mRNA_Ecto-sp13_S_contig12359.1964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12359.1964.1
Unique NamemRNA_Ecto-sp13_S_contig12359.1964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: A0A6H5JPJ0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ0_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.740e-82
Identity = 123/135 (91.11%), Postives = 123/135 (91.11%), Query Frame = 2 
Query:    2 MEGVWTGRWDPAKNGGSSGGDATHGRHARSRGNGDCNPRCAVCLEEVSGGEPTVDGGALGREGGGEAVAAADWTADIGSDVGLRAETTESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIPA 406
            MEGVWTGRWDPAKNGGSS GDAT GRHARS GNGD NPRCAVCLE V GGEPTVDGGALGREGGG A AAADWTADIGSD GLRAET ESVHAS SFAYLPCGHRFHTHCIGRWL HSSSCPSCRSQVEEETIPA
Sbjct:   40 MEGVWTGRWDPAKNGGSSRGDATQGRHARSPGNGDGNPRCAVCLEAVGGGEPTVDGGALGREGGGRAAAAADWTADIGSDEGLRAETMESVHASRSFAYLPCGHRFHTHCIGRWLVHSSSCPSCRSQVEEETIPA 174
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: D7G3J8_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3J8_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 5.040e-70
Identity = 117/137 (85.40%), Postives = 119/137 (86.86%), Query Frame = 2 
Query:    2 MEGVWTGRWDPAKNGGSSGGDATHGRHARSRGNGDCNPRCAVCLEEVSGGEPTVDGGALGREGGGEAVAA-ADWTADIGSDVGLRAETTESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIPAA 409
            MEGVWTGRWDPAKN G+SGG AT GRH RSR NGD NPRCAVCLEEV GGEPTVDGGALGREG        ADWTADIGS+ GLRAET ESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIP A
Sbjct:  688 MEGVWTGRWDPAKNDGTSGGGATQGRHVRSRSNGDGNPRCAVCLEEVGGGEPTVDGGALGREGXXXXXXXXADWTADIGSEEGLRAETAESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIPTA 824
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: B0X690_CULQU (Uncharacterized protein n=5 Tax=Culex pipiens complex TaxID=518105 RepID=B0X690_CULQU)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  266 ESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQV 385
            + V  S S  +LPCGH FH HCIGRWL  ++SCP CR++V
Sbjct:  189 DDVALSASRKFLPCGHAFHGHCIGRWLRSNNSCPVCRAEV 228
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: A0A8D8CJW1_CULPI (E3 ubiquitin-protein ligase KCMF1 n=4 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CJW1_CULPI)

HSP 1 Score: 58.5 bits (140), Expect = 2.410e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  266 ESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQV 385
            + V  S S  +LPCGH FH HCIGRWL  ++SCP CR++V
Sbjct:  457 DDVTLSASRKFLPCGHAFHGHCIGRWLRSNNSCPVCRAEV 496
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: UPI0014585F3F (E3 ubiquitin-protein ligase TRAIP-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014585F3F)

HSP 1 Score: 55.1 bits (131), Expect = 3.810e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 2 
Query:  278 ASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETI 400
            AS S +  PCGH FH  C+ +WLA SS+CPSCRS+V    I
Sbjct:   16 ASISISATPCGHTFHEECLFKWLATSSTCPSCRSRVNRSNI 56
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: UPI000B4580C8 (E3 ubiquitin-protein ligase TRAIP-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B4580C8)

HSP 1 Score: 55.1 bits (131), Expect = 3.810e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 2 
Query:  278 ASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETI 400
            AS S +  PCGH FH  C+ +WLA SS+CPSCRS+V    I
Sbjct:   16 ASISISATPCGHTFHEECLFKWLATSSTCPSCRSRVNRSNI 56
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: A0A6I9S765_ELAGV (RING-type E3 ubiquitin transferase n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9S765_ELAGV)

HSP 1 Score: 52.0 bits (123), Expect = 2.650e-5
Identity = 23/46 (50.00%), Postives = 24/46 (52.17%), Query Frame = 2 
Query:  266 ESVHASGSFAYLPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIP 403
            E V   G     PC H FH HCI RWLA  SSCP+CRS       P
Sbjct:  162 EFVEGDGVRVLTPCDHGFHVHCIERWLAARSSCPTCRSSCHVAVGP 207
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: A0A3P8W9G5_CYNSE (RING-type domain-containing protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8W9G5_CYNSE)

HSP 1 Score: 49.3 bits (116), Expect = 2.970e-5
Identity = 16/26 (61.54%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:  299 LPCGHRFHTHCIGRWLAHSSSCPSCR 376
            LPC HRFH HCI RWL+++++CP+C+
Sbjct:   43 LPCSHRFHIHCIDRWLSNNNTCPTCQ 68
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BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: A0A1C7N778_9FUNG (Putative RING finger protein P32A8.03c n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N778_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 3.400e-5
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:  299 LPCGHRFHTHCIGRWLAHSSSCPSCRSQVEEET 397
            LPC H++H+ CI RWL  +SSCP CRS V+E+T
Sbjct:  186 LPCEHKYHSECITRWLHVNSSCPICRSAVDEQT 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Match: I1H503_BRADI (RING-type domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H503_BRADI)

HSP 1 Score: 50.1 bits (118), Expect = 4.760e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  293 AYLPCGHRFHTHCIGRWLAHSSSCPSCRSQV 385
            A LPCGHRFH  C+G+WL    +CP+CR Q+
Sbjct:   72 AELPCGHRFHRGCVGKWLRVHGTCPTCRHQL 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12359.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JPJ0_9PHAE1.740e-8291.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G3J8_ECTSI5.040e-7085.40TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
B0X690_CULQU1.250e-757.50Uncharacterized protein n=5 Tax=Culex pipiens comp... [more]
A0A8D8CJW1_CULPI2.410e-757.50E3 ubiquitin-protein ligase KCMF1 n=4 Tax=Culex pi... [more]
UPI0014585F3F3.810e-656.10E3 ubiquitin-protein ligase TRAIP-like n=1 Tax=Pec... [more]
UPI000B4580C83.810e-656.10E3 ubiquitin-protein ligase TRAIP-like n=1 Tax=Miz... [more]
A0A6I9S765_ELAGV2.650e-550.00RING-type E3 ubiquitin transferase n=1 Tax=Elaeis ... [more]
A0A3P8W9G5_CYNSE2.970e-561.54RING-type domain-containing protein n=1 Tax=Cynogl... [more]
A0A1C7N778_9FUNG3.400e-560.61Putative RING finger protein P32A8.03c n=1 Tax=Cho... [more]
I1H503_BRADI4.760e-558.06RING-type domain-containing protein n=2 Tax=Brachy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12359contigEcto-sp13_S_contig12359:149..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size409
Hectar predicted targeting categoryother localisation
Exons2
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.7048473-UTR-Ecto-sp13_S_contig12359:148..1491681462657.7048473-UTR-Ecto-sp13_S_contig12359:148..149Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12359 149..149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.7153554-CDS-Ecto-sp13_S_contig12359:149..4781681462657.7153554-CDS-Ecto-sp13_S_contig12359:149..478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12359 150..478 +
1681462657.7231638-CDS-Ecto-sp13_S_contig12359:1128..12071681462657.7231638-CDS-Ecto-sp13_S_contig12359:1128..1207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12359 1129..1207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12359.1964.1prot_Ecto-sp13_S_contig12359.1964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12359 150..1207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12359.1964.1

>prot_Ecto-sp13_S_contig12359.1964.1 ID=prot_Ecto-sp13_S_contig12359.1964.1|Name=mRNA_Ecto-sp13_S_contig12359.1964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MEGVWTGRWDPAKNGGSSGGDATHGRHARSRGNGDCNPRCAVCLEEVSGG
EPTVDGGALGREGGGEAVAAADWTADIGSDVGLRAETTESVHASGSFAYL
PCGHRFHTHCIGRWLAHSSSCPSCRSQVEEETIPAA
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mRNA from alignment at Ecto-sp13_S_contig12359:149..1207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12359.1964.1 ID=mRNA_Ecto-sp13_S_contig12359.1964.1|Name=mRNA_Ecto-sp13_S_contig12359.1964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12359:149..1207+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGGAAGGCGTTTGGACCGGTCGTTGGGATCCCGCCAAAAATGGCGGCT
CCAGCGGCGGCGACGCCACGCACGGGCGGCACGCCCGGAGCCGCGGCAAC
GGCGACTGTAACCCGCGCTGCGCCGTGTGCCTCGAGGAGGTCAGCGGGGG
GGAGCCGACCGTCGATGGTGGTGCTCTCGGGCGGGAGGGGGGCGGGGAGG
CGGTGGCTGCTGCTGATTGGACGGCGGACATCGGGTCGGACGTGGGTCTC
CGCGCCGAGACGACGGAGAGTGTCCACGCGAGCGGGAGCTTTGCGTACCT
CCCCTGCGGGCACCGTTTCCACACGCACTGGTGAGGAGAGGTGTTTGCTT
GTTGGATAGGAACGCTCTCGGTGGGCGCGGCGCTTTTGATGAGCACCGTT
TGATGGGGTTTGCGTCACATCAAAGTGTCCTGCTCTATTGTTGGGCAGAA
TGCTTGCTTGGAAATGTGTGTTTGTTTGGTGGAGTCGCGTGTCGGAGATA
CAACAGAGGATAACCTCTGGTGACGAGCTGACACGCGGGAGGAGGCAGCC
TGCTAGGTGTCAACCTAGCCGCCTCGACCTCCTTCTCGAGCATGGTTGAC
TGTTTAACTCTCTCCCTCTGTGTGTCTCCTGTCTGTCTGTCCATCTGTGT
TTTACGCTGTCTACCTGACTGTCTGTCTTTCTCGTTCCGTCTTTGTACGA
TGATGATATGTACAACATACTTTTTCCCTCCCTTCCCTGGCATGCCATGG
TCCTGTGGTAAAATTGTTCCGTCTTCTCGAGGACGGGTGGTCAATGGCCT
AAACGCTAAGGCGTGCAAAACAAAAGAGTGCGCCCCTCCCCCCGGGCGAG
TCATCGGCTTTCCATCGCAAACCGAGTTGGCCGACGAAGTTTACACCGTC
GCCCCTCGATGAACTTGTCTTGCCCGCCCCATCAATTTTTTTTTTTTCCT
CCCTTCTGCTCATGGAACGTGCATGCACAGCATCGGGCGCTGGCTGGCGC
ACAGCTCGTCCTGCCCGTCTTGCCGCAGCCAAGTGGAAGAGGAAACCATC
CCAGCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12359:149..1207+

>mRNA_Ecto-sp13_S_contig12359.1964.1 ID=mRNA_Ecto-sp13_S_contig12359.1964.1|Name=mRNA_Ecto-sp13_S_contig12359.1964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12359:149..1207+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGCGTTTGGACCGGTCGTTGGGATCCCGCCAAAAATGGCGGCTC
CAGCGGCGGCGACGCCACGCACGGGCGGCACGCCCGGAGCCGCGGCAACG
GCGACTGTAACCCGCGCTGCGCCGTGTGCCTCGAGGAGGTCAGCGGGGGG
GAGCCGACCGTCGATGGTGGTGCTCTCGGGCGGGAGGGGGGCGGGGAGGC
GGTGGCTGCTGCTGATTGGACGGCGGACATCGGGTCGGACGTGGGTCTCC
GCGCCGAGACGACGGAGAGTGTCCACGCGAGCGGGAGCTTTGCGTACCTC
CCCTGCGGGCACCGTTTCCACACGCACTGCATCGGGCGCTGGCTGGCGCA
CAGCTCGTCCTGCCCGTCTTGCCGCAGCCAAGTGGAAGAGGAAACCATCC
CAGCCGCC
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