mRNA_Ecto-sp13_S_contig8294.19643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8294.19643.1
Unique NamemRNA_Ecto-sp13_S_contig8294.19643.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8294.19643.1 vs. uniprot
Match: D7FSQ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ6_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.100e-65
Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:  298 QMVILETKNMGFIDGTLPVFDYSYWFPRGDDGDDDGSGDSDEDVPTRFEFHMPRPEDYIQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEVETDEEVVEEFTSAGGPDTMETFTLSAPA 651
            +MVILETK MGFI+GTLPVFDYSYWFPRGD GDDD SGDSDEDVPTRFEFHMPRPEDY QFRVPPSTVTAVKLRFPSDRQFVFRVSYDE+ETDEE+VEEFTSAGGPDTMETFTLSAPA
Sbjct:  493 EMVILETKEMGFINGTLPVFDYSYWFPRGDGGDDDSSGDSDEDVPTRFEFHMPRPEDYFQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEIETDEEIVEEFTSAGGPDTMETFTLSAPA 610
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BLAST of mRNA_Ecto-sp13_S_contig8294.19643.1 vs. uniprot
Match: A0A6H5JDS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.250e-25
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:  298 QMVILETKNMGFIDGTLPVFDYSYWFPRGDDGDDDGSGDSDEDVPTRFEFHMPRPEDYIQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEVETDEEVVEEFTSAGGPDTMETFTLSAPA 651
            ++V LE +   FI+GT+PVF         DD ++DG+   D D+PTRFEF +    +YI   VPPSTVTA+++RFP+DR FVF V YD +      VEEFTSAGGP T ETFTLS PA
Sbjct:  504 ELVFLEKRKKDFIEGTIPVFSTRIRSTSNDDEEEDGA---DVDIPTRFEFDLQIEGNYIDMNVPPSTVTALRMRFPADRSFVFMVEYDGI------VEEFTSAGGPKTWETFTLSTPA 612
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BLAST of mRNA_Ecto-sp13_S_contig8294.19643.1 vs. uniprot
Match: D8LG22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG22_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 9.520e-21
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:  370 WFPRGDDGDDDGSGDSDEDVPTRFEFHMPRPEDYIQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEVETDEEVVEEFTSAGGPDTMETFTLSAPA 651
            W    DD +++G+   D D+PTRFEF +P   DYI   VPPSTVTA+++RFP+DR FVF V Y +V      VEEFTSAGGP T ETFTL+ PA
Sbjct:   28 WQSNSDDDEEEGA---DVDIPTRFEFDLPIEGDYIDMDVPPSTVTALRMRFPADRSFVFMVEYGDV------VEEFTSAGGPKTWETFTLATPA 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8294.19643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSQ6_ECTSI1.100e-6593.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JDS6_9PHAE1.250e-2552.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG22_ECTSI9.520e-2156.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8294contigEcto-sp13_S_contig8294:1087..3345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size375
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPectin lyase fold protein
Ec32 orthologEc-03_002910.1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.116697-UTR-Ecto-sp13_S_contig8294:1086..11101681464099.116697-UTR-Ecto-sp13_S_contig8294:1086..1110Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8294 1087..1110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464099.1275566-CDS-Ecto-sp13_S_contig8294:1386..14611681464099.1275566-CDS-Ecto-sp13_S_contig8294:1386..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8294 1387..1461 +
1681464099.1449-CDS-Ecto-sp13_S_contig8294:1726..18101681464099.1449-CDS-Ecto-sp13_S_contig8294:1726..1810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8294 1727..1810 +
1681464099.1608512-CDS-Ecto-sp13_S_contig8294:2492..26241681464099.1608512-CDS-Ecto-sp13_S_contig8294:2492..2624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8294 2493..2624 +
1681464099.180827-CDS-Ecto-sp13_S_contig8294:3285..33451681464099.180827-CDS-Ecto-sp13_S_contig8294:3285..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8294 3286..3345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8294.19643.1prot_Ecto-sp13_S_contig8294.19643.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8294 1387..3345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8294.19643.1

>prot_Ecto-sp13_S_contig8294.19643.1 ID=prot_Ecto-sp13_S_contig8294.19643.1|Name=mRNA_Ecto-sp13_S_contig8294.19643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MVILETKNMGFIDGTLPVFDYSYWFPRGDDGDDDGSGDSDEDVPTRFEFH
MPRPEDYIQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEVETDEEVVEEFT
SAGGPDTMETFTLSAPA
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mRNA from alignment at Ecto-sp13_S_contig8294:1087..3345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8294.19643.1 ID=mRNA_Ecto-sp13_S_contig8294.19643.1|Name=mRNA_Ecto-sp13_S_contig8294.19643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2259bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8294:1087..3345+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCAGTGGATTGGCATCAAGGAGGTACGTTCTTGCGCATGCATCCAGTC
TCGAGAGATGAGCGCTCCAAGAGCGTGGGTGGCCTTTTCCACGTACGAAC
TCAAAGGCGCTGTTGGACACTGGTTCAGGACAAGACGATGCTGACCCGGC
CCCCAAGCGTCGGGCTTGGATCTGAAGATCGTGCGGAATGCATCCAACAT
CACAGTTGGTCACCATCTTTGTCGTTGATTCCATCCATGGAACGCCAGCG
CGACCCGTGCGAATATCGACTTTGTGCCTGCCGATGACGACGACGTGCAG
ATGGTGATCCTCGAGACAAAGAACATGGGCTTCATTGACGGGACGCTTCC
GGTGTTCGACTACAGCTATTGGTTCGTGAGTGCAGCCCGCGACAAAATTT
GCGAGGAATGCTATGATTCATTCCGCAGCCCATGTTCGCCAGAACACGTG
AGATGTGACAACAGGGGGCCGCCTCACTGTGGGGAGGCGGAGCAAGCCAA
GTCGTGTAGGCCTTGGTGGAACTCCCGGCGCCAAGGGGCCAAGAGCAACG
CCGATCGTGGAGGTAGCAACCATCAACCATTTTTTCAGTGCAGCCTTTGC
CGTGCATTTTCATCGTTTCGTTCGCCCGCGTTGTTGCCAGCCACGTGGGG
ACGACGGCGACGACGATGGCAGCGGTGACTCGGACGAAGACGTACCTACC
CGGTTCGAGTTCCACATGCCGAGGGTGAGACTTTCCTGGTTACGCCGCGA
AGGCATCTTTGACGCATGGCCAGAAACGCGCCCACGAAGAGCTTTTGTGC
TCTGGGTATCGTTCCAATTTGTAAAACGGTCGAACCTGTCAGACGTAATG
TCGCTGTGAGAAGGCCAGCCATCAAATCTCAAGATACGGTCGGTGAGGCA
CGCCCTTCTCGGTTCACCTCGTCGTGCGGTTGAAAGTTCCTGCGTGGGGC
GGTTCAATCCGTTGTCATGTGTCCATCTCAAGAACGATGCCGGCTGTTGG
GGCGCCCTATTTCGTGCGCATGTTCACACAAGGTCGTGACAAGGAGCAGA
CAATCGCCTCCGTGCCTGTTTGAGGGAGCCTCGCACTCTTGACACTAACG
AATGAACTGGTGAATCCTGGAACATCTAGCTTGAACCCATATTGATCGTT
GAAGCGTGCATTAGAAGCCGCATCGCAGGAAATCGACCGCGCGTTGATGG
GACGGACGTGTGTACTATGAGCCAGGCTTACTTCAAGCCTGCATCATATT
GCTTGCTGAGTCGCCCACGAGCACCTTGGCTGTAGATGCTGTTCGGAGGG
TGTGTCGTTCAGGTCACGCCTAATGCACGAGGTGCGCAAAGTTCGCTCTT
GAGACAGCCGCGCCTTGCGCCCCGCCTGTACGAAACGTTTCTATTTGGTG
CTGCAGCCGGAAGACTACATCCAGTTCAGAGTACCCCCCTCGACGGTGAC
AGCGGTGAAGCTACGGTTCCCTTCCGACAGGCAGTTCGTCTTTAGAGTGA
GCTACGACGAGGTCGAAACCGACGAGGAAGTCGTCGAGGTGAGGAGACAA
TCAACCCTGAGGGCGGTGCGCTCCCTCTGTGCTGAAAAGGCTTACGTTGG
TGGAGAGCGAAACGCATGCACTCGCTTTCGTATCGCCGGACGACTCCTGC
AATGACCTAGGGTTGAGGCTTGTTGCGAAAGTGCGAACTTGTTTACTCTG
TGCGGAACGGAAAAATTGCGGCGTCTTAGCACGCTACGCACTTTTATTCG
TTGTTGGTGATCTTTCATCACATAATTCGTTGACTGCCTCACCTTCGGGG
ATGAGAACAGAGGATAGCAACATTTCCGGGCACATCGGTAAGGACTGAGT
GCTACAACAGCAGCAACATTTGACAACGCATGCCACCATGCACTTGCATA
CGTTCCTGTCTATGCCGCATGCTCAACCGAAGCTCACACGACCATGCCCT
GCCGAAAAAATATAAATCACGTTGTCTACCGCCTCCGCAAAGAAAGTTGT
TCATCGGTGTACAAACACCGGAGGGGGGCGCTGTTCTGAGAGGCCAGGTA
TAGTTTGCCAGCGGACGTTTGTGCGTACGCTATTCTGTAGGTGTATCGCG
GCGACATGGAAACAAACCTACCGCTAGTCTTTGCTCAATCTTACCCCGTC
CCCCCTCCTACTGATGGGCGCCAAAATTCGTTTTGGCCTCTCTGTCCAGG
AGTTCACTAGCGCCGGAGGACCCGACACCATGGAAACATTCACGTTGTCA
GCACCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8294:1087..3345+

>mRNA_Ecto-sp13_S_contig8294.19643.1 ID=mRNA_Ecto-sp13_S_contig8294.19643.1|Name=mRNA_Ecto-sp13_S_contig8294.19643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8294:1087..3345+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATCCTCGAGACAAAGAACATGGGCTTCATTGACGGGACGCTTCC
GGTGTTCGACTACAGCTATTGGTTCCCACGTGGGGACGACGGCGACGACG
ATGGCAGCGGTGACTCGGACGAAGACGTACCTACCCGGTTCGAGTTCCAC
ATGCCGAGGCCGGAAGACTACATCCAGTTCAGAGTACCCCCCTCGACGGT
GACAGCGGTGAAGCTACGGTTCCCTTCCGACAGGCAGTTCGTCTTTAGAG
TGAGCTACGACGAGGTCGAAACCGACGAGGAAGTCGTCGAGGAGTTCACT
AGCGCCGGAGGACCCGACACCATGGAAACATTCACGTTGTCAGCACCAGC
C
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