prot_Ecto-sp13_S_contig8310.19663.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8310.19663.1
Unique Nameprot_Ecto-sp13_S_contig8310.19663.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length169
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: D7G3V4_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V4_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.800e-62
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:    1 MRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEARSCVSRVGEKEE 117
            MRDGLKDIQAQ+RNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRR QLLLDY HHKRKHEAVEAR    + G+ EE
Sbjct:   36 MRDGLKDIQAQVRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRGQLLLDYGHHKRKHEAVEARRESGKGGDMEE 152
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: A0A6H5JGP2_9PHAE (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.870e-59
Identity = 100/107 (93.46%), Postives = 102/107 (95.33%), Query Frame = 0 
Query:    1 MRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEARS 107
            MRDGLKDIQAQ+RNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAK+R QLLLDYDHHKRKHEA    S
Sbjct:    1 MRDGLKDIQAQVRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKQRGQLLLDYDHHKRKHEAARRES 107
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: A0A836CHK5_9STRA (Rho GTPase activation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.160e-21
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 0 
Query:    2 RDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEAR 106
            RD L  +Q Q++ Y++A+E  F  A ++TFL AP +G+TA+ ++ +L +  V +A+++G+ E+L APL+AVL FCD +D L K R  L+LDYDHHKRK  A+  R
Sbjct:   26 RDNLALMQKQVKAYMVAVEAEFTMAQHLTFLHAPHTGDTAQFVEAALAKNPVHEALMKGMHEWLCAPLQAVLAFCDEVDALTKARAALVLDYDHHKRKLAAIAQR 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3V4_ECTSI1.800e-6290.60Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JGP2_9PHAE1.870e-5993.46Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CHK5_9STRA5.160e-2146.67Rho GTPase activation protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027267AH/BAR domain superfamilyGENE3D1.20.1270.60coord: 1..119
e-value: 5.1E-7
score: 31.4
IPR027267AH/BAR domain superfamilySUPERFAMILY103657BAR/IMD domain-likecoord: 5..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8310contigEcto-sp13_S_contig8310:902..3017 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8310.19663.1mRNA_Ecto-sp13_S_contig8310.19663.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8310 803..3412 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8310.19663.1 ID=prot_Ecto-sp13_S_contig8310.19663.1|Name=mRNA_Ecto-sp13_S_contig8310.19663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCR
VAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKH
EAVEARSCVSRVGEKEERRGHGNGGRKRGGGQRSKTVGRKGAKQGSFALV
TLKKGSSNHNNGVHVLLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027267AH/BAR_dom_sf