mRNA_Ecto-sp13_S_contig12353.1962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G406_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G406_ECTSI) HSP 1 Score: 150 bits (378), Expect = 8.270e-46 Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1
Query: 1 RFTGPPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSKA 240
RFTGPPF LPP KGTEKNNEKC+CMPGRA PASPK +ENHGRGSEGFIHVHRGI+GVGDLSQADYDWKNPVAEV VSKA
Sbjct: 3 RFTGPPFCLPPRKGTEKNNEKCSCMPGRAWPASPKT-RENHGRGSEGFIHVHRGIKGVGDLSQADYDWKNPVAEVAVSKA 81
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.890e-35 Identity = 63/76 (82.89%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSKA 240
PP F GTEKNNEKCTCMPGRACPASPK +ENHGRGSEGFIHVHRGI GVGDLS+ADY W NPVAEVVVSKA
Sbjct: 142 PPAF---DAGTEKNNEKCTCMPGRACPASPKT-RENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI) HSP 1 Score: 127 bits (320), Expect = 1.100e-34 Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSKA 240
PP F GTEKNNEKCTCMPGRACPASPK+ +ENHG GSEGFIHVHRGI GVGDLS+ADY WKNPVAEVVVSKA
Sbjct: 198 PPAF---DAGTEKNNEKCTCMPGRACPASPKS-RENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI) HSP 1 Score: 122 bits (306), Expect = 2.600e-33 Identity = 63/76 (82.89%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKEN-HGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSK 237
PP F GTEKNNEKCTC+ GRACPASPK P+EN GRGSEGFIHVHRGI GVGDLSQADYDWKNPVAEVVVSK
Sbjct: 127 PPAF---DAGTEKNNEKCTCIRGRACPASPK-PRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSK 198
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.850e-27 Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSKA 240
PP F G+E NNEKCTCMPGRACP ++ +E HGR SEGFIHVHRG QG+GDLS+ DY W+NPVA VVVSKA
Sbjct: 157 PPAF---DAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 228
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.160e-17 Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSK 237
PP F GTE N+E+C+ +PG CPA N + G EG+IHVHRG+ GVGDL +A YDW+NPVAE+ + K
Sbjct: 154 PPAF---DAGTEVNDERCSNIPGPGCPAGSGNNQNGPG---EGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 4.490e-16 Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 13 PPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVG-DLSQADYDWKNPVAEVVVSK 237
PP F GTE NNE CT +PG ACPA N ++ G E FIHVHRG GVG DL +A+YDW+NPVAEV +++
Sbjct: 148 PPAF---DAGTEANNELCTHIPGPACPADSGNMEDVPG---EEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 4.800e-16 Identity = 44/81 (54.32%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 1 RFTGPPFFLPPP--KGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVG-DLSQADYDWKNPVAEVVVS 234
R G PP GTE NNE CT +PG ACPA N ++ G EGFI V RG GVG DL +A+YDW+NPVAEVVV+
Sbjct: 122 RLVGTEKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGPG---EGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: A0A3D0SSZ2_9GAMM (Spondin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0SSZ2_9GAMM) HSP 1 Score: 72.4 bits (176), Expect = 1.030e-13 Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 40 GTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSK 237
G+E N+E C +PG C +P G G EGF+H+H GI G+GDL A+YDW+NP+A V V K
Sbjct: 155 GSEPNDELCKSIPGPDCGGEGGSP----GAGGEGFVHIHAGIHGIGDLQAAEYDWRNPMASVTVQK 216
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Match: A0A1Y1QLV8_9GAMM (Spondin domain-containing protein n=2 Tax=Thiothrix TaxID=1030 RepID=A0A1Y1QLV8_9GAMM) HSP 1 Score: 72.0 bits (175), Expect = 1.420e-13 Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 40 GTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHVHRGIQGVGDLSQADYDWKNPVAEVVVSK 237
G+E NNE CT +PG ACP S + +EGFIHVH GI G GDLS A YDW+NPVA V + +
Sbjct: 153 GSEANNELCTHVPGPACPGSANLRATDT---AEGFIHVHNGIHGQGDLSAAKYDWRNPVALVNIRR 215 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12353.1962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12353.1962.1 >prot_Ecto-sp13_S_contig12353.1962.1 ID=prot_Ecto-sp13_S_contig12353.1962.1|Name=mRNA_Ecto-sp13_S_contig12353.1962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp RFTGPPFFLPPPKGTEKNNEKCTCMPGRACPASPKNPKENHGRGSEGFIHback to top mRNA from alignment at Ecto-sp13_S_contig12353:185..427+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12353.1962.1 ID=mRNA_Ecto-sp13_S_contig12353.1962.1|Name=mRNA_Ecto-sp13_S_contig12353.1962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12353:185..427+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12353:185..427+ >mRNA_Ecto-sp13_S_contig12353.1962.1 ID=mRNA_Ecto-sp13_S_contig12353.1962.1|Name=mRNA_Ecto-sp13_S_contig12353.1962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12353:185..427+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |