mRNA_Ecto-sp13_S_contig8277.19621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8277.19621.1
Unique NamemRNA_Ecto-sp13_S_contig8277.19621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8277.19621.1 vs. uniprot
Match: A0A6H5K9M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M7_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.260e-28
Identity = 69/82 (84.15%), Postives = 72/82 (87.80%), Query Frame = 3 
Query:    3 MNDPSSASVTDSRMEAAADAPGVTAAPAXXXXXXXAPEADAVPATPVKAGAPDIEKQIVNAGPKADKPDDSKAKPEPKPQVS 248
            M+DPS A+VTDS MEAAADAPGVTAA  XXXXXXX  E  AVPATPVKAGAPDIEKQIVNAGPKADKPDDSK KPEPKPQ +
Sbjct:    1 MSDPSPAAVTDSSMEAAADAPGVTAAXXXXXXXXXXXEVVAVPATPVKAGAPDIEKQIVNAGPKADKPDDSKTKPEPKPQAT 82
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BLAST of mRNA_Ecto-sp13_S_contig8277.19621.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.050e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3 
Query:  162 IEKQIVNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD 275
            +EKQ+VNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD
Sbjct:    1 MEKQMVNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD 38
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BLAST of mRNA_Ecto-sp13_S_contig8277.19621.1 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.570e-12
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  162 IEKQIVNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD 275
            +E Q+VNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD
Sbjct:    1 METQMVNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8277.19621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9M7_9PHAE3.260e-2884.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHL4_ECTSI4.050e-1394.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL5_ECTSI2.570e-1292.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8277contigEcto-sp13_S_contig8277:827..3959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score75.5
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D7FHL4
Model size277
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
Cds size273
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.9249768-UTR-Ecto-sp13_S_contig8277:826..8281681464096.9249768-UTR-Ecto-sp13_S_contig8277:826..828Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8277 827..828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.9377313-CDS-Ecto-sp13_S_contig8277:828..8731681464096.9377313-CDS-Ecto-sp13_S_contig8277:828..873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8277 829..873 +
1681464096.9492638-CDS-Ecto-sp13_S_contig8277:3366..35611681464096.9492638-CDS-Ecto-sp13_S_contig8277:3366..3561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8277 3367..3561 +
1681464096.9612825-CDS-Ecto-sp13_S_contig8277:3926..39591681464096.9612825-CDS-Ecto-sp13_S_contig8277:3926..3959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8277 3927..3959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8277.19621.1prot_Ecto-sp13_S_contig8277.19621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8277 829..3959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8277.19621.1

>prot_Ecto-sp13_S_contig8277.19621.1 ID=prot_Ecto-sp13_S_contig8277.19621.1|Name=mRNA_Ecto-sp13_S_contig8277.19621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MNDPSSASVTDSRMEAAADAPGVTAAPAVAAAPAPAPEADAVPATPVKAG
APDIEKQIVNAGPKADKPDDSKAKPEPKPQVSIAKLFSYAD
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mRNA from alignment at Ecto-sp13_S_contig8277:827..3959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8277.19621.1 ID=mRNA_Ecto-sp13_S_contig8277.19621.1|Name=mRNA_Ecto-sp13_S_contig8277.19621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8277:827..3959+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGAACGACCCTTCGTCTGCTTCTGTGACGGACAGCAGGATGGAGGTG
AGTGGGCGGCGCTGTCGTTACACGCCAAGCGGTGTTGGTTTGACTCGGTA
AAGGTGTAGCCTAGGTAAGCAGCGAGCGGTCAGGGTTCTAGTGGATGTTT
CGTTGGCGAGTGAGGATCGTGTCGCGTTGTGTTGTCGCAGGCACAACTTA
TGCTTGAACAGTCAGCGGGGAGCTCTCACACGCAAAGAGCTTGAACAGGC
AGACCAGCGCGTGCGAGTCACAGGCTCACCGTCGGCTTCAAGTCGCGCGA
AAGCTTCTGTCGTCTTTCTTGCGTCTGATGCTTGGGTGCTTTCTTCCCAC
AATTGTGGGCGGGAAGCTGCTACATACCCTGGTGTTTTCTTGTGCAGACC
TCTTCCATGTAGCAGTTGGCATCTCCGTGTTTCCGAGGGCGGCCCTCCTA
ATAGCAAATGTACACACGGCAATGAAGCGACAGCCGGCCTCTCTTGCTAC
CTCTCCGTCAAACGAAAACCCAGACGCTGCCGCTGCTGTCATTTGCCAAT
GTTATCCTGAATGATTTGGCGAGTGAGGGACCCGCTGCACACTCCTCGGG
GCGAAAAGCCGGCAAACCTGTTTCTAAAATCCCCGACTCTCCTTCAGTTT
TCGATATTGACTTTCCCGCCTTTTTCACGGCCGCGGTGTAGCTTCTGTCG
AGAAGCGTGTACACGTAGTTTGTGGTGACTGGGGGGGGGCGGGCAGCGTC
CATTAGCCCGAGTGGACAGCGAAAGAGAAGCAAGCTTGCCTCGGGTACCG
TAAGGTGCATTCTTACACGTTTTGATAACCACACACGGATTCTTGCGCGG
GCAATTTCTGCAGTTTTGCCGCCTCTACCGCGCCTTGTTACAAGTGTTCA
TAGAGACACCCCGATATGCTCATGTTACTAAAAGGAACGACCATATTGTA
CCCATTCGACGTGTGCTAGCTACACTTCTTGCGTCCGTTACAGCAATGGG
AAGATTTTCTGACTGCATTCCCCAGCATTTTATGCAGGCGCTCTGTGCAG
CAGGGCTCTGCTTTTCCTCCTTGTCCTACGAACTGTATGTACCACACAAC
GTTGTGTATGCGAGGAGGTACGAACTGTTGTACACGCTGTACGCAGACCA
AGCACGCGAAGAAGGCAGTGGGTTTATTCAGACAGACGATTTCGCATATC
TGCCTCGTTTCGTGAATACACCCTGCCACGACCACCCATCTCTCTTCCCT
AAACACATTTCGTGTCTTCCTTGGCGTTGGTGAGTGAAGCTACTGCTGCC
GCCTGATTCCTCGCACGAAGCAACAAGTAGCGGCAAGCTAGCAAGCCATA
AAGTCAACAACCATTGACATGATTTCGGCAGACAGCTGTCCCACACCGTT
CGATCCAATCAATATTTATCGAGTAAGCTGTGCGACACGCGACCGCTCGC
CGACTTTCTGAACAGGCACGACTGCTATCTTCTCCTGCCCAACAAAAAAT
GCTGCTCGGGAAATAGTAGAAAACACAGGTAGCTTCCGCCGACTCGATTA
ATCCATTTCTACATGCAGTCTATCCACGGCGCTTGTAGCTGTGAAGGAAT
TGAATTCGTCGTATTGTTCACAGTACATCTACCGAGAAAACAAAACAAAG
TGTTTGTATGATGTTTCGTAAAATAATGCAAGCGCAACGGTGCCAAGGTA
GGCGCTATGGAATCCATTGCTACATGTAATATTTCTAGGACGCTTTTAGT
TATAGAGGAGGTGAACTCGTAGGGTTGTAGAATGAGAAAACAAAACACTG
CAAGCGCAGCGGTGCTGTGGTAGATGCTTTAGATATACGAAAGGAACCTT
GGTGTTTGTGGCGTATGTTTCATCTACTTTGTGGCGGTGTGCGCGTGTGA
AAATCTGTAACTCGCTTGGAAATCGCCGCTTTTTCGGGACCGCGCATCGT
CTCGTCCCGCGCAGCCCGCACCATCATGTATCACATCGTCACAGCTGCGT
GTGTGCCTAGATACCGAGCGGAGCGGGGTCACGCTGTACCAGCAGCAATT
CAAAGTGCTGACAATGACTTGAAAATTTAGTGTGTGCCCGCCAAAAACAC
CGGCACGATTCCGGGCATTGGCACAATTCAACGGGCACTAAACAAGAACC
CCCAAATTACTCAATAGATTATGTTGTACAAGTACTTCTTTTTTTTTTTC
CGCTTTGGGGGCGTCATGTCAGTGTATGCTTCCGGGTGGAGAAGAGAATG
TGCGTGCATTACATTGAGAGCCAGCACTTGAGAAATCGATATAGCCTCTT
GTTCAACACTCAGAATCTTGAGCACCATTTGTGAGCTCGGTTAAGAAGAC
CTGTCTATACAGGAGGACGTGGAACAGACATAGCACAGCAGTCACGCCAG
CGTCAACCCACCGTCATCTTACGACCACAGAGTGACAACCAGCAAACCAC
CCAACCTAGACCTGTTCCGAGAGCATGAGCTAAAGATCATGCGGCACACC
TTCGTCACGTGGCGTTGTTCTCGCTTTCCCTGTGCATCAGGCCGCTGCCG
ATGCCCCTGGTGTCACCGCTGCTCCTGCTGTAGCGGCGGCACCGGCGCCT
GCGCCGGAGGCCGATGCCGTTCCGGCTACTCCCGTCAAGGCCGGCGCTCC
TGACATAGAGAAACAGATCGTGAACGCGGGCCCTAAGGCTGACAAGCCCG
ATGACTCCAAGGCCAAGCCCGAGCCCAAGCCACAGGTCTGGTTATTGTCG
TGGCATGTTGTAAGTTCGCGTTCGCGTGTGGGTGTTGGCTGCAGTGACGC
TCGGCATAGCGTTCCCGGCCGTGCGTCATGTATCACAGGCCACGAATCAC
TGCTGTGTAGCCCTCAAGGGCTGTGTTGTAAATGATTAGAAAATAATCTT
CGAAACGTGGGACATATGCGTGCATATTGTTCGTCTCGTGTCGTTGTTTT
TATTTGCTCTGTCTTGCCGTGACTCTTGAAACAATCCTCTAATCCTCACG
TTTATCGTCGCATGTCTCCAAAGGCAGGTCGTACAAACTTACCCACGAAT
ACACCTTGTTCCAACACTATTGCGTTGTCCGTTTACACCTATGTACGCAG
GTGTCTATCGCCAAGCTTTTTTCCTACGCCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8277:827..3959+

>mRNA_Ecto-sp13_S_contig8277.19621.1 ID=mRNA_Ecto-sp13_S_contig8277.19621.1|Name=mRNA_Ecto-sp13_S_contig8277.19621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8277:827..3959+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGACCCTTCGTCTGCTTCTGTGACGGACAGCAGGATGGAGGCCGC
TGCCGATGCCCCTGGTGTCACCGCTGCTCCTGCTGTAGCGGCGGCACCGG
CGCCTGCGCCGGAGGCCGATGCCGTTCCGGCTACTCCCGTCAAGGCCGGC
GCTCCTGACATAGAGAAACAGATCGTGAACGCGGGCCCTAAGGCTGACAA
GCCCGATGACTCCAAGGCCAAGCCCGAGCCCAAGCCACAGGTGTCTATCG
CCAAGCTTTTTTCCTACGCCGAT
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