mRNA_Ecto-sp13_S_contig82974.19646.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82974.19646.1
Unique NamemRNA_Ecto-sp13_S_contig82974.19646.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82974.19646.1 vs. uniprot
Match: D8LH68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH68_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 GSASLSMLVRSLISPISSNRAVFEHI 80
            GSASLSML+RSLISPISSNRAVFEHI
Sbjct:  310 GSASLSMLIRSLISPISSNRAVFEHI 335
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82974.19646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH68_ECTSI2.180e-596.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82974contigEcto-sp13_S_contig82974:34..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.3823376-CDS-Ecto-sp13_S_contig82974:33..1131681464099.3823376-CDS-Ecto-sp13_S_contig82974:33..113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82974 34..113 +
1681464099.3944561-CDS-Ecto-sp13_S_contig82974:272..3541681464099.3944561-CDS-Ecto-sp13_S_contig82974:272..354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82974 273..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82974.19646.1prot_Ecto-sp13_S_contig82974.19646.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82974 34..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82974.19646.1

>prot_Ecto-sp13_S_contig82974.19646.1 ID=prot_Ecto-sp13_S_contig82974.19646.1|Name=mRNA_Ecto-sp13_S_contig82974.19646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
RVRRLFQCLSGASSRQYPPIEQFSSTSWGKSQKTGDFPSTRSFKVRYVRT
LLL*
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mRNA from alignment at Ecto-sp13_S_contig82974:34..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82974.19646.1 ID=mRNA_Ecto-sp13_S_contig82974.19646.1|Name=mRNA_Ecto-sp13_S_contig82974.19646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82974:34..354+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGTTCGGCGTCTCTTTCAATGCTTGTCCGGAGCCTCATCTCGCCAATA
TCCTCCAATCGAGCAGTTTTCGAGCACATCGTAAGTTTTTTGCCGACCTG
TACTGTGTAGGCCGCTTTCGTAACAGACATGCACTTGACTTTGTCTGATT
GTCGCCGGGGGAGACCCCAGCTTGTAGCAAAGGTGTGTGACGGTGCTTGA
ATTTGAAACGCTGTTGAACTGCTCGCGTGCATGCCGCAGTTGGGGAAAGT
CGCAGAAGACGGGAGATTTTCCATCCACAAGATCTTTTAAAGTCAGGTAT
GTTCGCACGTTGTTGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82974:34..354+

>mRNA_Ecto-sp13_S_contig82974.19646.1 ID=mRNA_Ecto-sp13_S_contig82974.19646.1|Name=mRNA_Ecto-sp13_S_contig82974.19646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82974:34..354+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGTTCGGCGTCTCTTTCAATGCTTGTCCGGAGCCTCATCTCGCCAATA
TCCTCCAATCGAGCAGTTTTCGAGCACATCTTGGGGAAAGTCGCAGAAGA
CGGGAGATTTTCCATCCACAAGATCTTTTAAAGTCAGGTATGTTCGCACG
TTGTTGTTGTGA
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