mRNA_Ecto-sp13_S_contig8286.19632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8286.19632.1
Unique NamemRNA_Ecto-sp13_S_contig8286.19632.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8286.19632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8286contigEcto-sp13_S_contig8286:2855..3583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464097.8024013-UTR-Ecto-sp13_S_contig8286:2854..31091681464097.8024013-UTR-Ecto-sp13_S_contig8286:2854..3109Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8286 2855..3109 +
1681464097.8368883-UTR-Ecto-sp13_S_contig8286:3520..35831681464097.8368883-UTR-Ecto-sp13_S_contig8286:3520..3583Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8286 3521..3583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464097.8244615-CDS-Ecto-sp13_S_contig8286:3109..35201681464097.8244615-CDS-Ecto-sp13_S_contig8286:3109..3520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8286 3110..3520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8286.19632.1prot_Ecto-sp13_S_contig8286.19632.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8286 3110..3520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8286.19632.1

>prot_Ecto-sp13_S_contig8286.19632.1 ID=prot_Ecto-sp13_S_contig8286.19632.1|Name=mRNA_Ecto-sp13_S_contig8286.19632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MTKLCVIKKCDFVRDLGLIPWEFIHPRGERHRVSIWHAFSVYNLLVPCFL
WLFEYSMFRRIVEELTLRCLGRHHEAGKLRGAVFPSMHMNSLGIQSPPKG
NGIACSVHNNLVVPCCLRLFEYSMSRRIVEVLVLRC*
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mRNA from alignment at Ecto-sp13_S_contig8286:2855..3583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8286.19632.1 ID=mRNA_Ecto-sp13_S_contig8286.19632.1|Name=mRNA_Ecto-sp13_S_contig8286.19632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8286:2855..3583+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATAAACAAGGCGAGCTTGTCTGCCTGGTGCTCTTGGGGGATGATACGTA
CGCGACGTCTGGAGTCTACGGTTGGACGAACTCCGGTGGGTTTACAGAGG
CGGGGGGAGGGGCCGCAAGCAAAAGGTTCGACGATGGTCGGGCATTTGCG
CGAAGAGTCGCCCTTGGCTGCTCATGAGGGACGAGCTGGTTCGGTTGCTG
ACTCAGTGGCCGTAACTCGCAAGATACGGTGCGTTTGACTGCGGGGGATC
GGAAAATGACAAAGTTGTGTGTCATCAAGAAATGTGATTTTGTGCGTGAC
CTAGGCTTGATTCCCTGGGAATTCATTCACCCCCGAGGGGAAAGACATCG
TGTGTCTATCTGGCACGCGTTTTCGGTGTACAACCTCCTTGTCCCATGCT
TCCTATGGCTTTTCGAATACTCCATGTTTAGGCGTATCGTTGAGGAATTA
ACTCTTCGATGTTTAGGTCGACACCATGAGGCCGGAAAACTGCGAGGTGC
CGTGTTTCCATCCATGCATATGAATTCCCTGGGAATTCAGTCACCCCCGA
AGGGAAACGGCATCGCGTGTTCGGTGCACAACAACCTCGTTGTCCCATGC
TGCCTAAGGCTTTTCGAATACTCCATGAGTAGGCGTATCGTTGAGGTATT
AGTTCTGCGATGTTGAAGTCGACACCGTGAAGCCGGAAAACTGCAAGGTG
CTGCAAGTATGTTTCCATCCATGCATGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8286:2855..3583+

>mRNA_Ecto-sp13_S_contig8286.19632.1 ID=mRNA_Ecto-sp13_S_contig8286.19632.1|Name=mRNA_Ecto-sp13_S_contig8286.19632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8286:2855..3583+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAAAGTTGTGTGTCATCAAGAAATGTGATTTTGTGCGTGACCTAGG
CTTGATTCCCTGGGAATTCATTCACCCCCGAGGGGAAAGACATCGTGTGT
CTATCTGGCACGCGTTTTCGGTGTACAACCTCCTTGTCCCATGCTTCCTA
TGGCTTTTCGAATACTCCATGTTTAGGCGTATCGTTGAGGAATTAACTCT
TCGATGTTTAGGTCGACACCATGAGGCCGGAAAACTGCGAGGTGCCGTGT
TTCCATCCATGCATATGAATTCCCTGGGAATTCAGTCACCCCCGAAGGGA
AACGGCATCGCGTGTTCGGTGCACAACAACCTCGTTGTCCCATGCTGCCT
AAGGCTTTTCGAATACTCCATGAGTAGGCGTATCGTTGAGGTATTAGTTC
TGCGATGTTGA
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