mRNA_Ecto-sp13_S_contig83106.19664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83106.19664.1
Unique NamemRNA_Ecto-sp13_S_contig83106.19664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: D7FQG0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.680e-18
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEE 120
            DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVS VLHEE
Sbjct:  158 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSLVLHEE 197
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A6H5K7T3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7T3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.160e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEE 120
            DFDYS I +GQLFRTTGATLEAVSTPGHT DHV+FVL EE
Sbjct:  122 DFDYSGIEDGQLFRTTGATLEAVSTPGHTVDHVAFVLREE 161
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A835Z429_9STRA (Zn dependent hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z429_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.900e-10
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 FDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEE 120
            F+YS I +GQ+F T GATL A+ TPGHT DHVSFVL EE
Sbjct:  162 FEYSDIADGQVFATQGATLRALRTPGHTSDHVSFVLQEE 200
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A0F7VCW6_PENBI (Putative Glyoxylase n=2 Tax=Penicillium brasilianum TaxID=104259 RepID=A0A0F7VCW6_PENBI)

HSP 1 Score: 58.5 bits (140), Expect = 7.710e-9
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            D  Y+ I +GQ+FR  GATL+A+ TPGHTEDH++FVL EE+
Sbjct:  108 DDKYADINDGQIFRVEGATLKALFTPGHTEDHMAFVLEEED 148
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A4V1XD18_9PEZI (Lactamase_B domain-containing protein n=1 Tax=Monosporascus sp. MG133 TaxID=2211645 RepID=A0A4V1XD18_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 9.160e-9
Identity = 27/41 (65.85%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            D D   I  GQ+FRT GATL AV TPGHT DH  FVL EEN
Sbjct:   48 DRDQQTITNGQIFRTQGATLRAVLTPGHTADHTCFVLEEEN 88
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: R7TP92_CAPTE (Lactamase_B domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TP92_CAPTE)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 YSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            Y+ IG+  +F T GATLEA+ TPGHT+DH++  LHEEN
Sbjct:  127 YTFIGDKHIFETEGATLEAMHTPGHTDDHMALYLHEEN 164
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A1S3I8Z0_LINUN (endoribonuclease LACTB2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I8Z0_LINUN)

HSP 1 Score: 57.4 bits (137), Expect = 2.000e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 YSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            YS I +G++F+T G TL AV TPGHT+DH+SF L EEN
Sbjct:  120 YSFIEDGKVFKTEGGTLRAVYTPGHTDDHLSFYLEEEN 157
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: S7ZR65_PENO1 (Lactamase_B domain-containing protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S7ZR65_PENO1)

HSP 1 Score: 57.4 bits (137), Expect = 2.050e-8
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 DYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            +Y+ I +GQ+FR  GATL+A+ TPGHTEDH++FVL EE+
Sbjct:  113 EYARIEDGQVFRVEGATLKALFTPGHTEDHMAFVLEEED 151
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A4S8SMY7_AURPU (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S8SMY7_AURPU)

HSP 1 Score: 56.6 bits (135), Expect = 3.850e-8
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            +FD   I +GQ+FR  GAT+ A+ +PGH++DH+ FVL EEN
Sbjct:  131 EFDQQSISDGQIFRVEGATIRAIYSPGHSQDHMCFVLEEEN 171
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BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Match: A0A8J8WI24_9EURO (Lactamase_B domain-containing protein n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8WI24_9EURO)

HSP 1 Score: 56.6 bits (135), Expect = 3.870e-8
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    7 DYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEEN 123
            DY+ I +GQ+F   GATL+A+ TPGHTEDH++FVL EE+
Sbjct:  110 DYATIVDGQVFGVEGATLKALFTPGHTEDHMAFVLEEED 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83106.19664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG0_ECTSI2.680e-1897.50Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K7T3_9PHAE5.160e-1485.00Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z429_9STRA9.900e-1069.23Zn dependent hydrolase n=1 Tax=Tribonema minus Tax... [more]
A0A0F7VCW6_PENBI7.710e-960.98Putative Glyoxylase n=2 Tax=Penicillium brasilianu... [more]
A0A4V1XD18_9PEZI9.160e-965.85Lactamase_B domain-containing protein n=1 Tax=Mono... [more]
R7TP92_CAPTE1.470e-860.53Lactamase_B domain-containing protein n=1 Tax=Capi... [more]
A0A1S3I8Z0_LINUN2.000e-863.16endoribonuclease LACTB2 n=1 Tax=Lingula unguis Tax... [more]
S7ZR65_PENO12.050e-861.54Lactamase_B domain-containing protein n=1 Tax=Peni... [more]
A0A4S8SMY7_AURPU3.850e-853.66Lactamase_B domain-containing protein (Fragment) n... [more]
A0A8J8WI24_9EURO3.870e-861.54Lactamase_B domain-containing protein n=1 Tax=Peni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83106contigEcto-sp13_S_contig83106:4..144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score84.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D7FQG0
Preferred nameLACTB2
Model size141
KEGG koko:K15318
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016070,GO:0016787,GO:0016788,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0031974,GO:0032787,GO:0034641,GO:0036182,GO:0036184,GO:0042180,GO:0042181,GO:0042537,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046189,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070013,GO:0071704,GO:0072330,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900600,GO:1900602,GO:1900813,GO:1900815,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
Exons1
EggNOG free text desc.hydroxyacylglutathione hydrolase activity
EggNOG OGsCOG0491@1,KOG0813@2759
Cds size141
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.377413-CDS-Ecto-sp13_S_contig83106:3..1441681464101.377413-CDS-Ecto-sp13_S_contig83106:3..144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83106 4..144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83106.19664.1prot_Ecto-sp13_S_contig83106.19664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83106 4..144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83106.19664.1

>prot_Ecto-sp13_S_contig83106.19664.1 ID=prot_Ecto-sp13_S_contig83106.19664.1|Name=mRNA_Ecto-sp13_S_contig83106.19664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
DFDYSIIGEGQLFRTTGATLEAVSTPGHTEDHVSFVLHEENVRALW*
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mRNA from alignment at Ecto-sp13_S_contig83106:4..144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83106.19664.1 ID=mRNA_Ecto-sp13_S_contig83106.19664.1|Name=mRNA_Ecto-sp13_S_contig83106.19664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83106:4..144- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTCGACTACTCAATCATCGGAGAAGGTCAACTGTTTCGAACAACCGG
AGCCACCCTTGAAGCGGTGTCCACCCCGGGACACACCGAAGACCACGTCT
CGTTTGTTCTTCATGAAGAAAATGTGAGAGCTCTGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83106:4..144-

>mRNA_Ecto-sp13_S_contig83106.19664.1 ID=mRNA_Ecto-sp13_S_contig83106.19664.1|Name=mRNA_Ecto-sp13_S_contig83106.19664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83106:4..144- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTCGACTACTCAATCATCGGAGAAGGTCAACTGTTTCGAACAACCGG
AGCCACCCTTGAAGCGGTGTCCACCCCGGGACACACCGAAGACCACGTCT
CGTTTGTTCTTCATGAAGAAAATGTGAGAGCTCTGTGGTGA
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