mRNA_Ecto-sp13_S_contig82888.19636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82888.19636.1
Unique NamemRNA_Ecto-sp13_S_contig82888.19636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: D7FHD5_ECTSI (Putative microtubule-associated protein EB1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.320e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ
Sbjct:   75 KVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 108
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A2H6KJ91_9APIC (Calponin homology domain-containing protein n=1 Tax=Babesia ovata TaxID=189622 RepID=A0A2H6KJ91_9APIC)

HSP 1 Score: 56.6 bits (135), Expect = 2.410e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQSAF RL I KH+DVQ+LT+G+Y DNLEF+Q
Sbjct:   84 KVLQSAFTRLGISKHVDVQKLTKGRYQDNLEFLQ 117
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A1X6NKB6_PORUM (Calponin-homology (CH) domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKB6_PORUM)

HSP 1 Score: 55.1 bits (131), Expect = 3.110e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQ+AF +L ID+HIDV++L RGKY DNLEF+Q
Sbjct:   75 KVLQAAFTKLSIDRHIDVEKLIRGKYQDNLEFLQ 108
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A482RNB4_9ARCH (Calponin-homology (CH) domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNB4_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 7.590e-8
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            ++LQ+ F +L+I+KH+DV RL  G+YMDNLEFMQ
Sbjct:   74 KILQTCFSKLNIEKHVDVDRLISGRYMDNLEFMQ 107
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A7S3YCI0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCI0_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 7.990e-8
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            ++LQ  FD++ IDKH+DVQ+L R +Y DNLEFMQ
Sbjct:   74 KILQRGFDKIGIDKHVDVQKLIRARYQDNLEFMQ 107
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: H3GGV9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGV9_PHYRM)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQ AF +L IDKH++V RL RGKY DNLEFMQ
Sbjct:   71 KVLQKAFMQLKIDKHVEVDRLVRGKYQDNLEFMQ 104
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A7S2QJ00_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJ00_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQ+AFD+L I+KHIDV +L R KY DNLEF+Q
Sbjct:  113 KVLQAAFDKLGIEKHIDVDKLIRAKYQDNLEFLQ 146
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A2D4C098_PYTIN (Microtubule-associated protein EB1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C098_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQS F +L ID+HI+V RL RGKY DNLEFMQ
Sbjct:   78 KVLQSCFTKLKIDRHIEVDRLIRGKYQDNLEFMQ 111
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A0P1A9J2_PLAHL (Microtubule associated protein eb1 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A9J2_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQ AF +L IDKH++V RL RGKY DNLEFMQ
Sbjct:   76 KVLQKAFMQLKIDKHVEVDRLVRGKYQDNLEFMQ 109
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BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Match: A0A3M6VV07_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VV07_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.090e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ 102
            +VLQ AF +L IDKH++V RL RGKY DNLEFMQ
Sbjct:   78 KVLQKAFVQLKIDKHVEVDRLVRGKYQDNLEFMQ 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82888.19636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHD5_ECTSI4.320e-1497.06Putative microtubule-associated protein EB1 n=2 Ta... [more]
A0A2H6KJ91_9APIC2.410e-870.59Calponin homology domain-containing protein n=1 Ta... [more]
A0A1X6NKB6_PORUM3.110e-867.65Calponin-homology (CH) domain-containing protein (... [more]
A0A482RNB4_9ARCH7.590e-861.76Calponin-homology (CH) domain-containing protein n... [more]
A0A7S3YCI0_HETAK7.990e-861.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
H3GGV9_PHYRM1.070e-770.59Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2QJ00_9DINO1.070e-767.65Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2D4C098_PYTIN1.080e-770.59Microtubule-associated protein EB1 n=1 Tax=Pythium... [more]
A0A0P1A9J2_PLAHL1.080e-770.59Microtubule associated protein eb1 n=2 Tax=Peronos... [more]
A0A3M6VV07_9STRA1.090e-770.59Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82888contigEcto-sp13_S_contig82888:132..233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.4
Seed ortholog evalue4.6e-11
Seed eggNOG ortholog2880.D7FHD5
Preferred nameEB1
Model size102
KEGG koko:K10436
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000079,GO:0000226,GO:0000235,GO:0000278,GO:0000280,GO:0000281,GO:0000741,GO:0000742,GO:0000743,GO:0000746,GO:0000747,GO:0000775,GO:0000776,GO:0000819,GO:0000910,GO:0000922,GO:0001100,GO:0001671,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006276,GO:0006355,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007019,GO:0007020,GO:0007026,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007080,GO:0007088,GO:0007093,GO:0007096,GO:0007097,GO:0007127,GO:0007163,GO:0007346,GO:0008017,GO:0008022,GO:0008047,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008608,GO:0009524,GO:0009574,GO:0009605,GO:0009606,GO:0009612,GO:0009628,GO:0009629,GO:0009630,GO:0009652,GO:0009889,GO:0009891,GO:0009893,GO:0009958,GO:0009987,GO:0010005,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010970,GO:0015630,GO:0015631,GO:0016043,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022411,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0030234,GO:0030312,GO:0030473,GO:0030496,GO:0030541,GO:0030543,GO:0030674,GO:0030705,GO:0030863,GO:0030865,GO:0030981,GO:0030989,GO:0031109,GO:0031110,GO:0031111,GO:0031112,GO:0031113,GO:0031114,GO:0031116,GO:0031143,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031401,GO:0031503,GO:0031577,GO:0031578,GO:0031592,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032781,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033566,GO:0033674,GO:0034613,GO:0034622,GO:0034629,GO:0035371,GO:0035372,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0042995,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043244,GO:0043254,GO:0043462,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044732,GO:0044764,GO:0044877,GO:0045737,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045860,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0046785,GO:0046907,GO:0046983,GO:0048284,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051010,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051233,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051261,GO:0051276,GO:0051285,GO:0051286,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051494,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055028,GO:0060090,GO:0060255,GO:0060589,GO:0060590,GO:0061171,GO:0061640,GO:0061673,GO:0061982,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0070840,GO:0070925,GO:0071174,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0071988,GO:0072384,GO:0072686,GO:0072698,GO:0080090,GO:0090307,GO:0097435,GO:0098687,GO:0098772,GO:0098813,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0120025,GO:0140013,GO:0140014,GO:1901879,GO:1901880,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902440,GO:1902680,GO:1902850,GO:1902903,GO:1902904,GO:1902905,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1904825,GO:1905508,GO:1905725,GO:1905818,GO:1905819,GO:1990023,GO:1990735,GO:1990752,GO:2000112,GO:2000816,GO:2001141,GO:2001251
Exons1
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5217@1,KOG3000@2759
Cds size102
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464098.112395-CDS-Ecto-sp13_S_contig82888:131..2331681464098.112395-CDS-Ecto-sp13_S_contig82888:131..233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82888 132..233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82888.19636.1prot_Ecto-sp13_S_contig82888.19636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82888 132..233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82888.19636.1

>prot_Ecto-sp13_S_contig82888.19636.1 ID=prot_Ecto-sp13_S_contig82888.19636.1|Name=mRNA_Ecto-sp13_S_contig82888.19636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
QVLQSAFDRLHIDKHIDVQRLTRGKYMDNLEFMQ
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mRNA from alignment at Ecto-sp13_S_contig82888:132..233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82888.19636.1 ID=mRNA_Ecto-sp13_S_contig82888.19636.1|Name=mRNA_Ecto-sp13_S_contig82888.19636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82888:132..233- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTCCAATCGGCGTTCGACCGCCTTCATATCGACAAGCACATCGA
CGTTCAGCGGCTGACGAGGGGGAAGTACATGGACAACCTCGAGTTCATGC
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82888:132..233-

>mRNA_Ecto-sp13_S_contig82888.19636.1 ID=mRNA_Ecto-sp13_S_contig82888.19636.1|Name=mRNA_Ecto-sp13_S_contig82888.19636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82888:132..233- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTCCAATCGGCGTTCGACCGCCTTCATATCGACAAGCACATCGA
CGTTCAGCGGCTGACGAGGGGGAAGTACATGGACAACCTCGAGTTCATGC
AG
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