mRNA_Ecto-sp13_S_contig8279.19623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8279.19623.1
Unique NamemRNA_Ecto-sp13_S_contig8279.19623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8279.19623.1 vs. uniprot
Match: A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE)

HSP 1 Score: 637 bits (1643), Expect = 4.390e-213
Identity = 363/399 (90.98%), Postives = 376/399 (94.24%), Query Frame = 1 
Query:   73 MNSAAASNAFAKWETLEPAATSSSTKTERVSLAAPSLQPKLPSSQHQLQPPPTPNVLTGHGIDDSFVAAGGGFPRSPPLSREEPRPSKPIVAAAAVFAGSDSTRGERYAVDSGGSNGTIDYDGKERNTSPAGLAPFGTVDADTPARAHAALATAASGPQSLPQPQAPRALPTSRGGRNQDSEPSFWGERARPSDGGXXXXXXXXXXVAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPTRRVTRNVKSSGVESITDATVRVRFSGDKGHLGAAIKRGTNGEECRDESTATAVGRQVPEVVAAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKESQKTRFERLRAQNDEIVKEMAGLKVKFGQSMQLLRKYQSIVQEG 1269
            MNSAAASNAFAKWETLEPAATS STKTERVSLA PSL+PKLPSSQHQLQPPPTPNVLTG GIDDSFVAAGGGFPRSPPL REEPR SKP+VAAAAVFAGSDSTRGERYA DS GSNGT+DYDGKERNTSPAGL PFGTVDADTPARA AALATAA+GPQS+PQP+APRALP SRGG+NQDSEPSFWGERARPSDG XXXXXXXXX VAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPT  VTRNVKS+GVESITDA VRVRFSGD GH+GAAI+R T GEECRDES ATAVGRQVPEV  AAAAGGVA+DGGARLAELC+EDKTKVARLMQDLVKLRQEKE QKTRFERLRAQN+ IVKEMAGLKVKFGQSMQLLRKYQSIVQEG
Sbjct:    1 MNSAAASNAFAKWETLEPAATSISTKTERVSLATPSLRPKLPSSQHQLQPPPTPNVLTGLGIDDSFVAAGGGFPRSPPLPREEPRASKPVVAAAAVFAGSDSTRGERYAADSSGSNGTVDYDGKERNTSPAGLTPFGTVDADTPARAPAALATAAAGPQSIPQPEAPRALPVSRGGQNQDSEPSFWGERARPSDGXXXXXXXXXXGVAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPTGIVTRNVKSAGVESITDAAVRVRFSGDTGHVGAAIRRSTTGEECRDESMATAVGRQVPEV--AAAAGGVAIDGGARLAELCQEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKEMAGLKVKFGQSMQLLRKYQSIVQEG 397
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8279.19623.1 vs. uniprot
Match: D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 6.880e-160
Identity = 286/310 (92.26%), Postives = 295/310 (95.16%), Query Frame = 1 
Query:  340 IVAAAAVFAGSDSTRGERYAVDSGGSNGTIDYDGKERNTSPAGLAPFGTVDADTPARAHAALATAASGPQSLPQPQAPRALPTSRGGRNQDSEPSFWGERARPSDGGXXXXXXXXXXVAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPTRRVTRNVKSSGVESITDATVRVRFSGDKGHLGAAIKRGTNGEECRDESTATAVGRQVPEVVAAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKESQKTRFERLRAQNDEIVKEMAGLKVKFGQSMQLLRKYQSIVQEG 1269
            +VAAAAVFAGSDSTRGERYA DSGGSNGT+DYDGKERNTSPAGLAPFGTVDADTPARA AALATAA+GPQSLPQP+APR LP SRGGRNQDSEPSFWGERARPSDGGXXXXXXXXX VAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPD TAR+APT  VTRNVKS+GVESITDATVRVRFSGDKGHLGAAIKRGT GE+CRDEST TAVGRQVPEV  AAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKE QKTRFERLRAQN+ IVK+MAGLK KFGQSMQLLRKYQSIVQEG
Sbjct:    1 MVAAAAVFAGSDSTRGERYATDSGGSNGTVDYDGKERNTSPAGLAPFGTVDADTPARASAALATAAAGPQSLPQPEAPRTLPASRGGRNQDSEPSFWGERARPSDGGXXXXXXXXXVVAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDLTARSAPTGTVTRNVKSAGVESITDATVRVRFSGDKGHLGAAIKRGTTGEDCRDESTVTAVGRQVPEV--AAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKQMAGLKDKFGQSMQLLRKYQSIVQEG 308
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8279.19623.1 vs. uniprot
Match: A0A7S2SSJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.210e-5
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query: 1030 GVAVDGGA-----RLAELCKEDKTKVARLMQDLVKLR-----------QEKESQKTRFERLRAQNDEIVKEMAGLKVKFGQSMQLLRKYQ 1251
            G AVDG A     RL +LC  DK++VARL+  L+++            +E+ + ++R +RLR QNDEIV EMA L+ KFGQ++ L ++YQ
Sbjct:   44 GGAVDGRAKTKTARLTDLCAADKSRVARLIDQLLRVTTEHDKAVEDWGRERATFESRIQRLRKQNDEIVGEMAALRKKFGQTLTLAQQYQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8279.19623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9R0_9PHAE4.390e-21390.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS85_ECTSI6.880e-16092.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SSJ5_9STRA8.210e-543.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8279contigEcto-sp13_S_contig8279:1241..4138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1274
Hectar predicted targeting categoryother localisation
Exons3
Cds size1200
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464097.0709014-CDS-Ecto-sp13_S_contig8279:1240..12611681464097.0709014-CDS-Ecto-sp13_S_contig8279:1240..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8279 1241..1261 -
1681464097.0855944-CDS-Ecto-sp13_S_contig8279:2226..34051681464097.0855944-CDS-Ecto-sp13_S_contig8279:2226..3405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8279 2227..3405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464097.0961802-UTR-Ecto-sp13_S_contig8279:3405..34191681464097.0961802-UTR-Ecto-sp13_S_contig8279:3405..3419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8279 3406..3419 -
1681464097.1071165-UTR-Ecto-sp13_S_contig8279:4080..41381681464097.1071165-UTR-Ecto-sp13_S_contig8279:4080..4138Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8279 4081..4138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8279.19623.1prot_Ecto-sp13_S_contig8279.19623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8279 1241..3405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8279.19623.1

>prot_Ecto-sp13_S_contig8279.19623.1 ID=prot_Ecto-sp13_S_contig8279.19623.1|Name=mRNA_Ecto-sp13_S_contig8279.19623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MNSAAASNAFAKWETLEPAATSSSTKTERVSLAAPSLQPKLPSSQHQLQP
PPTPNVLTGHGIDDSFVAAGGGFPRSPPLSREEPRPSKPIVAAAAVFAGS
DSTRGERYAVDSGGSNGTIDYDGKERNTSPAGLAPFGTVDADTPARAHAA
LATAASGPQSLPQPQAPRALPTSRGGRNQDSEPSFWGERARPSDGGGKGG
GGGGGGVAKDGDAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAA
PTRRVTRNVKSSGVESITDATVRVRFSGDKGHLGAAIKRGTNGEECRDES
TATAVGRQVPEVVAAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKL
RQEKESQKTRFERLRAQNDEIVKEMAGLKVKFGQSMQLLRKYQSIVQEGE
back to top

mRNA from alignment at Ecto-sp13_S_contig8279:1241..4138-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8279.19623.1 ID=mRNA_Ecto-sp13_S_contig8279.19623.1|Name=mRNA_Ecto-sp13_S_contig8279.19623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2898bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8279:1241..4138- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCATCTAGAGATCTTCCGCGCGTATTTTTCTTACGACTGTCCGGCCCTG
ACCTACAGGTGAGATGGAGAGAGCTACAGCAGTACTGCTGAAAGGCTCTC
AGGCGGTAAGAGGGCGAAAGACCCAGGCAGAGATTTTGTCGTACGTGATC
CCTCTTTTTGGTTAGCAATCGAGTCGTCCCCCCTTTGGCCGAGCCTCTGG
CCTCTGGATCGAAGTACATGCACGTGTACCAAGAGAGCTGGATCACTTAC
GGGTAGGGCGCGAAGTGCTTTCGTAATGGCAGTCTCTCGTGTTGAGTTTC
CCCCATAACTAGAGCGATATTTTCCGTTTCCGAACCAACTTGGACAACGG
TCCCGTGTTTCATGTGCCGGCGGCAAGGTGCGAACCCTCTCTGGATACTG
CTGCGGTGTTCAGCCCCTATGACCTAACAGGTTCATTATCGTTCTGTGTG
TTTTTTAGTGTCAGTATCTGTGACGCGTTTGGTTTACTGGCGAGCCTACT
GCCGGCAGTAGCAGGCACGCGTATCCCCGTATGTATCGATGCAGATGGAG
GAGTCTGTTCGCATTTGGCGATCATATCGTGCGCTTCTCATACGCAACAT
ACGCCCCAAGTGCTTGTTAGACACTCGTTCCACACCTCTGCCTGGAGCGC
GCCGACTGAACCGGCCTCCCACCCCGCCCATCTCACACAATCTGCAAACC
ATTCCGAACGGTTCCACAGGTGCAACCACCCGCATGAACTCTGCGGCGGC
CAGCAACGCCTTCGCCAAGTGGGAAACTCTAGAACCCGCCGCCACCAGCA
GCAGCACGAAGACCGAGCGCGTATCGCTTGCGGCCCCCTCCCTCCAGCCC
AAGCTTCCCTCCTCACAACACCAACTGCAACCACCCCCTACGCCAAACGT
CCTTACCGGTCACGGTATCGACGACTCCTTCGTGGCGGCGGGCGGAGGTT
TTCCGCGTTCGCCGCCCCTTTCGCGGGAAGAACCGCGACCGTCCAAACCC
ATAGTAGCAGCTGCCGCGGTTTTCGCCGGCTCGGACAGCACCCGCGGCGA
ACGCTACGCCGTCGACAGCGGCGGTAGTAACGGCACCATCGACTATGACG
GGAAGGAGAGAAACACGTCCCCGGCGGGGCTCGCCCCGTTCGGCACGGTT
GACGCCGACACCCCCGCAAGAGCCCACGCCGCCCTCGCTACTGCCGCTTC
CGGTCCGCAGTCGTTACCACAACCGCAAGCACCACGCGCGCTGCCTACAT
CTAGAGGAGGGCGGAACCAGGACAGTGAGCCCTCGTTTTGGGGGGAGCGG
GCACGGCCATCCGATGGCGGCGGCAAAGGCGGCGGCGGGGGCGGCGGCGG
AGTTGCCAAAGACGGCGATGCGGAGGCGTTGCTCGCGCGGCTGGCTGGCA
AGGCCAAGCAGGCGGCGGCCGTGGCGTTGTCCGCGTCCGCGGCTTCGGGA
GGCATGACGCCCGACCCCACCGCTCGAGCGGCACCAACGAGAAGAGTGAC
GAGGAACGTCAAGTCCTCGGGAGTCGAATCCATTACCGATGCTACCGTTC
GAGTGAGATTCTCGGGGGATAAAGGCCACCTCGGTGCCGCCATCAAGCGA
GGCACCAACGGAGAGGAGTGCCGCGATGAGAGCACGGCTACGGCCGTTGG
CAGGCAAGTGCCGGAGGTGGTGGCGGCGGCGGCGGCGGGAGGAGTTGCCG
TCGACGGCGGCGCGAGGCTGGCGGAGCTGTGCAAGGAAGACAAGACCAAG
GTGGCTCGCCTGATGCAGGACCTCGTGAAGCTCAGGCAAGAGAAGGAGAG
CCAGAAGACCCGCTTCGAGCGGTTGCGGGCGCAGAACGATGAGATCGTGA
AGGAGATGGCCGGCCTCAAGGTTAAGTTCGGGCAGAGCATGCAGCTCCTC
AGGAAGTACCAGGTAGGTGCTGGTGGATCATGGTGCTTGAGAAATTATTA
TCGTTATCGTAGTGCGATCTCTAGGTAGGTCTGTATTTGACGTCGGACAT
GTTTGGTTTGGAAATTTCTTCAACATGTACCCAGACCGGCATCTGATGAT
GGACGTTCGCCCTAGATTTTTTCGCGAAACGAAAAACAAGGTGATGGTGG
TGATGACATATCCCGGGGAGTAAACGACAGGAACGATCGTCGATCACCGC
TCCGTCTTCTCGAACGTCACTGTGAAATGAACCTAAATTTAACCGCCCCC
CCCCCCCCGGTGTTTGTCATCGAGGTTGGGTTGTCGTCGCTTGACAACGA
CGTTGTAAAACAAGCCAATCACTTCGTGAGCTCGGCAACTAGGTTTCCGC
TTTTTTTTAAGCCTCTATTTTTTTTTTGCGGTAACCATGATCGGTGGTCG
AGTAGATTATGTTGTGTGGGGTCGAGAACCCTCACTCTGCGTCAAGGGAA
TGATCGCACCACGTTGTGTTAAGATTGGTCAAGCACCTTCGAGGCAGTTA
CAAAATGCTAATAACTGTCTCTGGAAGTGAAAGCACCAAAAAGTAAATGA
AGTCATACCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGA
ACACCCTTAGCAGGATGCAGGATGCAGCGCACCCTTCATGCGACTCGACG
AATACCTCACGGTGCTTCGCGCTCGGTGATGTAAGAGCCTGGTCCGGTTA
GAACCCGGCGTGCTCCGTCCCAGCTATGTAGGGATGCGAGGTCAATGGTC
AAGCGACTACATCATGCACGACTATGAGGACACCTCCCCCCCCCCCGCCT
GCACGTTCTCATTGTAGCCGGGCGTGACTTTCAGCAAAAGTAGCGCGCTA
ATAAAACGCGGGCGTTCAAGTTGGGGCTTTGTCGTTCTATCTGCCGCTCC
CTCTACCCCACCCTCGCCTGACAACAGAGCATCGTGCAAGAGGGCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8279:1241..4138-

>mRNA_Ecto-sp13_S_contig8279.19623.1 ID=mRNA_Ecto-sp13_S_contig8279.19623.1|Name=mRNA_Ecto-sp13_S_contig8279.19623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8279:1241..4138- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTCTGCGGCGGCCAGCAACGCCTTCGCCAAGTGGGAAACTCTAGA
ACCCGCCGCCACCAGCAGCAGCACGAAGACCGAGCGCGTATCGCTTGCGG
CCCCCTCCCTCCAGCCCAAGCTTCCCTCCTCACAACACCAACTGCAACCA
CCCCCTACGCCAAACGTCCTTACCGGTCACGGTATCGACGACTCCTTCGT
GGCGGCGGGCGGAGGTTTTCCGCGTTCGCCGCCCCTTTCGCGGGAAGAAC
CGCGACCGTCCAAACCCATAGTAGCAGCTGCCGCGGTTTTCGCCGGCTCG
GACAGCACCCGCGGCGAACGCTACGCCGTCGACAGCGGCGGTAGTAACGG
CACCATCGACTATGACGGGAAGGAGAGAAACACGTCCCCGGCGGGGCTCG
CCCCGTTCGGCACGGTTGACGCCGACACCCCCGCAAGAGCCCACGCCGCC
CTCGCTACTGCCGCTTCCGGTCCGCAGTCGTTACCACAACCGCAAGCACC
ACGCGCGCTGCCTACATCTAGAGGAGGGCGGAACCAGGACAGTGAGCCCT
CGTTTTGGGGGGAGCGGGCACGGCCATCCGATGGCGGCGGCAAAGGCGGC
GGCGGGGGCGGCGGCGGAGTTGCCAAAGACGGCGATGCGGAGGCGTTGCT
CGCGCGGCTGGCTGGCAAGGCCAAGCAGGCGGCGGCCGTGGCGTTGTCCG
CGTCCGCGGCTTCGGGAGGCATGACGCCCGACCCCACCGCTCGAGCGGCA
CCAACGAGAAGAGTGACGAGGAACGTCAAGTCCTCGGGAGTCGAATCCAT
TACCGATGCTACCGTTCGAGTGAGATTCTCGGGGGATAAAGGCCACCTCG
GTGCCGCCATCAAGCGAGGCACCAACGGAGAGGAGTGCCGCGATGAGAGC
ACGGCTACGGCCGTTGGCAGGCAAGTGCCGGAGGTGGTGGCGGCGGCGGC
GGCGGGAGGAGTTGCCGTCGACGGCGGCGCGAGGCTGGCGGAGCTGTGCA
AGGAAGACAAGACCAAGGTGGCTCGCCTGATGCAGGACCTCGTGAAGCTC
AGGCAAGAGAAGGAGAGCCAGAAGACCCGCTTCGAGCGGTTGCGGGCGCA
GAACGATGAGATCGTGAAGGAGATGGCCGGCCTCAAGGTTAAGTTCGGGC
AGAGCATGCAGCTCCTCAGGAAGTACCAGAGCATCGTGCAAGAGGGCGAG
back to top