mRNA_Ecto-sp13_S_contig82959.19645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82959.19645.1
Unique NamemRNA_Ecto-sp13_S_contig82959.19645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.310e-31
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMSSYDKEGKVVLGDPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPE 276
            +DAFK T G+ +S ++++G+ V G PL+WWRVKAREYP LA+LARRVLCIPA QA SERVFS+AG VVT TR+R+DPE+V LMVFLR+  PE
Sbjct:  456 VDAFKITPGLAVS-WEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPPE 546
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.550e-22
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 LDAFKTTRGV---DMSSYDKEGKVVLGDPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSV 267
            + AFK   G+   DM   +   K V  +PL  WR K  EYP+LAALARRVL IP+SQA SERVFS AG  VTPTRSRL  E+VEL+V+LR+V
Sbjct:  455 VSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNV 546
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-19
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   19 TRGVDMS--SYDKEGKVVLG-DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            +RG++M   SY     V L   PL+WW+V A  YP+LA+LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:    1 SRGIEMEILSYRSGIPVPLNRSPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A1A8MVX1_9TELE (BED-type domain-containing protein n=3 Tax=Atherinomorphae TaxID=1489913 RepID=A0A1A8MVX1_9TELE)

HSP 1 Score: 85.5 bits (210), Expect = 1.920e-17
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMS--SYDKEGKVVLG-DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            ++  +T+RG++M   SY     + L   PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:  560 VETVQTSRGIEMEILSYRSGIPIPLNRSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 649
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: UPI001C03CB56 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03CB56)

HSP 1 Score: 84.0 bits (206), Expect = 2.500e-17
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMS--SYDKEGKVVLGD-PLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            ++A +++RG++M   SY     + L   PL+WW+V A  YP+LA  A+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:  223 VEAVQSSRGIEMEILSYRNGIPIPLNSSPLEWWKVNAYAYPILAPFAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 312
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A8C1LHH7_CYPCA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1LHH7_CYPCA)

HSP 1 Score: 84.3 bits (207), Expect = 4.530e-17
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMS--SYDKEGKVVLGD-PLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRS 264
            ++  +++RG++M   SY     + L   PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL++
Sbjct:  395 VETVQSSRGIEMEILSYRNGIPIPLNSSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLKN 485
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: UPI001C055523 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C055523)

HSP 1 Score: 84.0 bits (206), Expect = 6.680e-17
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMS--SYDKEGKVVLGD-PLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            ++A +++RG++M   SY     + L   PL+WW+V A  YP+LA  A+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:  558 VEAVQSSRGIEMEILSYRNGIPIPLNSSPLEWWKVNAYTYPILAPFAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 647
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A8C5BMU0_GADMO (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BMU0_GADMO)

HSP 1 Score: 83.2 bits (204), Expect = 8.910e-17
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMSSYDKEGKVVL---GDPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            L+  +++RG++M        + +     PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V   RS + PEHV+++VFL+
Sbjct:  303 LEPVQSSRGIEMEIVAYRNGIPIPLNSSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVCAQRSLITPEHVDMLVFLK 392
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: A0A8C5C595_GADMO (BED-type domain-containing protein n=10 Tax=Clupeocephala TaxID=186625 RepID=A0A8C5C595_GADMO)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-16
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMSSYDKEGKVVL---GDPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLR 261
            L+  +++RG++M        + +     PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V   RS + PEHV+++VFL+
Sbjct:  587 LEPVQSSRGIEMEIVAYRNGIPIPLNSSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVCAQRSLITPEHVDMLVFLK 676
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BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Match: UPI00077D4413 (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D4413)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDAFKTTRGVDMS--SYDKEGKVVLG-DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVF 255
            ++  +T+RG++M   SY     + L    L+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VF
Sbjct:  115 VETVQTSRGIEMEILSYRSGMGIPLNRSALEWWKVNAYAYPILAPLAKSYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVF 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82959.19645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE8.310e-3167.39Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI4.550e-2258.70Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1A8CIX7_9TELE5.160e-1950.00Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A8MVX1_9TELE1.920e-1746.67BED-type domain-containing protein n=3 Tax=Atherin... [more]
UPI001C03CB562.500e-1745.56E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanota... [more]
A0A8C1LHH7_CYPCA4.530e-1745.05Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cy... [more]
UPI001C0555236.680e-1745.56E3 SUMO-protein ligase ZBED1-like n=1 Tax=Melanota... [more]
A0A8C5BMU0_GADMO8.910e-1743.33Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ga... [more]
A0A8C5C595_GADMO1.250e-1643.33BED-type domain-containing protein n=10 Tax=Clupeo... [more]
UPI00077D44131.300e-1645.45zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82959contigEcto-sp13_S_contig82959:309..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.2
Seed ortholog evalue6.6e-20
Seed eggNOG ortholog2880.D7G5Z0
Model size276
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size276
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.351163-CDS-Ecto-sp13_S_contig82959:308..5841681464099.351163-CDS-Ecto-sp13_S_contig82959:308..584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82959 309..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82959.19645.1prot_Ecto-sp13_S_contig82959.19645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82959 309..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82959.19645.1

>prot_Ecto-sp13_S_contig82959.19645.1 ID=prot_Ecto-sp13_S_contig82959.19645.1|Name=mRNA_Ecto-sp13_S_contig82959.19645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
LDAFKTTRGVDMSSYDKEGKVVLGDPLQWWRVKAREYPMLAALARRVLCI
PASQAHSERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPE
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mRNA from alignment at Ecto-sp13_S_contig82959:309..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82959.19645.1 ID=mRNA_Ecto-sp13_S_contig82959.19645.1|Name=mRNA_Ecto-sp13_S_contig82959.19645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82959:309..584+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGACGCTTTCAAGACAACACGTGGGGTAGACATGTCGAGCTATGACAA
GGAGGGCAAGGTTGTTCTAGGGGACCCACTGCAGTGGTGGCGTGTTAAGG
CGCGGGAATACCCCATGCTGGCCGCACTGGCACGCCGGGTGTTGTGCATT
CCCGCGTCCCAAGCGCACTCCGAACGTGTGTTTTCGGCGGCGGGACAAGT
CGTAACCCCGACACGTTCTCGGCTCGACCCCGAACACGTAGAGCTCATGG
TATTTCTTCGCTCTGTCCTGCCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82959:309..584+

>mRNA_Ecto-sp13_S_contig82959.19645.1 ID=mRNA_Ecto-sp13_S_contig82959.19645.1|Name=mRNA_Ecto-sp13_S_contig82959.19645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82959:309..584+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGACGCTTTCAAGACAACACGTGGGGTAGACATGTCGAGCTATGACAA
GGAGGGCAAGGTTGTTCTAGGGGACCCACTGCAGTGGTGGCGTGTTAAGG
CGCGGGAATACCCCATGCTGGCCGCACTGGCACGCCGGGTGTTGTGCATT
CCCGCGTCCCAAGCGCACTCCGAACGTGTGTTTTCGGCGGCGGGACAAGT
CGTAACCCCGACACGTTCTCGGCTCGACCCCGAACACGTAGAGCTCATGG
TATTTCTTCGCTCTGTCCTGCCCGAG
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