mRNA_Ecto-sp13_S_contig8273.19619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5L1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U0_9PHAE) HSP 1 Score: 528 bits (1359), Expect = 1.620e-186 Identity = 261/289 (90.31%), Postives = 269/289 (93.08%), Query Frame = 3
Query: 276 LPPPDPRHANMTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVGESAYVPPPTGAQIGTSSYSQKWRDWNQQQKDTNLENYLQQRRDTGE 1142
LPP DPRHANMTIERLFSEG+I TGGFSYNHPQF REMAKF +KVNGKPTWQKQPSGPSTL NNIVVTDHFRSLAPFLGP AKLCKPRPSTDRLF TKQRVQQ KSGRRH DAKNAPWRVCVTVA+ +APK LKQLEIGM DASKAKGGGAVNPWQLQADGEPDARRFDCVTGSY VMDTVATGLDS+AHHQALVNKEL+L HGALTTFVLDLDPVNLDT IDDVAEIARGTAD V+DGVGESAYVPPPT AQ+GTSSYSQKWRDWNQQQK TNLENYLQQRRDTGE
Sbjct: 33 LPPTDPRHANMTIERLFSEGYIVTGGFSYNHPQFEREMAKFNGVKVNGKPTWQKQPSGPSTLHNNIVVTDHFRSLAPFLGPLAKLCKPRPSTDRLF-TKQRVQQSIKSGRRHHDAKNAPWRVCVTVANLSAPKGLKQLEIGMTDASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYHVMDTVATGLDSHAHHQALVNKELILKHGALTTFVLDLDPVNLDTFIDDVAEIARGTADAVIDGVGESAYVPPPTAAQMGTSSYSQKWRDWNQQQKYTNLENYLQQRRDTGE 320
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI) HSP 1 Score: 348 bits (892), Expect = 7.720e-114 Identity = 173/286 (60.49%), Postives = 202/286 (70.63%), Query Frame = 3
Query: 282 PPDPRHANMTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVGESAYVPPPTGAQIGTSSYSQKWRDWNQQQKDTNLENYLQQRRDTG 1139
P DP++ MT ERLFSEGHIA G FSYNHPQFA E A F +K++GK WQ+QP GPSTL NN+ + D F SLAPFL P LCK R ST RLF+ KQR QQYT SGRRHRD KN WR+C+TV +P AP K+LE+G+ADA AKG A NPWQL+ADG PD DC TGSY +MD V TG S+AHHQA+++K L HGA T FV+D DP++ T +DDV IA GTAD V GVG AYVPPPT AQIG S S + DWN+ K+ LENY+Q RRD G
Sbjct: 92 PVDPQYERMTTERLFSEGHIAMGSFSYNHPQFAEEAAAFNGVKIDGKSVWQQQPCGPSTLHNNVTIIDRFPSLAPFLVPLDNLCKRRDSTVRLFV-KQRAQQYTTSGRRHRDGKNGRWRMCITVHNPGAPLGFKRLEVGVADARVAKGDQATNPWQLKADGTPDMECIDCTTGSYQIMDEVGTGTASHAHHQAIIDKNPLPQHGAPTMFVVDFDPISPHTFVDDVERIAEGTADKVKAGVGVPAYVPPPTQAQIGRSCGSTQTSDWNRLNKEKKLENYIQDRRDGG 376
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5K5U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U5_9PHAE) HSP 1 Score: 283 bits (723), Expect = 3.610e-88 Identity = 142/249 (57.03%), Postives = 170/249 (68.27%), Query Frame = 3
Query: 306 MTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVGESAYVPPPTGAQIGTS 1052
MT ERLFSEGHIA G F+YNHPQFA E A F +KVN KP Q QPS PSTL +IV+ D+F SL PF LCKPRP T+RL HRD KN PWR+C+T DPAAP K+ E+G+ADAS AKGGGA+ P QL+ D +PD+ RFDC GSY +MD V TG +S+AHHQA+++K +L H ALTTFV+DLDP++ T +DDV IA+GT+ V GVG AYVP PT AQIG S
Sbjct: 1 MTTERLFSEGHIAIGSFAYNHPQFAEEAAAFNTVKVNRKPVRQTQPSSPSTLHKSIVIADYFSSLTPFSKQLEGLCKPRPKTNRL----------------HRDGKNGPWRMCITAHDPAAPPHTKRSEVGVADASNAKGGGALYPRQLKDDRKPDSVRFDCAAGSYHIMDKVGTGTNSHAHHQAIIDKSVLSTHEALTTFVIDLDPISPHTFVDDVENIAKGTSIEVKAGVGVPAYVPTPTQAQIGRS 233
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5J6K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K4_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.520e-86 Identity = 128/185 (69.19%), Postives = 148/185 (80.00%), Query Frame = 3
Query: 306 MTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGP-SAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQ 857
MT R+F+EGHIATG FSYNHP F +E A F +KV+GKP WQKQP GPSTL N++V+ D F SLAPFLGP KLCKPRP+TDRLF+ KQR QQYT SGRRHRD KN PWR+CVT+ DPAAP KQLEIG+AD SKAKG GAVNP+Q +ADG PD+RRFDC +GSY +MD VATG S+A H+
Sbjct: 1 MTTARIFNEGHIATGSFSYNHPLFEKEAAAFNDIKVDGKPVWQKQPPGPSTLHNSVVINDRFPSLAPFLGPVEKKLCKPRPTTDRLFL-KQRAQQYTTSGRRHRDGKNGPWRMCVTIHDPAAPPHAKQLEIGLADGSKAKGDGAVNPFQTKADGTPDSRRFDCPSGSYHLMDEVATGTVSHASHK 184
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5KI01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI01_9PHAE) HSP 1 Score: 269 bits (688), Expect = 9.290e-85 Identity = 144/263 (54.75%), Postives = 168/263 (63.88%), Query Frame = 3
Query: 306 MTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVGESAYVPPPTGAQIGTSSYSQKWRDWNQQQK 1094
MT RLFS+GHIATG FSYNHPQFA+E F + + GK WQ+QPSGPSTL NN+ + DHF SLAPFLGP KLCK R STDRLF+ KQR QQY SGRRHRD +N WR+CVTV +P AP K+LE+G+ADA AKGG A+NPWQL+AD LL HGA TFVLD DP++ +T IDDVA IA GTAD V GVG SAYV P T QIG S S+K R +N+Q++
Sbjct: 86 MTTARLFSDGHIATGNFSYNHPQFAKEADAFNGVTIGGKRVWQRQPSGPSTLHNNVTIIDHFSSLAPFLGPLEKLCKLRDSTDRLFL-KQRAQQYITSGRRHRDGRNGLWRMCVTVHNPGAPPGFKRLEVGVADARVAKGGDAINPWQLKAD-------------------------------------NLLREHGAPATFVLDFDPIDPNTFIDDVARIAEGTADKVKAGVGVSAYVCPRTEEQIGKSCASEKMRAYNKQRE 310
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE) HSP 1 Score: 259 bits (661), Expect = 9.260e-80 Identity = 132/233 (56.65%), Postives = 151/233 (64.81%), Query Frame = 3
Query: 306 MTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVG 1004
MT RLF +GHIA FSYNHPQFA+E F + + GK WQ+QPSGPSTL N + + DHF SLAPFLGP KLCKPR STDRLF+ KQR QQY SGRRHRD KN WR+CVTV +P AP K+LE L+ADG PD DC GSY MD V TG S+AHHQ +++K LL HGA TTFVLD DP++ +T IDDVA IA GT D V VG
Sbjct: 86 MTTARLFGDGHIARSNFSYNHPQFAKEADTFNGVTIAGKQVWQRQPSGPSTLHNKVTIIDHFSSLAPFLGPLEKLCKPRDSTDRLFL-KQRAQQYITSGRRHRDGKNGLWRMCVTVHNPGAPPGFKRLE-------------------LKADGTPDMECIDCPAGSYHTMDEVGTGTASHAHHQEIIDKNLLREHGAPTTFVLDFDPIDPNTFIDDVARIAEGTVDKVKAAVG 298
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5KRD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD3_9PHAE) HSP 1 Score: 197 bits (500), Expect = 3.830e-57 Identity = 118/285 (41.40%), Postives = 152/285 (53.33%), Query Frame = 3
Query: 291 PRHANMTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLMHGALTTFVLDLDPVNLDTSIDDVAEIARGTADVVVDGVG-ESAYVPPPTGAQIGTSSYSQKWRDWNQQQKDTNLENYLQQRRDTGE 1142
P + +MT ERL +EGH+ATG F +H FA+E K + + GK R ++ RS W +C+T+ DPAAP + KQLEIG D SKAKGG A+NP++ + DG DA FDC + SY +MD V TGL +AHHQA ++K LL +HGA TTFV D++P+N DT I DV IARGTA + G ESA VPPPT QIG SS ++ DW++ QK+TNLE Y + RR GE
Sbjct: 50 PEYEDMTTERLVAEGHVATGSFFIDHNHFAQEAEKSNVVTIGGK-------------RGDVTEMGKTRS-------------------------------------------GGW-MCITIHDPAAPSNFKQLEIGEVDGSKAKGGHAINPFRAKPDGTTDATTFDCPSPSYHIMDRVGTGLHFHAHHQAKIDKRLLDVHGAATTFVDDMNPINPDTFIQDVDVIARGTAGALGPNAGCESAPVPPPTDEQIGVSSGPEQTSDWHKLQKETNLEAYTEDRRAGGE 277
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5KU06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU06_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.080e-50 Identity = 87/144 (60.42%), Postives = 104/144 (72.22%), Query Frame = 3
Query: 291 PRHANMTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGKPTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAK 722
P + MT ERLF+E H+ATG F +H +FA+E +F + + GKP WQK+PSG STL N+I + +HF SLAP L P LCKPRP T R F KQR QQYTKSGRRHRD KNA WR+C+TV DPAA K+LEIG+ADASK K
Sbjct: 39 PEYEEMTTERLFAECHVATGSFFIDHNRFAQEGERFNDVTIGGKPVWQKKPSGHSTLHNSIAIAEHFPSLAPLLIPLEALCKPRPGTARRF-KKQRAQQYTKSGRRHRDGKNAEWRMCITVHDPAALSLFKELEIGVADASKVK 181
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: A0A6H5K7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M5_9PHAE) HSP 1 Score: 125 bits (314), Expect = 7.000e-29 Identity = 72/203 (35.47%), Postives = 95/203 (46.80%), Query Frame = 3
Query: 291 PRHANMTIERLFSEGHIATGGFSYNHPQFAREMAKFVCLKVNGK----PTWQKQPSGPSTLRNNIVVTDHFRSLAPFLGPSAKLCKPRPSTDRLFITKQRVQQYTKSGRRHRDAKNAPWRVCVTVADPAAPKDLKQLEIGMADASKAKGGGAVNPWQLQADGEPDARRFDCVTGSYPVMDTVATGLDSYAHHQALVNKELLLM 887
P + MT ERLF+EGH+ATG F +H +FA+E KF + + GK P W+ NA WR+ +T+ DPAAP + QLEIG+ D SKAKGG A+NP++ + DG DA FDC + SY +MD V TG S+AHHQA ++ LL M
Sbjct: 30 PEYEEMTTERLFAEGHVATGSFFIDHNRFAQEAEKFNDVTIGGKRATSPRWE---------------------------------------------------------------NAEWRMFITIHDPAAPSNFIQLEIGVVDGSKAKGGHAINPFRAKPDGSTDATTFDCPSPSYHIMDRVGTGHHSHAHHQAKIDTSLLAM 169
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Match: D7G2V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V3_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 1.150e-6 Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 1 MATSSNPRTPLREPKTKRNTGLDIFGLGSDDD-DFCTPPRVTLKEANT 141
MA SNPRT LREPK KR+TGLDIFGLGS+DD D P V +++ T
Sbjct: 7 MAIFSNPRTTLREPKRKRDTGLDIFGLGSEDDVDLTVTPSVGDEDSET 54 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8273.19619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8273.19619.1 >prot_Ecto-sp13_S_contig8273.19619.1 ID=prot_Ecto-sp13_S_contig8273.19619.1|Name=mRNA_Ecto-sp13_S_contig8273.19619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp MWTEAHRVDGQEEEEALLVEGEGGAERTSPQLPPPDPRHANMTIERLFSEback to top mRNA from alignment at Ecto-sp13_S_contig8273:3263..5718+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8273.19619.1 ID=mRNA_Ecto-sp13_S_contig8273.19619.1|Name=mRNA_Ecto-sp13_S_contig8273.19619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8273:3263..5718+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8273:3263..5718+ >mRNA_Ecto-sp13_S_contig8273.19619.1 ID=mRNA_Ecto-sp13_S_contig8273.19619.1|Name=mRNA_Ecto-sp13_S_contig8273.19619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8273:3263..5718+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |