mRNA_Ecto-sp13_S_contig82886.19635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82886.19635.1
Unique NamemRNA_Ecto-sp13_S_contig82886.19635.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82886.19635.1 vs. uniprot
Match: D8LIJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.180e-28
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    1 GNGGGKSGLKSKLCSVAIDYDDGDTEERVPRVRVRLVGQKQPRFLNEGDEVDVKRGKKIRLARVVARPSSSPNIEGQY 234
            GN    SGLKSKLCSVAIDYDDGDTEERVPRVRVRLVGQKQPRFLNEGDEVDVKRGKKIR  R   R +S+   +GQ+
Sbjct: 2338 GNXXXNSGLKSKLCSVAIDYDDGDTEERVPRVRVRLVGQKQPRFLNEGDEVDVKRGKKIRSTR---RLNSAATPDGQF 2412
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82886.19635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIJ6_ECTSI1.180e-2878.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82886contigEcto-sp13_S_contig82886:188..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464098.075908-CDS-Ecto-sp13_S_contig82886:187..4601681464098.075908-CDS-Ecto-sp13_S_contig82886:187..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82886 188..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82886.19635.1prot_Ecto-sp13_S_contig82886.19635.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82886 188..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82886.19635.1

>prot_Ecto-sp13_S_contig82886.19635.1 ID=prot_Ecto-sp13_S_contig82886.19635.1|Name=mRNA_Ecto-sp13_S_contig82886.19635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
GNGGGKSGLKSKLCSVAIDYDDGDTEERVPRVRVRLVGQKQPRFLNEGDE
VDVKRGKKIRLARVVARPSSSPNIEGQYDLELLGEDGQRTS
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mRNA from alignment at Ecto-sp13_S_contig82886:188..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82886.19635.1 ID=mRNA_Ecto-sp13_S_contig82886.19635.1|Name=mRNA_Ecto-sp13_S_contig82886.19635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82886:188..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAATGGTGGTGGGAAAAGTGGATTGAAAAGCAAACTTTGCAGCGTTGC
TATCGACTACGACGACGGTGACACCGAAGAGAGAGTCCCTCGCGTACGGG
TGCGACTGGTCGGCCAGAAACAGCCACGATTCTTGAACGAGGGAGACGAG
GTGGACGTCAAGCGAGGGAAGAAAATAAGGTTAGCGAGGGTTGTTGCCCG
CCCCTCCTCTTCCCCTAATATCGAGGGGCAATATGACCTAGAGCTCTTGG
GTGAAGATGGTCAAAGAACCAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82886:188..462+

>mRNA_Ecto-sp13_S_contig82886.19635.1 ID=mRNA_Ecto-sp13_S_contig82886.19635.1|Name=mRNA_Ecto-sp13_S_contig82886.19635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82886:188..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAATGGTGGTGGGAAAAGTGGATTGAAAAGCAAACTTTGCAGCGTTGC
TATCGACTACGACGACGGTGACACCGAAGAGAGAGTCCCTCGCGTACGGG
TGCGACTGGTCGGCCAGAAACAGCCACGATTCTTGAACGAGGGAGACGAG
GTGGACGTCAAGCGAGGGAAGAAAATAAGGTTAGCGAGGGTTGTTGCCCG
CCCCTCCTCTTCCCCTAATATCGAGGGGCAATATGACCTAGAGCTCTTGG
GTGAAGATGGTCAAAGAACCAGC
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