mRNA_Ecto-sp13_S_contig8310.19663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8310.19663.1
Unique NamemRNA_Ecto-sp13_S_contig8310.19663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: D7G3V4_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V4_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 3.650e-83
Identity = 136/149 (91.28%), Postives = 140/149 (93.96%), Query Frame = 1 
Query:    4 VGEKAIQKIGLAAPSNDANTGDIEQPLHSFLQMRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEARSCVSRVGEKEE 450
            VGEKAI KIGLAAPSNDANTGDIEQPLHSF+QMRDGLKDIQAQ+RNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRR QLLLDY HHKRKHEAVEAR    + G+ EE
Sbjct:    4 VGEKAILKIGLAAPSNDANTGDIEQPLHSFVQMRDGLKDIQAQVRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRGQLLLDYGHHKRKHEAVEARRESGKGGDMEE 152
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: A0A6H5JGP2_9PHAE (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 5.390e-57
Identity = 100/107 (93.46%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:  100 MRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEARS 420
            MRDGLKDIQAQ+RNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAK+R QLLLDYDHHKRKHEA    S
Sbjct:    1 MRDGLKDIQAQVRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKQRGQLLLDYDHHKRKHEAARRES 107
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BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Match: A0A836CHK5_9STRA (Rho GTPase activation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.410e-28
Identity = 62/130 (47.69%), Postives = 90/130 (69.23%), Query Frame = 1 
Query:   28 IGLAAPSNDANTGDIEQPLHSFLQMRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCRVAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKHEAVEAR 417
            +GLA PSND N+  +E PL  F Q RD L  +Q Q++ Y++A+E  F  A ++TFL AP +G+TA+ ++ +L +  V +A+++G+ E+L APL+AVL FCD +D L K R  L+LDYDHHKRK  A+  R
Sbjct:    1 MGLANPSNDENSASLEAPLAEFNQTRDNLALMQKQVKAYMVAVEAEFTMAQHLTFLHAPHTGDTAQFVEAALAKNPVHEALMKGMHEWLCAPLQAVLAFCDEVDALTKARAALVLDYDHHKRKLAAIAQR 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8310.19663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3V4_ECTSI3.650e-8391.28Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JGP2_9PHAE5.390e-5793.46Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CHK5_9STRA3.410e-2847.69Rho GTPase activation protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8310contigEcto-sp13_S_contig8310:803..3412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score207.2
Seed ortholog evalue5.9e-51
Seed eggNOG ortholog2880.D7G3V4
Model size1001
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
Cds size507
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.306315-UTR-Ecto-sp13_S_contig8310:802..9011681464101.306315-UTR-Ecto-sp13_S_contig8310:802..901Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8310 803..901 +
1681464101.3519015-UTR-Ecto-sp13_S_contig8310:3017..34121681464101.3519015-UTR-Ecto-sp13_S_contig8310:3017..3412Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8310 3018..3412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.3188267-CDS-Ecto-sp13_S_contig8310:901..9341681464101.3188267-CDS-Ecto-sp13_S_contig8310:901..934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8310 902..934 +
1681464101.3297331-CDS-Ecto-sp13_S_contig8310:1200..12961681464101.3297331-CDS-Ecto-sp13_S_contig8310:1200..1296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8310 1201..1296 +
1681464101.3428802-CDS-Ecto-sp13_S_contig8310:2639..30171681464101.3428802-CDS-Ecto-sp13_S_contig8310:2639..3017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8310 2640..3017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8310.19663.1prot_Ecto-sp13_S_contig8310.19663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8310 902..3017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8310.19663.1

>prot_Ecto-sp13_S_contig8310.19663.1 ID=prot_Ecto-sp13_S_contig8310.19663.1|Name=mRNA_Ecto-sp13_S_contig8310.19663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MRDGLKDIQAQIRNYVLAMEGLFGAAHNMTFLFAPLSGETAKQLKLSLCR
VAVQDAMIRGLTEYLEAPLKAVLDFCDGIDLLAKRRVQLLLDYDHHKRKH
EAVEARSCVSRVGEKEERRGHGNGGRKRGGGQRSKTVGRKGAKQGSFALV
TLKKGSSNHNNGVHVLLT*
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mRNA from alignment at Ecto-sp13_S_contig8310:803..3412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8310.19663.1 ID=mRNA_Ecto-sp13_S_contig8310.19663.1|Name=mRNA_Ecto-sp13_S_contig8310.19663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2610bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8310:803..3412+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGTCGGGGAGAAGGCGATCCAGAAGATTGGGCTGGCGGCACCGAGCAA
CGACGCAAACACCGGTGACATCGAGCAGCCACTCCACAGCTTCTTGCAGA
TGAGGGACGGCCTGAAGGACATACAGGCCCAGGTGACTACTTGCAGCAGC
CATCGCCGGCACGTTGGCACTTGCCAACACAGATACGAGGCGTAGCAGCA
GTTGTATGTAGTCGGCCGTGCAACAACATGGGGTACATGCAGCTGTGTGC
TTCGGCTTAGCTTCTCACCAGCCACTTCTGCTTTGGTAGTATGTCGATCC
CCTCTTTCGTCTCCTTTCCTGTGGAACCCATGATCATCGCGACATTTGCC
CGCGATCACTGAATGCGTGTCGCGTCTCTCTTGTGGGTGGCCTGGCAGAT
CCGCAACTACGTGCTGGCAATGGAGGGCCTCTTCGGAGCTGCGCACAACA
TGACGTTCCTTTTCGCGCCTCTGTCGGGCGAAACTGCCAAGCAGGTTAGT
TAGGTATTTAGTCGTGCTTGTCCCGCAAGACTCGTTTTGACTTGGACGAG
AAAAGAGTGGGTTGTTTGCTGCTGTCCCATGTTTGTAGATCGATCGCAAC
ACGCCGTGGTCGCCACTTGCTATTCGGTTCGTAGGCTTCAACACAGCGGG
AGAGATTTGTCCCCCCCCCCCCCCCCCCGTTCTTCCGTACGGCACATGCG
GTACTGTCATTCTAGCTTCCATGCGTCTCTTCCCGATCGTAGAGATTGGA
TCCCCAGTTCTGCCCTGACGGCTGCATTGCTTGTGCGCTCGGAGCATAAA
AATCAGATCCTCGGATGCTCCAAGCGCACAAGCAATGCAGCCGTGACGGC
AGAACTGGGGATCCAATCTCTACGATCGGAAAGAGACGCAGGGAAGCTAG
AATGACAGTAACCCATGTGCGGTATGGGAAAGGAGAGATTTCCGACAATA
GCCTGGGGGGCGAAGTGGGCATACAAGAAGAAGGGTAGACAACCCACGGA
GTGAGTTGAGGTTGTAGATGTATGGAAAGAGTTCGAAATTAACGAAGGTA
AAAACGCTGGAAACGGAAGGTGAGGTTCAAGGAGAAGACACATGTTGCTT
GTACCGAGAGAAGAACAGAACGTAACCAAAGAAACCAAGGATCAAGAGGG
TCCAGATGTGTACAGAATGTCGATAGAAAGGAACGGGTTTAAGGAGTCCT
ACATGGACCAATGGATGCAGGGACCAAGCTGAAGGTCGAATTCAGGACGG
GGGGGGCGCCGAGAACTTAGACGAAGATTTTGAAAGGAAGACGAAAAAAG
ATTAAAGTTCAAATGTGATTGCGGCTACGAGTGCGAAGACCGGGTTCATG
TAATTGCGGAATGTCCGTTGTACAAGAAGAGAGGGAAGTGTACATGACTG
AGGTGGGAAAGGTAGAAGGAAGAAACAGGGAGATGTTGGAGGCGTGGATT
GGCGAGGAGAAGGTGGTAACTTTACTGGGGCATAGGAAGTGGGTTGAAAA
GATCGGAAGCGATATCGATAGGGTAGGCTAGGGAAGGCATTTTTGAGCGA
CTTGTGGCAACGTACACTGTGGTAAGGAATGGTTGAACAATAGCTCCATC
CTCTCGAGCATATGTGGTCAATGGTCTAACCGCTAAGGCGTGCAAAACAT
AAGGGTACGCCTCCCCGCCCCCCCGTTCTATGAGGTAGCAATTGCTGTCT
GTTCTTGTGTATGTGCGAGAGTTCCAGACCGGTGGGAGTTCACGCACACA
GCGTAACAATATTCTTAGGTACACCCCCACATGCCTCCGCCCCCCCCCCC
CCCCTCCTCCGCGCTGCATGCAACACAAAACGCACAGTTGAAGCTGTCGT
TGTGCCGTGTAGCGGTACAGGACGCAATGATCCGAGGGCTGACGGAGTAC
TTGGAGGCCCCCCTCAAGGCCGTGCTTGACTTTTGCGACGGCATCGACCT
GCTGGCGAAGCGACGTGTTCAGCTACTGCTCGACTACGACCACCACAAGC
GAAAACACGAAGCGGTGGAGGCGCGTAGTTGTGTGTCTCGAGTCGGGGAA
AAGGAAGAGAGAAGGGGGCACGGAAATGGCGGGCGAAAGAGAGGGGGTGG
ACAGAGGTCGAAGACAGTTGGAAGAAAAGGGGCGAAGCAGGGATCTTTTG
CTTTAGTTACTTTGAAGAAAGGTTCTTCAAATCACAACAATGGCGTTCAT
GTTCTCCTGACGTAGCTCGCTTGTGTGTCGCGTATGCACCTAAAGTTCGC
GGCCAGTTTTCCACTCGCACCTCGCATCCCACCAGTCACGACCGTGGTTT
TGGATAACGTAGGAAGCGGAGATGTAGTGAACTACCCGCTGACGATTGTC
CCCTCTCCGTCTAGCCCCCACCTCCCTTTTTCTCCGTACTTGTTTGGGTG
TTTGGATTTGCAGCAGTAGTGGGGTACGACATGGGCGATGATCACGACGC
CATCGCGCAACAGTCAGATGCTTCTAACTTTAAGGAGAAATATGTACACG
AACAGAAAGACTACCCATTCGTCTAACTTTGTTCCACCTTACCGTTTTTG
CCTTTTTCTCTCTCCGGGTCGCGTTCTCCTGCCCGCCCCCGCTTGCTCGC
CTTCTCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8310:803..3412+

>mRNA_Ecto-sp13_S_contig8310.19663.1 ID=mRNA_Ecto-sp13_S_contig8310.19663.1|Name=mRNA_Ecto-sp13_S_contig8310.19663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8310:803..3412+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGACGGCCTGAAGGACATACAGGCCCAGATCCGCAACTACGTGCT
GGCAATGGAGGGCCTCTTCGGAGCTGCGCACAACATGACGTTCCTTTTCG
CGCCTCTGTCGGGCGAAACTGCCAAGCAGTTGAAGCTGTCGTTGTGCCGT
GTAGCGGTACAGGACGCAATGATCCGAGGGCTGACGGAGTACTTGGAGGC
CCCCCTCAAGGCCGTGCTTGACTTTTGCGACGGCATCGACCTGCTGGCGA
AGCGACGTGTTCAGCTACTGCTCGACTACGACCACCACAAGCGAAAACAC
GAAGCGGTGGAGGCGCGTAGTTGTGTGTCTCGAGTCGGGGAAAAGGAAGA
GAGAAGGGGGCACGGAAATGGCGGGCGAAAGAGAGGGGGTGGACAGAGGT
CGAAGACAGTTGGAAGAAAAGGGGCGAAGCAGGGATCTTTTGCTTTAGTT
ACTTTGAAGAAAGGTTCTTCAAATCACAACAATGGCGTTCATGTTCTCCT
GACGTAG
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