prot_Ecto-sp13_S_contig83169.19672.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig83169.19672.1
Unique Nameprot_Ecto-sp13_S_contig83169.19672.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length70
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83169.19672.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.230e-37
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            MRAGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  302 MRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370
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BLAST of mRNA_Ecto-sp13_S_contig83169.19672.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 8.440e-37
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    2 RAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            RAGKLSR+ILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:  235 RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302
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BLAST of mRNA_Ecto-sp13_S_contig83169.19672.1 vs. uniprot
Match: D7FIU8_ECTSI (Ribosomal_S5_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.370e-26
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:   21 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 69
            CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA
Sbjct:    3 CKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83169.19672.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI6.230e-3798.55S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI8.440e-3798.53S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
D7FIU8_ECTSI9.370e-26100.00Ribosomal_S5_C domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 1..53
e-value: 2.4E-12
score: 46.1
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..62
e-value: 1.2E-11
score: 46.0
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83169contigEcto-sp13_S_contig83169:33..556 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83169.19672.1mRNA_Ecto-sp13_S_contig83169.19672.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig83169 33..556 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig83169.19672.1 ID=prot_Ecto-sp13_S_contig83169.19672.1|Name=mRNA_Ecto-sp13_S_contig83169.19672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MRAGKLSREILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIA
RGRGKRILSLQREMAGRFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005324Ribosomal_S5_C
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold