prot_Ecto-sp13_S_contig83.19654.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig83.19654.1
Unique Nameprot_Ecto-sp13_S_contig83.19654.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length151
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83.19654.1 vs. uniprot
Match: D7FR53_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR53_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.520e-56
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 0 
Query:   47 VEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKSDTRRPLACCVSGERGGVDAAPAKSGQASVP 150
            VEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKS  R PLACCVSGERGGVDAAPAKSGQA VP
Sbjct:  170 VEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKSGARHPLACCVSGERGGVDAAPAKSGQALVP 273
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BLAST of mRNA_Ecto-sp13_S_contig83.19654.1 vs. uniprot
Match: A0A835YWP3_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.240e-14
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   47 VEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERE 107
            ++ RY  L   G+I++VY FAV+VLPF+GLL QL+GFH+ML    LTTYDYI++EQ++ERE
Sbjct:  162 IDDRYGSLSSDGYIIIVYVFAVMVLPFVGLLIQLIGFHMMLAREGLTTYDYIIREQKRERE 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83.19654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR53_ECTSI2.520e-5696.15Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YWP3_9STRA3.240e-1459.02Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 37..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 46..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..58
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83contigEcto-sp13_S_contig83:32606..34936 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83.19654.1mRNA_Ecto-sp13_S_contig83.19654.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig83 32261..40771 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig83.19654.1 ID=prot_Ecto-sp13_S_contig83.19654.1|Name=mRNA_Ecto-sp13_S_contig83.19654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MRCPSLCRGRRRCSNSISVSRGFPSPSVYFRSIRHPFLLSCLLCLPVEGR
YARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQ
EQRKERERKERRRILDKDKSDTRRPLACCVSGERGGVDAAPAKSGQASVP
*
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