mRNA_Ecto-sp13_S_contig83166.19671.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83166.19671.1
Unique NamemRNA_Ecto-sp13_S_contig83166.19671.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83166.19671.1 vs. uniprot
Match: A0A6H5L7C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.540e-30
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:   34 RCPECAELLRGSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC 204
            RCPECAELLR SQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC
Sbjct:  472 RCPECAELLRSSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC 528
[Close]
BLAST of mRNA_Ecto-sp13_S_contig83166.19671.1 vs. uniprot
Match: D8LF73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF73_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.370e-29
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:   34 RCPECAELLRGSQIVQHIRSTCRLLPCTLCSRLLLPADRERHVEEACPNRRRSCMRC 204
            RCPECAELLR SQIVQHIRSTCRLLPCT CSRLLLPADRERHVEEACPNRRRSCMRC
Sbjct:  697 RCPECAELLRSSQIVQHIRSTCRLLPCTHCSRLLLPADRERHVEEACPNRRRSCMRC 753
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83166.19671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7C1_9PHAE2.540e-3098.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF73_ECTSI2.370e-2996.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83166contigEcto-sp13_S_contig83166:365..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.2
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LF73
Preferred nameENAH
Model size204
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
Cds size204
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.7935047-CDS-Ecto-sp13_S_contig83166:364..5681681464101.7935047-CDS-Ecto-sp13_S_contig83166:364..568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83166 365..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83166.19671.1prot_Ecto-sp13_S_contig83166.19671.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83166 365..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83166.19671.1

>prot_Ecto-sp13_S_contig83166.19671.1 ID=prot_Ecto-sp13_S_contig83166.19671.1|Name=mRNA_Ecto-sp13_S_contig83166.19671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
ILRIRCPRNTTRCPECAELLRGSQIVQHIRSTCRLLPCTLCSRLLLPADR
ERHVEEACPNRRRSCMRC
back to top

mRNA from alignment at Ecto-sp13_S_contig83166:365..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83166.19671.1 ID=mRNA_Ecto-sp13_S_contig83166.19671.1|Name=mRNA_Ecto-sp13_S_contig83166.19671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83166:365..568+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTTCGGATTCGTTGTCCTCGCAACACAACTAGGTGTCCCGAATGCGC
GGAGCTCCTGAGGGGCTCTCAGATCGTGCAGCACATCCGGTCGACGTGCA
GGCTGCTCCCATGCACCCTCTGCTCGCGCCTCCTCCTGCCCGCCGACCGG
GAGCGGCACGTGGAGGAGGCGTGTCCAAACCGCCGTCGGAGCTGCATGCG
CTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83166:365..568+

>mRNA_Ecto-sp13_S_contig83166.19671.1 ID=mRNA_Ecto-sp13_S_contig83166.19671.1|Name=mRNA_Ecto-sp13_S_contig83166.19671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83166:365..568+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTTCGGATTCGTTGTCCTCGCAACACAACTAGGTGTCCCGAATGCGC
GGAGCTCCTGAGGGGCTCTCAGATCGTGCAGCACATCCGGTCGACGTGCA
GGCTGCTCCCATGCACCCTCTGCTCGCGCCTCCTCCTGCCCGCCGACCGG
GAGCGGCACGTGGAGGAGGCGTGTCCAAACCGCCGTCGGAGCTGCATGCG
CTGC
back to top