mRNA_Ecto-sp13_S_contig8316.19670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI) HSP 1 Score: 259 bits (662), Expect = 2.140e-75 Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEALSPICPASSR 988
QIWLKREEMAHTG QE NNAMAQALLAKRVGK+RVVA TGSGQH VATATACA LGMECTVFMGAVDCQRQKLNL KMK+L AQVVPVEQG RKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMV+EFQSVVGEEALS + + R
Sbjct: 356 QIWLKREEMAHTGAQEINNAMAQALLAKRVGKTRVVAATGSGQHGVATATACALLGMECTVFMGAVDCQRQKLNLVKMKILGAQVVPVEQGDRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVKEFQSVVGEEALSQVVEQAGR 506
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI) HSP 1 Score: 208 bits (530), Expect = 4.850e-56 Identity = 98/145 (67.59%), Postives = 122/145 (84.14%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEALSPI 970
QIWLKREE++HTG + NNA+ QALLAKR+GK+R++A TG+GQH VATAT CA LGMEC ++MGAVDC+RQKLN+F+MKML A+VVPVE G R LKDAINEAMR V V DT++L+ S + PHPFPT+VR+FQ+V+G+EA S I
Sbjct: 417 QIWLKREELSHTGAHKINNAVGQALLAKRIGKNRIIAETGAGQHGVATATVCALLGMECIIYMGAVDCERQKLNVFRMKMLGAKVVPVESGSRTLKDAINEAMRDWVTNVVDTHYLIGSAIGPHPFPTIVRDFQAVIGKEARSQI 561
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A0L0SEW7_ALLM3 (Tryptophan synthase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SEW7_ALLM3) HSP 1 Score: 196 bits (497), Expect = 1.130e-54 Identity = 91/142 (64.08%), Postives = 117/142 (82.39%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEAL 961
+IWLKRE++ HTG+ + NNA+ Q LLAKR+GKSR++A TG+GQH VATAT CA LG+EC V+MGA DC+RQ+LN+F++++L A+VVPVE G R LKDAINEAMR V V T++LV S + PHPFPT+VREFQSV+G EA+
Sbjct: 21 RIWLKREDLNHTGSHKINNAVGQILLAKRLGKSRIIAETGAGQHGVATATVCAKLGLECVVYMGAADCERQRLNVFRIQLLGAKVVPVESGSRTLKDAINEAMRDWVTNVHSTHYLVGSAIGPHPFPTLVREFQSVIGREAM 162
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A835YUB9_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB9_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.510e-53 Identity = 91/141 (64.54%), Postives = 113/141 (80.14%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEA 958
QIWLKREE+AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATAT CA +GMEC ++MGAVD +RQKLN+F+M ML A+V+PV G + LKDAINEAMR V V T++L+ + PHPFPTMVR+FQSV+G EA
Sbjct: 70 QIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALMGMECIIYMGAVDVERQKLNVFRMNMLGAKVIPVTSGSKTLKDAINEAMRDWVTNVRTTHYLIGTATGPHPFPTMVRDFQSVIGREA 210
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA) HSP 1 Score: 201 bits (512), Expect = 2.010e-53 Identity = 95/141 (67.38%), Postives = 116/141 (82.27%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEA 958
QIWLKREE+AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATAT CA LGMEC V+MG VDC+RQKLN+F+M ML A+VVPV G R LKDAINEAMR V V DT++L+ S + PHPFPT+VR+FQSV+G+E+
Sbjct: 435 QIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLNVFRMNMLGAKVVPVTSGSRTLKDAINEAMRDWVTNVRDTHYLIGSAIGPHPFPTIVRDFQSVIGKES 575
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A7S2XS31_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS31_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.150e-53 Identity = 91/139 (65.47%), Postives = 116/139 (83.45%), Query Frame = 2
Query: 539 IWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEE 955
IWLKRE++AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATAT CA LG++CTV+MGAVDC+RQKLN+F+M L A+V+PV+ G R LKDAINEAMR V V DT++L+ S V PHPFPT+VR+FQS++G+E
Sbjct: 272 IWLKREDLAHTGAHKINNAIGQALLAKRLGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVDCERQKLNVFRMNTLGAKVIPVQDGQRTLKDAINEAMRDWVTNVRDTHYLIGSAVGPHPFPTIVRDFQSIMGKE 410
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A7S3DQJ0_9STRA (Tryptophan synthase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQJ0_9STRA) HSP 1 Score: 192 bits (489), Expect = 2.310e-53 Identity = 91/139 (65.47%), Postives = 113/139 (81.29%), Query Frame = 2
Query: 539 IWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEE 955
IWLKRE++AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATAT CA +G+EC V+MGAVDC+RQKLN+F+M L A+VVPV G LKDAINEAMR V V DT++L+ S V PHPFPT+VR+FQSV+G+E
Sbjct: 37 IWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATICAKMGLECIVYMGAVDCERQKLNVFRMNTLGAKVVPVHDGQATLKDAINEAMRDWVTNVRDTHYLIGSAVGPHPFPTIVRDFQSVMGKE 175
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A6T8J103_9STRA (Tryptophan synthase n=3 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8J103_9STRA) HSP 1 Score: 196 bits (499), Expect = 4.740e-53 Identity = 91/139 (65.47%), Postives = 116/139 (83.45%), Query Frame = 2
Query: 539 IWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEE 955
IWLKRE++AHTG + NNA+ QAL+AKR+GK R++A TG+GQH VATAT CA LG++CT++MGAVDC+RQKLN+F+M L A+VVPV+ G R LKDAINEAMR V V DT++L+ S V PHPFPT+VR+FQSV+G+E
Sbjct: 215 IWLKREDLAHTGAHKINNAIGQALMAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTIYMGAVDCERQKLNVFRMNTLGAKVVPVQDGQRTLKDAINEAMRDWVTNVRDTHYLIGSAVGPHPFPTVVRDFQSVMGKE 353
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI) HSP 1 Score: 198 bits (504), Expect = 6.460e-53 Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEA 958
QIWLKREE+AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATAT CA LGMEC V+MG VDC+RQKLN+F+M ML A+VVPV+ G R LKDAINEAMR V V T++L+ S + PHPFP +VR+FQSV+G+EA
Sbjct: 326 QIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLNVFRMNMLGAKVVPVKSGSRTLKDAINEAMRDWVTNVRTTHYLIGSAIGPHPFPKIVRDFQSVIGKEA 466
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Match: A0A7S0MB55_9CRYP (Tryptophan synthase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MB55_9CRYP) HSP 1 Score: 195 bits (496), Expect = 7.650e-53 Identity = 93/141 (65.96%), Postives = 115/141 (81.56%), Query Frame = 2
Query: 536 QIWLKREEMAHTGTQESNNAMAQALLAKRVGKSRVVAVTGSGQHRVATATACAPLGMECTVFMGAVDCQRQKLNLFKMKMLDAQVVPVEQGGRKLKDAINEAMRHCVATVADTYFLVSSTVAPHPFPTMVREFQSVVGEEA 958
QIWLKREE+AHTG + NNA+ QALLAKR+GK R++A TG+GQH VATATACA +GM+ TV+MGA DC+RQ LN+F+MKML A VVPV G LKDAINEAMR V V DT++++ S + PHPFPT+VR+FQSV+G+EA
Sbjct: 361 QIWLKREELAHTGAHKINNAIGQALLAKRLGKKRIIAETGAGQHGVATATACALMGMDLTVYMGAEDCRRQSLNVFRMKMLGATVVPVSTGSATLKDAINEAMRDWVTNVRDTHYIIGSAIGPHPFPTIVRDFQSVIGKEA 501 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8316.19670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8316.19670.1 >prot_Ecto-sp13_S_contig8316.19670.1 ID=prot_Ecto-sp13_S_contig8316.19670.1|Name=mRNA_Ecto-sp13_S_contig8316.19670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp MCIRSCSTGRCKYPRPIVGCPRPGHAKYSLWAPTAQTRDIVEPRAAHWPLback to top mRNA from alignment at Ecto-sp13_S_contig8316:5281..6944+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8316.19670.1 ID=mRNA_Ecto-sp13_S_contig8316.19670.1|Name=mRNA_Ecto-sp13_S_contig8316.19670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1664bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8316:5281..6944+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8316:5281..6944+ >mRNA_Ecto-sp13_S_contig8316.19670.1 ID=mRNA_Ecto-sp13_S_contig8316.19670.1|Name=mRNA_Ecto-sp13_S_contig8316.19670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8316:5281..6944+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |