mRNA_Ecto-sp13_S_contig83118.19667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83118.19667.1
Unique NamemRNA_Ecto-sp13_S_contig83118.19667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.690e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 144
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
Sbjct:  111 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 158
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BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.840e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 144
            VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
Sbjct:  298 VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83118.19667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI1.690e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE6.840e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83118contigEcto-sp13_S_contig83118:12..155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.3
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D7FKL0
Model size144
KEGG koko:K17710
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.5574057-CDS-Ecto-sp13_S_contig83118:11..1551681464101.5574057-CDS-Ecto-sp13_S_contig83118:11..155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83118 12..155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83118.19667.1prot_Ecto-sp13_S_contig83118.19667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83118 12..155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83118.19667.1

>prot_Ecto-sp13_S_contig83118.19667.1 ID=prot_Ecto-sp13_S_contig83118.19667.1|Name=mRNA_Ecto-sp13_S_contig83118.19667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
VYNSAITLCARSKQGKRAVGLLKEMLAEGLSPDVVTFSAVISACCGGG
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mRNA from alignment at Ecto-sp13_S_contig83118:12..155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83118.19667.1 ID=mRNA_Ecto-sp13_S_contig83118.19667.1|Name=mRNA_Ecto-sp13_S_contig83118.19667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83118:12..155+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCGTCACCTTCTCGGCCGTGATCTCGGCGTGCTGCGGTGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83118:12..155+

>mRNA_Ecto-sp13_S_contig83118.19667.1 ID=mRNA_Ecto-sp13_S_contig83118.19667.1|Name=mRNA_Ecto-sp13_S_contig83118.19667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83118:12..155+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATACAACTCGGCCATCACCCTATGCGCCCGCAGCAAGCAGGGCAAGAG
GGCGGTGGGCCTCCTGAAGGAGATGCTGGCGGAGGGGCTTAGCCCCGACG
TCGTCACCTTCTCGGCCGTGATCTCGGCGTGCTGCGGTGGCGGC
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