mRNA_Ecto-sp13_S_contig8321.19676.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8321.19676.1
Unique Name	mRNA_Ecto-sp13_S_contig8321.19676.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 6.520e-56
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRLK 315
            F  QDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIK+ +  L+
Sbjct: 1733 FREQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKITDAMLR 1837

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.080e-55
Identity = 96/105 (91.43%), Postives = 100/105 (95.24%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRLK 315
            F  QDV+VTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIK+ +  L+
Sbjct: 2032 FREQDVNVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKITDAMLR 2136

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A6U3UDH6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UDH6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.780e-22
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRL 312
            F   D++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+ TLL  DLE +MTYL+ FP  ++  L  + L+P AL IK+    L
Sbjct: 1091 FEHHDLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPTLLNHDLEGMMTYLNTFPDATL--LRADILIPCALQIKITNKML 1192

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: K0TEX3_THAOC (Rab-GAP TBC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEX3_THAOC)

HSP 1 Score: 100 bits (249), Expect = 1.790e-22
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1

Query:   10 QDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKV 297
             D++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+ TLL  DLE +MTYL+ FP  ++  L ++ L+P AL IK+
Sbjct: 1231 HDLNVGLFALGWFQTLFLYLPSMPSTTVCHMWDIWLIERSFKIFFRVGTAILFLSQPTLLNHDLEGMMTYLNTFPDATL--LRRDILIPCALQIKI 1324

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A7S1FQF6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQF6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.390e-21
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRL 312
            F   D++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+  LL  DLE +M YL+ FP  ++  L  + L+P AL IKV    L
Sbjct:  338 FEHHDLNVGLFALGWFQTLFLYIPSMPSATVCHMWDIWIVERSFKIFFRVGTAILYLSQPILLNNDLEGMMIYLNTFPDATL--LNPDILIPCALQIKVTNSML 439

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A7S1D5P5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5P5_CYCTE)

HSP 1 Score: 94.7 bits (234), Expect = 2.390e-21
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRLK 315
            F   +++V  FA+GWFQTLFLY   MPS T+  LWD W+ ERS+K+FFR   AIL LS+  LL  DLE +MTYL+ FP  ++  L  + L+  AL IK+    L+
Sbjct:  163 FDHHELNVGLFALGWFQTLFLYLPSMPSATVCHLWDIWLVERSFKIFFRVGTAILFLSQPILLNHDLEGMMTYLNTFPDATL--LNPDILIACALQIKITNKMLE 265

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A7R9ZRK5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRK5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.930e-21
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRL 312
            F   +++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+  LL  +LE +MTYL+ FP  ++  L  + L+  AL+IKV    L
Sbjct:  109 FEHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHELEGMMTYLNTFPDATL--LNPDILIACALNIKVTNSML 210

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A448ZG68_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZG68_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.060e-21
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRLK 315
            F   D++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFRA  AIL LS+  LL  +LE +MTYL+  P  ++  L  + L+P AL+IKV    L+
Sbjct: 2025 FEHHDLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRAGTAILFLSQPILLNHELEGMMTYLNTIPDATL--LRPDILIPCALNIKVTNRMLQ 2127

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A7S4EKG8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKG8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-20
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRLK 315
            F   D++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+  LL  +LE +MTYL+  P  ++  L  + L+P AL+IKV    L+
Sbjct: 1549 FEHHDLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHELEGMMTYLNTIPDATL--LRPDILIPCALNIKVTNQMLQ 1651

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BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Match: A0A7S2U8X4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8X4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.120e-20
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1

Query:    1 FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRAALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVCEPRL 312
            F   +++V  FA+GWFQTLFLY   MPS T+  +WD W+ ERS+K+FFR   AIL LS+  LL  DLE +MTYL+ FP  ++  L  + L+  AL IKV    L
Sbjct:  229 FEHHELNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKIFFRVGTAILFLSQPILLNHDLEGMMTYLNTFPDATL--LNPDILIACALQIKVTNKML 330

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8321.19676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LIK8_ECTSI	6.520e-56	92.38	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5L5V9_9PHAE	3.080e-55	91.43	Rab-GAP TBC domain-containing protein n=1 Tax=Ecto...	[more]
A0A6U3UDH6_9STRA	1.780e-22	50.96	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
K0TEX3_THAOC	1.790e-22	53.13	Rab-GAP TBC domain-containing protein n=1 Tax=Thal...	[more]
A0A7S1FQF6_9STRA	1.390e-21	50.00	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S1D5P5_CYCTE	2.390e-21	48.57	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A7R9ZRK5_9STRA	3.930e-21	48.08	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]
A0A448ZG68_9STRA	4.060e-21	49.52	Rab-GAP TBC domain-containing protein n=1 Tax=Pseu...	[more]
A0A7S4EKG8_9STRA	1.020e-20	48.57	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A7S2U8X4_9STRA	1.120e-20	49.04	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8321	contig	Ecto-sp13_S_contig8321:40..778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	197.6
Seed ortholog evalue	2.9e-48
Seed eggNOG ortholog	2880.D8LIK8
Model size	315
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	regulation of vesicle fusion
EggNOG OGs	COG5210@1,KOG1102@2759
Cds size	315
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464102.3846343-CDS-Ecto-sp13_S_contig8321:39..174	1681464102.3846343-CDS-Ecto-sp13_S_contig8321:39..174	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8321 40..174 +
1681464102.4008183-CDS-Ecto-sp13_S_contig8321:598..778	1681464102.4008183-CDS-Ecto-sp13_S_contig8321:598..778	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8321 599..778 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8321.19676.1	prot_Ecto-sp13_S_contig8321.19676.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8321 40..778 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8321:40..778+
coding sequence from alignment at Ecto-sp13_S_contig8321:40..778+

protein sequence of mRNA_Ecto-sp13_S_contig8321.19676.1

>prot_Ecto-sp13_S_contig8321.19676.1 ID=prot_Ecto-sp13_S_contig8321.19676.1|Name=mRNA_Ecto-sp13_S_contig8321.19676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
FPVQDVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKVFFRA
ALAILKLSELTLLQLDLESIMTYLSQFPHESVWVLEKENLVPTALSIKVC
EPRLK

mRNA from alignment at Ecto-sp13_S_contig8321:40..778+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8321.19676.1 ID=mRNA_Ecto-sp13_S_contig8321.19676.1|Name=mRNA_Ecto-sp13_S_contig8321.19676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8321:40..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCCCGTGCAGGACGTGGATGTGACGTTCTTTGCCGTGGGATGGTTCCA
GACGTTGTTCCTGTACAACTCGCGGATGCCCTCCGACACGCTGCTGTGGC
TGTGGGACAACTGGGTCACGGAACGATCGTACAAGGTACGGGAGGTGACG
GTATGGTTGATAGGAACTCCGTGCGTAATTATCGTTTAGTCTACACAGTT
GTTCTTTGCAGGGTGGATACGCTGGTACGGTTCGTGTGAAAAATGATGGA
TTCATCTTGTTCCTCCCATGCTGCACTCACAGGTGTGTGGTTAGCAACGC
AACAACGATTCATTGAGTTTGCATCCACCACGCTTGGGATAGTTCTGGGA
TTAGCTTTGGAGAGACTGACTGTCTCAGCGGGTTTCTATTTAGTGTGGGC
GCTCAACTCTGAAGCACCGCCACCGCGGCGGCCGTTTGCAGGGCCCTCTG
TACTCGGCATCCCCGGACTGTGTGTGGTGTGGGCGCTCAACGCTGTGTCG
CCGCCGCCGCCGCCGATTTGACGGTGCTCTGCTGCCTACCATTGCCGTTG
TCGAAGCAGGTGTTCTTCCGGGCCGCGCTGGCTATCCTCAAGCTGTCGGA
GCTAACCCTCCTGCAGCTCGACCTGGAGTCCATCATGACCTACCTCAGCC
AGTTCCCGCACGAGAGCGTGTGGGTGCTGGAGAAGGAGAACCTCGTGCCG
ACGGCCCTTTCCATCAAGGTGTGTGAGCCTAGACTAAAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8321:40..778+

>mRNA_Ecto-sp13_S_contig8321.19676.1 ID=mRNA_Ecto-sp13_S_contig8321.19676.1|Name=mRNA_Ecto-sp13_S_contig8321.19676.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8321:40..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCCCGTGCAGGACGTGGATGTGACGTTCTTTGCCGTGGGATGGTTCCA
GACGTTGTTCCTGTACAACTCGCGGATGCCCTCCGACACGCTGCTGTGGC
TGTGGGACAACTGGGTCACGGAACGATCGTACAAGGTGTTCTTCCGGGCC
GCGCTGGCTATCCTCAAGCTGTCGGAGCTAACCCTCCTGCAGCTCGACCT
GGAGTCCATCATGACCTACCTCAGCCAGTTCCCGCACGAGAGCGTGTGGG
TGCTGGAGAAGGAGAACCTCGTGCCGACGGCCCTTTCCATCAAGGTGTGT
GAGCCTAGACTAAAA