prot_Ecto-sp13_S_contig83118.19667.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig83118.19667.1
Unique Nameprot_Ecto-sp13_S_contig83118.19667.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.690e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 48
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 158
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BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.840e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 48
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI1.690e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE6.840e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..48
e-value: 2.1E-13
score: 52.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..34
e-value: 5.8E-7
score: 27.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..45
e-value: 7.8E-12
score: 45.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 33..48
score: 6.182
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..32
score: 9.712

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83118contigEcto-sp13_S_contig83118:12..155 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83118.19667.1mRNA_Ecto-sp13_S_contig83118.19667.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig83118 12..155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig83118.19667.1 ID=prot_Ecto-sp13_S_contig83118.19667.1|Name=mRNA_Ecto-sp13_S_contig83118.19667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat