mRNA_Ecto-sp13_S_contig12359.1965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12359.1965.1
Unique NamemRNA_Ecto-sp13_S_contig12359.1965.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12359.1965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12359contigEcto-sp13_S_contig12359:1812..2355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.655271-UTR-Ecto-sp13_S_contig12359:1811..19241681462657.655271-UTR-Ecto-sp13_S_contig12359:1811..1924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12359 1812..1924 +
1681462657.672663-UTR-Ecto-sp13_S_contig12359:2305..23551681462657.672663-UTR-Ecto-sp13_S_contig12359:2305..2355Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12359 2306..2355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.6642687-CDS-Ecto-sp13_S_contig12359:1924..23051681462657.6642687-CDS-Ecto-sp13_S_contig12359:1924..2305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12359 1925..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12359.1965.1prot_Ecto-sp13_S_contig12359.1965.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12359 1925..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12359.1965.1

>prot_Ecto-sp13_S_contig12359.1965.1 ID=prot_Ecto-sp13_S_contig12359.1965.1|Name=mRNA_Ecto-sp13_S_contig12359.1965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MRSSNASRLVGKTGVLHSFLLPGSHFPYLALMYVPRTGSVLFLERNVSWS
VEEVADTMLGHAREYVKYQWVFDVKSECASTGARAAKPFFFASRLAVSYV
VLYAVCCRAHQVSSRASFFLLYRLYG*
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mRNA from alignment at Ecto-sp13_S_contig12359:1812..2355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12359.1965.1 ID=mRNA_Ecto-sp13_S_contig12359.1965.1|Name=mRNA_Ecto-sp13_S_contig12359.1965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12359:1812..2355+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTATCGCTGGACGAGTGCGTTTTCTCAGCATACTAACTTGTTTTCGTTTC
GGTAAGCAAAAACAACGCCTCTCTGCGTGTTTTTGCATATGTGTATGCGT
GTGTATATCCGGCATGCGCAGCTCGAACGCTTCCCGGCTTGTTGGGAAAA
CCGGCGTATTGCACTCCTTCCTCCTTCCTGGTTCCCATTTCCCCTACCTC
GCGTTGATGTATGTTCCACGCACGGGGAGCGTGCTATTTTTGGAACGGAA
CGTAAGTTGGAGTGTGGAGGAGGTAGCAGACACAATGCTTGGGCACGCAC
GTGAGTACGTCAAGTATCAATGGGTTTTTGATGTTAAGAGCGAGTGTGCA
AGTACAGGCGCGCGTGCTGCGAAGCCATTTTTTTTTGCTTCAAGATTGGC
TGTCTCTTATGTTGTCCTGTATGCCGTGTGTTGTAGAGCCCACCAGGTTT
CCTCACGCGCAAGTTTTTTTTTGTTATATCGTCTCTATGGGTAGTGTGCT
AGTAAGGCGCGCGGTGAGAGCCAATGTTTTTCGTCGTGATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12359:1812..2355+

>mRNA_Ecto-sp13_S_contig12359.1965.1 ID=mRNA_Ecto-sp13_S_contig12359.1965.1|Name=mRNA_Ecto-sp13_S_contig12359.1965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12359:1812..2355+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGCTCGAACGCTTCCCGGCTTGTTGGGAAAACCGGCGTATTGCA
CTCCTTCCTCCTTCCTGGTTCCCATTTCCCCTACCTCGCGTTGATGTATG
TTCCACGCACGGGGAGCGTGCTATTTTTGGAACGGAACGTAAGTTGGAGT
GTGGAGGAGGTAGCAGACACAATGCTTGGGCACGCACGTGAGTACGTCAA
GTATCAATGGGTTTTTGATGTTAAGAGCGAGTGTGCAAGTACAGGCGCGC
GTGCTGCGAAGCCATTTTTTTTTGCTTCAAGATTGGCTGTCTCTTATGTT
GTCCTGTATGCCGTGTGTTGTAGAGCCCACCAGGTTTCCTCACGCGCAAG
TTTTTTTTTGTTATATCGTCTCTATGGGTAG
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