mRNA_Ecto-sp13_S_contig8311.19665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8311.19665.1
Unique NamemRNA_Ecto-sp13_S_contig8311.19665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 1.450e-111
Identity = 222/247 (89.88%), Postives = 229/247 (92.71%), Query Frame = 2 
Query:  239 MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLAEPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLAGGDVAAASAAAGPMCGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHSNNKNDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTK 979
            MVSVAFSSAFHDASAG DSLNFHTFELALKDVDGDTSDAADPAE+RAGLAEPSK ARRGSVFMVAT PATPEAAAD LEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXX     MYRQTSAHRLFRAAPPEPKRQQWKVC++TPLAG + A+ SAAA PM GEDSRLRSSSWHAXXXXXXXXXXXXGLEYGH+NNKNDRFFPKRIV RDDREVLDGSDVLQQISNLTSTEPSNEREV V G +
Sbjct:    1 MVSVAFSSAFHDASAGRDSLNFHTFELALKDVDGDTSDAADPAEQRAGLAEPSKPARRGSVFMVATPPATPEAAADSLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYRQTSAHRLFRAAPPEPKRQQWKVCEKTPLAGDETASTSAAAAPMSGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNKNDRFFPKRIVCRDDREVLDGSDVLQQISNLTSTEPSNEREVFVGGLR 247
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BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 2.490e-102
Identity = 203/247 (82.19%), Postives = 209/247 (84.62%), Query Frame = 2 
Query:  239 MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLAEPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLAGGDVAAASAAAGPMCGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHSNNKNDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTK 979
            MVS++FSSAFHD S G DSLNFHTFE ALKD+DGDTSDAADPAEERAGLAEPSK AR GSVF VAT PATPEAAAD LEGEQ   XXXXXXXXXXXXXXXXXXXXXXXXXX  KPA AMYRQ SAHRLFRAAPPEPKRQQWKVC+ETPLAG D  AASAAA PMCGEDSRLRS SWHA            GLEY HSN KNDRFFPKRIVGRDDREVLDGSDVLQQISN+TSTEPSNEREV V G +
Sbjct:    1 MVSLSFSSAFHDVSVGRDSLNFHTFERALKDMDGDTSDAADPAEERAGLAEPSKPARHGSVFAVATPPATPEAAADRLEGEQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKPAVAMYRQMSAHRLFRAAPPEPKRQQWKVCEETPLAGDDTVAASAAASPMCGEDSRLRSLSWHASDCSRRSPPPPPGLEYSHSNRKNDRFFPKRIVGRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLR 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM19_ECTSI1.450e-11189.88RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
A0A6H5JCH7_9PHAE2.490e-10282.19RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8311contigEcto-sp13_S_contig8311:982..2478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score339.7
Seed ortholog evalue1.1e-90
Seed eggNOG ortholog2880.D7FM19
Model size1190
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00850,ko:K03006,ko:K13024
KEGG ReactionR00435,R00441,R00442,R00443,R00756,R03236,R03237,R03238,R03239,R04779,R05799,R08964
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00230,ko00240,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko03020,ko04070,ko04152,ko05016,ko05168,ko05169,ko05230,map00010,map00030,map00051,map00052,map00230,map00240,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map03020,map04070,map04152,map05016,map05168,map05169,map05230
KEGG ModuleM00001,M00180,M00345
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
Ec32 ortholog descriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein
Ec32 orthologEc-01_010330.3
EC2.7.1.11,2.7.4.24,2.7.7.6
Cds size762
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.4223669-UTR-Ecto-sp13_S_contig8311:981..11711681464101.4223669-UTR-Ecto-sp13_S_contig8311:981..1171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8311 982..1171 -
1681464101.4570165-UTR-Ecto-sp13_S_contig8311:2240..24781681464101.4570165-UTR-Ecto-sp13_S_contig8311:2240..2478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8311 2241..2478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.438863-CDS-Ecto-sp13_S_contig8311:1171..12851681464101.438863-CDS-Ecto-sp13_S_contig8311:1171..1285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8311 1172..1285 -
1681464101.4479868-CDS-Ecto-sp13_S_contig8311:1592..22401681464101.4479868-CDS-Ecto-sp13_S_contig8311:1592..2240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8311 1593..2240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8311.19665.1prot_Ecto-sp13_S_contig8311.19665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8311 1172..2240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8311.19665.1

>prot_Ecto-sp13_S_contig8311.19665.1 ID=prot_Ecto-sp13_S_contig8311.19665.1|Name=mRNA_Ecto-sp13_S_contig8311.19665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLA
EPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHHHHQQQQQQQQQQAE
PPAPAPASSSSAGKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLA
GGDVAAASAAAGPMCGEDSRLRSSSWHASDSSRRSPPPPPGLEYGHSNNK
NDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTKGQL
AFP*
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mRNA from alignment at Ecto-sp13_S_contig8311:982..2478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8311.19665.1 ID=mRNA_Ecto-sp13_S_contig8311.19665.1|Name=mRNA_Ecto-sp13_S_contig8311.19665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8311:982..2478- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAAAGAGGCGCAGACCACAACAGTGCAACAGACCTCCAAACAGCCAAA
AAGTGGGTTAAACGACCAGCCCCTGTACTCCCCCGCCCTATTGAGGCCTA
CAACCACTTCATTTTCCCAGCCGAAAACAACCCCCCGCCCTCAGGTCTTG
AGGTTGTTTGACGAAGAACGCCCTTGTGCCTAGCACGGGCCTAGGGAGGA
GAGAAGGTAGCAGCAGCACCCACGTGTGCGGGGGGTCCATGGTCTCCGTA
GCGTTTTCGTCGGCCTTTCACGATGCCTCTGCCGGGTGCGATTCGCTAAA
CTTCCACACCTTTGAGCTCGCTCTCAAGGACGTGGATGGAGACACGAGCG
ACGCGGCCGACCCCGCCGAGGAGAGGGCCGGGTTGGCGGAACCCTCCAAG
CTGGCACGGCGCGGCTCCGTTTTTATGGTGGCCACATCGCCAGCCACGCC
AGAGGCGGCGGCAGATGGCCTAGAGGGCGAGCAGCGCATTCATCATCATC
ATCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGCTGAACCGCCGGCGCCT
GCGCCGGCGTCCTCCTCCTCAGCAGGAAAGCCGGCGGCGGCGATGTACAG
GCAGACGTCCGCGCACAGACTGTTTCGCGCCGCTCCACCCGAGCCTAAGA
GGCAGCAATGGAAGGTATGCCAGGAGACTCCGCTCGCCGGCGGCGACGTC
GCCGCCGCCTCCGCCGCCGCCGGTCCCATGTGCGGGGAGGACTCGAGGCT
GCGCTCCTCGTCCTGGCACGCCTCGGACAGCAGCAGACGGTCCCCTCCTC
CTCCCCCTGGACTGGAGTATGGCCACAGCAACAACAAGAACGACCGCTTC
TTCCCCAAGAGGATTGTAGGCCGCGACGACAGAGAGGTGCGAGTTGTTGC
GTTATCGTCGTGTCGGTGTTTCCACCTACGGTTGTTTGCTCGGCGGGCTC
AACCTGCCTTGCCCATATGAGACAGAGAGACCCGGCAGCAGAAAACTTAC
GCGCAGCAAATGTTTATTTTGTTTGCTTTGCTGTTTGGGTGACGCCACCT
GGAGACAAACACATGTTTTTTTTTCGCCCCCCTTCGCCAAAACCTGACAA
CCCAAACCTTCCTACTTGCTGTCACAGACGCGGTTGCATTGCCCTCCCTG
GTTTCCTAACTCCCTCCAACTCTCCTCTGTCTTCGTGGAGCAGGTGCTTG
ACGGCTCAGATGTCTTACAGCAAATATCGAACCTCACCAGCACAGAGCCC
AGCAATGAACGCGAGGTGAGCGTGCAAGGGACGAAGGGGCAACTTGCTTT
CCCGTGAAGTAGGAAGTCGAATCTTGCTTGTTCGGAGTCCAGGTCGGATT
CGGGCATTTCGACGTAAAAAATGCAACAGGTTCAACTCACACACTCACAC
CACGAGAAATTATTCACGTGCGTTTCGGTGATGTGTGGAAGGTTGGTTTG
CTCTGAACACGCTTGTGCAACGGATGAAATTTGGCGTGAACTCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8311:982..2478-

>mRNA_Ecto-sp13_S_contig8311.19665.1 ID=mRNA_Ecto-sp13_S_contig8311.19665.1|Name=mRNA_Ecto-sp13_S_contig8311.19665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8311:982..2478- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTCCGTAGCGTTTTCGTCGGCCTTTCACGATGCCTCTGCCGGGTG
CGATTCGCTAAACTTCCACACCTTTGAGCTCGCTCTCAAGGACGTGGATG
GAGACACGAGCGACGCGGCCGACCCCGCCGAGGAGAGGGCCGGGTTGGCG
GAACCCTCCAAGCTGGCACGGCGCGGCTCCGTTTTTATGGTGGCCACATC
GCCAGCCACGCCAGAGGCGGCGGCAGATGGCCTAGAGGGCGAGCAGCGCA
TTCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAGGCTGAA
CCGCCGGCGCCTGCGCCGGCGTCCTCCTCCTCAGCAGGAAAGCCGGCGGC
GGCGATGTACAGGCAGACGTCCGCGCACAGACTGTTTCGCGCCGCTCCAC
CCGAGCCTAAGAGGCAGCAATGGAAGGTATGCCAGGAGACTCCGCTCGCC
GGCGGCGACGTCGCCGCCGCCTCCGCCGCCGCCGGTCCCATGTGCGGGGA
GGACTCGAGGCTGCGCTCCTCGTCCTGGCACGCCTCGGACAGCAGCAGAC
GGTCCCCTCCTCCTCCCCCTGGACTGGAGTATGGCCACAGCAACAACAAG
AACGACCGCTTCTTCCCCAAGAGGATTGTAGGCCGCGACGACAGAGAGGT
GCTTGACGGCTCAGATGTCTTACAGCAAATATCGAACCTCACCAGCACAG
AGCCCAGCAATGAACGCGAGGTGAGCGTGCAAGGGACGAAGGGGCAACTT
GCTTTCCCGTGA
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