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Homology
BLAST of mRNA_Ecto-sp13_S_contig83.19650.1 vs. uniprot
Match: D7FR57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR57_ECTSI) HSP 1 Score: 713 bits (1840), Expect = 7.450e-252 Identity = 394/418 (94.26%), Postives = 399/418 (95.45%), Query Frame = 1
Query: 334 AGGEDLFELLDERVPPALVIXXXXXXXXXXXXXPSTPAIQSREPPGYTAPVFFPFGKPEPTAPQLKLSGVSSFKKINSRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGAFPAAAEDEERQDSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVNKKWAPSYDHSKNVKKRASGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEPVDKKNDGISDVADRQVWLEDLDCLSPTSGKQPPSQDTTHEAEDHLGRNPVTSPRSSEPAAKATFDTGVRGDRVEDDAEVLRQRLVRALVVRSVEEGVHTSDVRPKPDVTAARRKPASAGALDLLDVTQLNLAQRVLVQLHGVGLIKNLGQATSGNHVSGSRKLIRTNAS 1587
AGGEDLFELLDERVPPALVIXXXXXXXXXXXX PSTPAI+SREPPGYTAPVFFPFGKPEPTA QLKLSGVSSFKKINSRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGA PAAA DEERQDSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVN+KWAPS+DHSKNVKKR+SGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEPVDKKNDGISDVAD QVWLED D +SPTSGKQPPSQDTTHEAED LGRN V S RSSEPAAKATFDTGVRGDR EDDAEVLRQRLVRALVV SVEE VHTSD R KPDVTAARRKPASAGALDLLDVTQLN AQRVLVQLHGVGLIK LGQATSGNHVSGSRKLIR NAS
Sbjct: 144 AGGEDLFELLDERVPPALVIXXXXXXXXXXXXAPSTPAIESREPPGYTAPVFFPFGKPEPTASQLKLSGVSSFKKINSRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGAIPAAAGDEERQDSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVNQKWAPSHDHSKNVKKRSSGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEPVDKKNDGISDVADGQVWLEDSDYVSPTSGKQPPSQDTTHEAEDRLGRNAVISLRSSEPAAKATFDTGVRGDRGEDDAEVLRQRLVRALVVPSVEESVHTSDARSKPDVTAARRKPASAGALDLLDVTQLNFAQRVLVQLHGVGLIKILGQATSGNHVSGSRKLIRANAS 561
BLAST of mRNA_Ecto-sp13_S_contig83.19650.1 vs. uniprot
Match: A0A6H5JHX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX8_9PHAE) HSP 1 Score: 609 bits (1570), Expect = 3.150e-214 Identity = 325/346 (93.93%), Postives = 330/346 (95.38%), Query Frame = 1
Query: 550 FKKINSRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGAFPAAAEDEERQDSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVNKKWAPSYDHSKNVKKRASGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEPVDKKNDGISDVADRQVWLEDLDCLSPTSGKQPPSQDTTHEAEDHLGRNPVTSPRSSEPAAKATFDTGVRGDRVEDDAEVLRQRLVRALVVRSVEEGVHTSDVRPKPDVTAARRKPASAGALDLLDVTQLNLAQRVLVQLHGVGLIKNLGQATSGNHVSGSRKLIRTNAS 1587
+ +SRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGA PAAA DEER+DSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVN+KWAPSYDHSKNVKKR+SGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDE VDKKNDGIS VADRQVWLEDLD SPTSGKQPPSQDTTHEAED LGRNPVTS RSSEPAAKATFDTGVRGDRVEDDAEVLRQRLVRALVV SVEE VHTSDVR KPDVTAARRKPASAGALDLLDVTQLNLAQRVLVQLHGVGLIKNLGQATSGNHVSGSRKLI NAS
Sbjct: 4 YFSTHSRLLQGGALSDREEADAIRELERALGVLGHQKRFLREHKAGLEKWASAVYGLNLSSGAFAAVGAIPAAAGDEEREDSRGPMGAGRARLREVRVSVKCKGAKRRAEKQLVAHVNQKWAPSYDHSKNVKKRSSGRPEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEQVDKKNDGISAVADRQVWLEDLDNFSPTSGKQPPSQDTTHEAEDCLGRNPVTSLRSSEPAAKATFDTGVRGDRVEDDAEVLRQRLVRALVVPSVEESVHTSDVRRKPDVTAARRKPASAGALDLLDVTQLNLAQRVLVQLHGVGLIKNLGQATSGNHVSGSRKLIHANAS 349
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1869 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_003420.1 |
| Cds size | 1527 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464099.6839552-UTR-Ecto-sp13_S_contig83:2927..3206 | 1681464099.6839552-UTR-Ecto-sp13_S_contig83:2927..3206 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig83 2928..3206 - |
| 1681464099.7561986-UTR-Ecto-sp13_S_contig83:6803..6866 | 1681464099.7561986-UTR-Ecto-sp13_S_contig83:6803..6866 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig83 6804..6866 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464099.6939955-CDS-Ecto-sp13_S_contig83:3206..3266 | 1681464099.6939955-CDS-Ecto-sp13_S_contig83:3206..3266 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 3207..3266 - |
| 1681464099.70516-CDS-Ecto-sp13_S_contig83:3556..3807 | 1681464099.70516-CDS-Ecto-sp13_S_contig83:3556..3807 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 3557..3807 - |
| 1681464099.7174592-CDS-Ecto-sp13_S_contig83:3932..4581 | 1681464099.7174592-CDS-Ecto-sp13_S_contig83:3932..4581 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 3933..4581 - |
| 1681464099.7276573-CDS-Ecto-sp13_S_contig83:4753..4817 | 1681464099.7276573-CDS-Ecto-sp13_S_contig83:4753..4817 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 4754..4817 - |
| 1681464099.7368796-CDS-Ecto-sp13_S_contig83:5133..5362 | 1681464099.7368796-CDS-Ecto-sp13_S_contig83:5133..5362 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 5134..5362 - |
| 1681464099.745714-CDS-Ecto-sp13_S_contig83:6529..6803 | 1681464099.745714-CDS-Ecto-sp13_S_contig83:6529..6803 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig83 6530..6803 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig83.19650.1 >prot_Ecto-sp13_S_contig83.19650.1 ID=prot_Ecto-sp13_S_contig83.19650.1|Name=mRNA_Ecto-sp13_S_contig83.19650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
MQFAIDIPPSPCSLIIDASSTFTTFFRPALMPCLNLHIYRLFMSPAAQTL PPRCLDHKRKYALSAPKSTDALLRYALSFPASHVDGGEPLAGGEDLFELL DERVPPALVIPPAPVIATAPVVAPSTPAIQSREPPGYTAPVFFPFGKPEP TAPQLKLSGVSSFKKINSRLLQGGALSDREEADAIRELERALGVLGHQKR FLREHKAGLEKWASAVYGLNLSSGAFAAVGAFPAAAEDEERQDSRGPMGA GRARLREVRVSVKCKGAKRRAEKQLVAHVNKKWAPSYDHSKNVKKRASGR PEVDKPTKRSKPPAPKADLAVVVGTSSITSVSEGVIDEPVDKKNDGISDV ADRQVWLEDLDCLSPTSGKQPPSQDTTHEAEDHLGRNPVTSPRSSEPAAK ATFDTGVRGDRVEDDAEVLRQRLVRALVVRSVEEGVHTSDVRPKPDVTAA RRKPASAGALDLLDVTQLNLAQRVLVQLHGVGLIKNLGQATSGNHVSGSR KLIRTNAS* back to topmRNA from alignment at Ecto-sp13_S_contig83:2928..6866- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig83.19650.1 ID=mRNA_Ecto-sp13_S_contig83.19650.1|Name=mRNA_Ecto-sp13_S_contig83.19650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83:2928..6866- (Ectocarpus species13 EcNAP12_S_4_19m) AGGCAGAGTTCCTCAAACGGCAGTGAACCTAGGTCTCTGAACGCCACGCC
TCTGGAAGCCACGATGCAGTTCGCGATCGATATACCGCCGTCGCCGTGTT
CCTTGATCATTGACGCGTCATCAACCTTCACTACGTTTTTTAGGCCTGCG
CTAATGCCTTGCCTGAACTTACACATCTACCGCTTGTTCATGTCCCCTGC
TGCCCAAACCCTTCCTCCCCGATGCCTTGACCACAAGAGAAAGTATGCAT
TGTCCGCCCCCAAGAGCACTGATGCACTATTGCGATACGCACTTTCGTTC
CCCGCGAGTCATGTGGACGGAGGCGAGCCGCTAGCAGGCGAGCGGTCTAC
CGAATGTTTGTTTTGAGAACACCCCACTCCAATAATTACCGCTGGAGCAA
TCGTTTGTATGCCAATGATTTCTGTTTGTTCGACCCCTTCCTGTGAGGTA
GTCCTTTTTTTCGGCAACCCATTGGGCGTTCACAGGATAGTCGTTGGCAC
TCATGCCGTCGACGTTGACTTGTCGCCCCGGGCTGATGTTTTTTGTTTGC
CTTTTTTAGCCTCCCGACCGCTGAGAACTGAGAATGCCCCGGAGTTTATA
CCCATATATGTGTTTATGCCTCGGGGGATGATCTCAAAGGATGTTGCCGC
CTTCACATTGTGCCCATGCACAAGAAGCAGATCCCTGCGCCTCCCTACGG
TTTATGTTGTCCAGCAGCAATTATCACCAGAGCGGGGGGACTACAGCACA
CAAATCATTCCTCGTCTTTTTATAAACAGTCCCGCGGATTCGTAGCTCCT
AGGAAAATGCACCCTTCACAAGGGTGTACCAGAGGCATGAATGTACGTAC
ACGTACTAGCGGCGAGGGCTGAGCGCGCAGTACATACACTACATGGCCCT
TGCTTCGACAGTGACAAAGAAGCGAACAAGCAGACCGAGCCAAACACCAA
GTACGACCGATACACCCCAGACAAAAATATGAACGCCGTTTGTTTTCAGG
CTAAACGTCTTGGAGGCACTATTTTGGGGGCACGTGACCAGAACTTGGAC
GTTAGGTGCCGGCGGCGCCAGCCTGTGGCAACGTGTTTGTCGCTGGGAAT
GTTGAGTGTCTGCCTAGATGTGTTGTGACAGTTGGGAGGGGTAATGCGAC
GCTTGGCAGAAGGAAATCATTCTAAGAGAATGAATTGTGTGGAAACGCCC
GTGTGCTTGTGGTGCAGGCACCAAAAACGATGGCAAACTCACACCGCCTG
CTGTTCGTGTGGTCATTCTACGTCACGGCACGGACACGCGTGGCCACGGA
AATACGGCGGCACTATCGCTCTCTCACAGAGGTCCCGGGTGCTCTCCCTC
ACAACAGTGATGACTCTGGGCTGGTGGAACAAAGAGCGTGTTCATTGCTT
GATCGATGTGTCTCCCACCCTGGACGCACATCATGCATTGCACCTGGCAT
AACTTGGTTTATCTAGCTCATCGCGTGTGGATGACGCGTGTCTCTGAATA
TCAGGGGGAGAAGATTTGTTCGAGCTTCTGGACGAACGCGTCCCTCCAGC
CCTCGTCATTCCTCCCGCCCCCGTGATCGCTACTGCTCCTGTGGTGGCTC
CTTCGACCCCTGCGATCCAGAGTCGGGAACCGCCTGGCTATACCGCACCC
GTGTTCTTCCCGTTTGGCAAGCCAGAGCCAACTGCACCTCAGCTCAAACT
CTCTGGCGTTTCGTCCTTCAAGAAGATCAATAGGTCTGGGCGGATTACAA
TAACGATCATTTTTCTCTCCGCGAATGAAGAATCGGAGGCTGACACTGTT
TCCAATTTGTAGGCTTCATTCTCTCGCGTGGATGATGACGCCGACCTATC
GCCATAGGGAAGGTGTTGTGTCCCTTATCCTCACCATCCAGAGCTCGGTC
TGGTTCATCTTAAACGTACCGTTTGCACTTTTGGACCCTTCCTGCTTGAT
GAGTCTGTTGTTCCCCCCAAACGAACAAAAGCACTCGCACGCTTCTACTT
TGCCTAATTGTTGTCTTTCCTTAATGCCGCTGTCTTTCTCCACACATAGT
CGGCTACTGCAGGGGGGCGCGCTGAGTGATAGGGAAGAGGCAGATGCTAT
CCGCGAGTTGGAGGTGAGACGCGAGAGAAAAATCTGAAGGGCTGCCGCTC
ATTTGGCTTCGCCCAATTTTTTTTTTTCCGAGGGGAAGGAATACCGTTCC
TGATGATGAATGCAGAAGGCAATGCTGCCCACGTATGCATAGGGCATGTT
TAACTGGAGGTTCCCTTCGTTTCGCACCATCGTAGCGGGCTCTAGGTGTA
TTGGGACACCAGAAACGTTTTCTCAGAGAGCACAAGGCCGGATTGGAGAA
ATGGGCCTCTGCCGTGTACGGGTTAAACCTCTCGTCAGGAGCCTTCGCTG
CGGTGGGGGCTTTTCCAGCGGCCGCGGAAGACGAAGAAAGACAAGATTCG
CGAGGACCTATGGGGGCGGGGAGAGCTCGACTGCGTGAAGTTCGCGTCAG
CGTAAAGTGCAAGGGGGCCAAGCGACGGGCGGAAAAACAGCTCGTTGCGC
ACGTAAACAAAAAGTGGGCACCGAGCTATGATCACTCCAAGAATGTGAAA
AAACGGGCATCCGGCAGACCAGAGGTCGACAAGCCAACCAAACGAAGCAA
ACCCCCCGCCCCGAAAGCAGACCTAGCCGTCGTCGTGGGGACAAGCTCAA
TAACCAGTGTTTCGGAGGGAGTTATTGACGAACCGGTGGACAAGAAGAAC
GATGGAATATCCGACGTGGCCGACAGGCAGGTTTGGTTGGAAGATTTGGA
CTGCTTATCCCCTACCTCCGGGAAACAGCCGCCATCACAAGATACAACCC
ATGAAGCAGAGGACCACCTTGGACGAAATCCGGTCACTTCGCCGCGCTCG
TCGGAGCCAGCAGCAAAGGCAACGTTTGATACCGGTACGGCGAGAGAGGG
TTATTGAGGTGTTCTGGTCGCTTGCCTGAAATTTTTGGGATGTATCCCTG
ATCTTAACTAATTGATGAGCCGAACGCGTCCTTTGCGAATTTTACGTCTT
ATGTTGCAGGCGTTCGAGGCGACCGAGTCGAGGATGACGCAGAAGTTCTG
AGACAGCGCCTGGTACGCGCACTTGTTGTCCGTAGTGTTGAGGAAGGCGT
TCATACAAGCGACGTGCGACCCAAACCAGATGTTACAGCTGCTCGGAGAA
AGCCAGCAAGCGCGGGTGCGCTCGATCTCCTAGATGTGACGCAGTTGAAT
CTTGCGCAGCGGGTTCTCGTACAGCTCCATGGTGTGGGTCTCATCAAAAA
CCTTGGTCAGGTGAGTATGTGGTAGGCGCTCTAACATGCTGCCAGAAGCA
TTCAACACGCACTTCAAGGCTGAGCGTAGTTGCGTTCACCCTGGTTTTGG
TCGTCAAGGAGAGTAATCTTTCCCAGAGGCAGGTGTTGCGTGACAATCCT
AAGGCATTCGCTCTGCACACCCGTCGGTTGAGTGACCAAAGCGGCAAAAG
CCTCAGAGGAGGCTTGTGTTGGCAGCCGTTCGGGACACATCCTTTGCGAA
ATGTCAGGATTGAATTTGTCACCCTATTTTTTGTTGTGCTGGTTTTGCAG
GCCACGTCTGGAAACCACGTATCTGGGTCTCGAAAGCTAATACGCACGAA
TGCCTCTTAGTCCTCGGGGGGCTCCTCCGGCTTTTTCTGGGCTTCGAGCA
ACGTGCTTCTGACAATCGGTTTGTCATGTGGATGAGACAAAACTTACTAC
AGATGTCACACCAGTGTACGTTCGTTCACAACCGCTTGAAAACAACGACA
GCAGTGAGCAAGTGACTGAGAGTGCTTGGGCAACGGGGCTCACGACATCG
TGGTTTCCTTGTCTCTTCGTGCAGAGGTAGAGCGTGCAAGCATGCTCTGT
TGATGTCATCAGTTTTCAGCCGGTGGCTCGCTGTTTTTT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig83:2928..6866- >mRNA_Ecto-sp13_S_contig83.19650.1 ID=mRNA_Ecto-sp13_S_contig83.19650.1|Name=mRNA_Ecto-sp13_S_contig83.19650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83:2928..6866- (Ectocarpus species13 EcNAP12_S_4_19m) ATGCAGTTCGCGATCGATATACCGCCGTCGCCGTGTTCCTTGATCATTGA CGCGTCATCAACCTTCACTACGTTTTTTAGGCCTGCGCTAATGCCTTGCC TGAACTTACACATCTACCGCTTGTTCATGTCCCCTGCTGCCCAAACCCTT CCTCCCCGATGCCTTGACCACAAGAGAAAGTATGCATTGTCCGCCCCCAA GAGCACTGATGCACTATTGCGATACGCACTTTCGTTCCCCGCGAGTCATG TGGACGGAGGCGAGCCGCTAGCAGGGGGAGAAGATTTGTTCGAGCTTCTG GACGAACGCGTCCCTCCAGCCCTCGTCATTCCTCCCGCCCCCGTGATCGC TACTGCTCCTGTGGTGGCTCCTTCGACCCCTGCGATCCAGAGTCGGGAAC CGCCTGGCTATACCGCACCCGTGTTCTTCCCGTTTGGCAAGCCAGAGCCA ACTGCACCTCAGCTCAAACTCTCTGGCGTTTCGTCCTTCAAGAAGATCAA TAGTCGGCTACTGCAGGGGGGCGCGCTGAGTGATAGGGAAGAGGCAGATG CTATCCGCGAGTTGGAGCGGGCTCTAGGTGTATTGGGACACCAGAAACGT TTTCTCAGAGAGCACAAGGCCGGATTGGAGAAATGGGCCTCTGCCGTGTA CGGGTTAAACCTCTCGTCAGGAGCCTTCGCTGCGGTGGGGGCTTTTCCAG CGGCCGCGGAAGACGAAGAAAGACAAGATTCGCGAGGACCTATGGGGGCG GGGAGAGCTCGACTGCGTGAAGTTCGCGTCAGCGTAAAGTGCAAGGGGGC CAAGCGACGGGCGGAAAAACAGCTCGTTGCGCACGTAAACAAAAAGTGGG CACCGAGCTATGATCACTCCAAGAATGTGAAAAAACGGGCATCCGGCAGA CCAGAGGTCGACAAGCCAACCAAACGAAGCAAACCCCCCGCCCCGAAAGC AGACCTAGCCGTCGTCGTGGGGACAAGCTCAATAACCAGTGTTTCGGAGG GAGTTATTGACGAACCGGTGGACAAGAAGAACGATGGAATATCCGACGTG GCCGACAGGCAGGTTTGGTTGGAAGATTTGGACTGCTTATCCCCTACCTC CGGGAAACAGCCGCCATCACAAGATACAACCCATGAAGCAGAGGACCACC TTGGACGAAATCCGGTCACTTCGCCGCGCTCGTCGGAGCCAGCAGCAAAG GCAACGTTTGATACCGGCGTTCGAGGCGACCGAGTCGAGGATGACGCAGA AGTTCTGAGACAGCGCCTGGTACGCGCACTTGTTGTCCGTAGTGTTGAGG AAGGCGTTCATACAAGCGACGTGCGACCCAAACCAGATGTTACAGCTGCT CGGAGAAAGCCAGCAAGCGCGGGTGCGCTCGATCTCCTAGATGTGACGCA GTTGAATCTTGCGCAGCGGGTTCTCGTACAGCTCCATGGTGTGGGTCTCA TCAAAAACCTTGGTCAGGCCACGTCTGGAAACCACGTATCTGGGTCTCGA AAGCTAATACGCACGAATGCCTCTTAG back to top
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