prot_Ecto-sp13_S_contig8270.19617.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8270.19617.1
Unique Nameprot_Ecto-sp13_S_contig8270.19617.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.270e-27
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPP 73
            MVASQMF+GTAATLIASSTAFVAP+AVRSV TT SS  LKMSAGSDYVATLPGAP SD KIFDPLGLSD   P
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAP 73          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.070e-26
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPP 73
            MVASQMF+GTAATLIASSTAFV P+A+RSVA+T SSS  KMSAGSDYVATLPGAP SD KIFDPLGLSD   P
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAP 73          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.530e-24
Identity = 59/73 (80.82%), Postives = 63/73 (86.30%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPP 73
            MVASQMFLGTAA LIASSTAFVAPVAVRS A  +++S+LKMSAGSDYVATLPGAP SD KIFDPL LSD   P
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAP 73          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.430e-24
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPPA 74
            MVA+Q+FLG+AATLIASSTAFVAP+AVRS A  +SSS+LKMSAGSDYVATLPGAP  D KIFDPL LSD   PA
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPA 74          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-21
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
Query:    4 SQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPP 73
            S MFLGTAATLIASSTAFVAP+AVRS A  +S+S+LKMSAGSDYVATLPGAP  D KIFDPL LSD   P
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEP 74          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.740e-20
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRK 60
            MVASQMF+G AATLIASSTAFVAP+AV SVATT SS+SLKMSAGSDYVATLPGAP SD K
Sbjct:    1 MVASQMFIGAAATLIASSTAFVAPMAVPSVATTTSSASLKMSAGSDYVATLPGAPFSDGK 60          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JWJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.120e-18
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVA-TTASSSSLKMSAGSDYVATLPGAPSSDRK 60
            MVASQMF+GTAATLIASSTAFVAP+AVRSVA TT SSSSL MSAGSDYVATLPGAP SD K
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGK 61          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.510e-18
Identity = 57/68 (83.82%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MVASQMFLGTAATLIASSTAFVAPVAVRSVA-TTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGL 67
            MVASQMF+GTAATLIASSTAFVAPVAVRSVA TT SSSSL MSAGSDYVATLPGAP SD K   P  L
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRL 68          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: A0A6H5J914_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J914_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.650e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    6 MFLGTAATLIASSTAFVAPVAVRSVATTA-SSSSLKMSAGSDYVATLPGAPSSDRKIF 62
            MF+GTAATLIASSTAFVAP+AVRSVA TA SSSS+ MSAGSDYVATLPGAP SD K F
Sbjct:    1 MFIGTAATLIASSTAFVAPMAVRSVAITAPSSSSVMMSAGSDYVATLPGAPFSDGKGF 58          
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.950e-14
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0
Query:    4 SQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVATLPGAPSSDRKIFDPLGLSDAPPP 73
            S MFLGTAATLIASS AFV P+AVRS A  +S+S+LKMSAG+DY+ATLPGA   + KIFD L L+D   P
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADP 71          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8270.19617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K8D0_9PHAE9.270e-2784.93LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JYI8_9PHAE3.070e-2682.19LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q9_ECTSI3.530e-2480.82Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI6.430e-2478.38Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.140e-2178.57Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S4_ECTSI4.740e-2086.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWJ2_9PHAE3.120e-1888.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWB4_9PHAE6.510e-1883.82LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J914_9PHAE1.650e-1684.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G7S0_ECTSI1.950e-1467.14Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..99
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.553

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8270contigEcto-sp13_S_contig8270:3972..6647 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8270.19617.1mRNA_Ecto-sp13_S_contig8270.19617.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8270 2857..6647 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8270.19617.1 ID=prot_Ecto-sp13_S_contig8270.19617.1|Name=mRNA_Ecto-sp13_S_contig8270.19617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MVASQMFLGTAATLIASSTAFVAPVAVRSVATTASSSSLKMSAGSDYVAT
LPGAPSSDRKIFDPLGLSDAPPPATSRSGERPRSSTGVWPCLRPLVSLS*
back to top