mRNA_Ecto-sp13_S_contig8277.19622.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI) HSP 1 Score: 318 bits (814), Expect = 1.250e-102 Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1
Query: 1 QVSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
QVSIAKLFSYADG+DKLYMFVG+IAAAIHSCMMPLFIANFGSTLDELGEPV + DEKTVLESVASFCILFG+IG VAGVVGFVLV LWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDI+LNGLSGIALLVTG+IINWELGL
Sbjct: 27 QVSIAKLFSYADGRDKLYMFVGVIAAAIHSCMMPLFIANFGSTLDELGEPVRDSDEKTVLESVASFCILFGIIGLVAGVVGFVLVALWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIVLNGLSGIALLVTGLIINWELGL 194
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI) HSP 1 Score: 293 bits (750), Expect = 1.250e-89 Identity = 152/168 (90.48%), Postives = 155/168 (92.26%), Query Frame = 1
Query: 1 QVSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
QVSIAKLFSYADG+DKLYMFVGIIAAAIH+C TLDELGEPVEE DEKT+LESV SFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL
Sbjct: 27 QVSIAKLFSYADGRDKLYMFVGIIAAAIHAC-----------TLDELGEPVEEDDEKTILESVTSFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 183
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE) HSP 1 Score: 263 bits (671), Expect = 6.460e-80 Identity = 132/137 (96.35%), Postives = 135/137 (98.54%), Query Frame = 1
Query: 94 MMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
MMPLFIANFGSTLDELGEPV EGDE+T+ ESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALL+TGIIINWELGL
Sbjct: 1 MMPLFIANFGSTLDELGEPVGEGDEQTISESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLITGIIINWELGL 137
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A6H5JGF0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF0_9PHAE) HSP 1 Score: 256 bits (654), Expect = 3.250e-78 Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 1
Query: 94 MMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
MMPLFIANFGSTLDELGEPVE+ D KTVLESVASFCIL GVIG VAGVVGFVLV LWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALL+TGIIINWELGL
Sbjct: 157 MMPLFIANFGSTLDELGEPVEDSDGKTVLESVASFCILLGVIGAVAGVVGFVLVALWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLITGIIINWELGL 293
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI) HSP 1 Score: 248 bits (632), Expect = 4.520e-73 Identity = 117/168 (69.64%), Postives = 142/168 (84.52%), Query Frame = 1
Query: 1 QVSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
QV +KLF++AD +D L+MF+G IAA + +C MPLF+ FG TLD LG+P E+G+ +V E+V F +LFGVIG ++GV GF +V+LWSI+GE QALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGD ILNGL GIALL+T +++NW+LGL
Sbjct: 61 QVPFSKLFTFADQRDMLFMFIGTIAACVQACTMPLFMTTFGDTLDGLGQPTEDGEVSSVAETVQKFVVLFGVIGVLSGVSGFAMVSLWSIAGECQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDSILNGLGGIALLITAMVVNWQLGL 228
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A6H5JRQ1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ1_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.510e-61 Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 1
Query: 97 MPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIINWELGL 504
MPLF+ FG TLD LG+P E+G+ +V E+V F +LFGVIG ++GV GF +V+LWSI+GE QALRMRREYVKCILKQDIGWFD HPAGQLPTAVTANMAKVQDGLGRKIGD ILNGL GIALL+T +++NW+LGL
Sbjct: 1 MPLFMTTFGDTLDGLGQPTEDGEVASVAEAVQKFVVLFGVIGALSGVSGFAMVSLWSIAGECQALRMRREYVKCILKQDIGWFDAHPAGQLPTAVTANMAKVQDGLGRKIGDSILNGLGGIALLITAMVVNWQLGL 136
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA) HSP 1 Score: 147 bits (370), Expect = 9.690e-38 Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 1
Query: 55 MFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIIN 489
M +G AA MP FI FG TLD L + D KTV++ FC++F V+G VA V GF+ V W+I+GERQALR++ YVK IL+QD+GWFDEHPAGQLP+ VT+ M KVQDG+GRKI D ++NG + L+ +N
Sbjct: 1 MLIGTAAACTSGAAMPYFIVYFGKTLDGLNDST---DIKTVVQG---FCLVFLVVGIVASVCGFIFVLCWTIAGERQALRLKEAYVKAILRQDVGWFDEHPAGQLPSMVTSLMGKVQDGIGRKIADSMMNGAGSMGCLIAAFYLN 139
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA) HSP 1 Score: 142 bits (357), Expect = 5.430e-36 Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 1
Query: 55 MFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIIN 489
M +G+ AA + MP FI FG TLD L D VL V+ FC +F V+G V+ GF V W++SGERQALR++ YVK IL+QDIGWFDEHPAGQLP+ VT+ M KVQDG+GRK+ D I+N S I L+ +N
Sbjct: 1 MAIGVAAALVSGAGMPYFIVYFGKTLDGLN------DNADVLGVVSGFCTVFLVVGAVSFAGGFTFVLCWTMSGERQALRLKEAYVKAILRQDIGWFDEHPAGQLPSMVTSLMGKVQDGIGRKVADAIMNCASAIGQLIAAFYLN 139
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.070e-33 Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 QVSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQ---------------DIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLV 471
+VS+ +LFS AD D+ ++VG +AAA+ P F+ FG TLD L GD +++ VA+F I+F ++G VA + GFV V W+I+G+RQA RM+++YVK IL+ D+GWFDEHPAGQLPT VT +A + DG+G KI I+NG S I L +
Sbjct: 56 RVSLGQLFSLADSVDQGLVWVGSVAAAVTGAARPFFMIYFGKTLDGLNST---GDLRSI---VANFAIIFVIVGAVASITGFVAVYSWTIAGDRQATRMKQQYVKGILRXXXXXXXXXXXXXXXXDMGWFDEHPAGQLPTLVTNRLATIADGIGSKIPIAIMNGFSCIGLFI 221
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Match: A0A662Y0T4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0T4_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.300e-25 Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 1
Query: 4 VSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPVEEGDEKTVLESVASFCILFGVIGFVAGVVGFVLVTLWSISGERQALRMRREYVKCILKQDIGWFDEHPAGQLPTAVTANMAKVQDGLGRKIGDIILNGLSGIALLVTGIIIN----WELGL 504
VS+ L SYADG DKL M G++ AA P+ I G L++L ++ S+ +++ +G A V GF+ VT WS + RQA R+R YV+ IL ++IGWFD + QL + V K+Q+G+GRK+GD GL ++ V+GI+I W+L L
Sbjct: 343 VSLKDLLSYADGSDKLLMAGGVVGAAAAGIAQPIQIVLLGDVLNDLNP---SDASASITSSINDVALIYVFVGLAATVAGFLQVTCWSTTASRQAKRIRSAYVRAILTKEIGWFDVNKPMQLASRVAETTVKIQEGMGRKVGD----GLHYFSMAVSGIVIGLVKGWDLTL 506 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8277.19622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8277.19622.1 >prot_Ecto-sp13_S_contig8277.19622.1 ID=prot_Ecto-sp13_S_contig8277.19622.1|Name=mRNA_Ecto-sp13_S_contig8277.19622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp QVSIAKLFSYADGKDKLYMFVGIIAAAIHSCMMPLFIANFGSTLDELGEPback to top mRNA from alignment at Ecto-sp13_S_contig8277:3924..6305+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8277.19622.1 ID=mRNA_Ecto-sp13_S_contig8277.19622.1|Name=mRNA_Ecto-sp13_S_contig8277.19622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8277:3924..6305+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8277:3924..6305+ >mRNA_Ecto-sp13_S_contig8277.19622.1 ID=mRNA_Ecto-sp13_S_contig8277.19622.1|Name=mRNA_Ecto-sp13_S_contig8277.19622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8277:3924..6305+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |