAGGGCGGGGTGGAACGAGA
GGGGGGCGGTTCCCGGCGACCGTCGGATGCCGAGCTCGAGCGGATCAACG
CGTGGGCGTTCGCCGGGGAGACGGTGCTGCACGGAACCCCCTCGGGGCTC
GACAACACGGTCAGCTGCTACGGCGGGGCGATAAAGTTCGTAAAGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83225:5..502-

>mRNA_Ecto-sp13_S_contig83225.19680.1 ID=mRNA_Ecto-sp13_S_contig83225.19680.1|Name=mRNA_Ecto-sp13_S_contig83225.19680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83225:5..502- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCCCACACAAATACGTCATTATCCTGCGCGCTGCGTTTTTTTTTATT
TTGTATGAGTCACAGGGCCGGGGCACGGGGGCTATCCTTAAGGGCGTTTA
GCGCTTCCCTCCCGGTAGGGGCGGGCCTGGGGTCTTCGGCTGCTCTTTGC
GTAGCTACCTCGGCTGCCCTCACGCGGCTCGCAGATATCATCGCAAGAAT
AACGGTGGAGGGCGGGGTGGAACGAGAGGGGGGCGGTTCCCGGCGACCGT
CGGATGCCGAGCTCGAGCGGATCAACGCGTGGGCGTTCGCCGGGGAGACG
GTGCTGCACGGAACCCCCTCGGGGCTCGACAACACGGTCAGCTGCTACGG
CGGGGCGATAAAGTTCGTAAAGGGC
back to top