mRNA_Ecto-sp13_S_contig827.19613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig827.19613.1
Unique NamemRNA_Ecto-sp13_S_contig827.19613.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig827.19613.1 vs. uniprot
Match: D7G7U1_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 5.510e-98
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 1 
Query:  346 IREISKASDLQRLARVFDHRRINTSCRETFAAAVRDANPAVVEMWLHHGKEHKGAYFLDAFRSWGEATAAGHVGGRGGNRSPPSIPLHLSCHTGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIIR 795
            IREISKASDLQRLARV DHR+INTSCRETFAAAVRDANPA VEMWLHHGKEHKGAYFLDAFR+WGEA AAGHVGGRGGNRSPPSIPLHLSCH GAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAI+R
Sbjct:    2 IREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAYFLDAFRAWGEAAAAGHVGGRGGNRSPPSIPLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVR 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig827.19613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U1_ECTSI5.510e-9895.33Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig827contigEcto-sp13_S_contig827:153..2466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score299.3
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D7G7U1
Model size795
KEGG koko:K20175
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759
Cds size795
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.2767482-CDS-Ecto-sp13_S_contig827:152..8071681464096.2767482-CDS-Ecto-sp13_S_contig827:152..807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig827 153..807 -
1681464096.2879527-CDS-Ecto-sp13_S_contig827:2326..24661681464096.2879527-CDS-Ecto-sp13_S_contig827:2326..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig827 2327..2466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig827.19613.1prot_Ecto-sp13_S_contig827.19613.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig827 153..2466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig827.19613.1

>prot_Ecto-sp13_S_contig827.19613.1 ID=prot_Ecto-sp13_S_contig827.19613.1|Name=mRNA_Ecto-sp13_S_contig827.19613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
MSTDAIASWLRVRQINSLAGHFLAKAAASCDEPDKFKGNATLAGVKRSQP
AHHRVFWREETTSTSLWEGAYRAIEDATAAKGRKKKRNSPTPPSSSLAKD
LDDPKPTKWLSPAATIREISKASDLQRLARVFDHRRINTSCRETFAAAVR
DANPAVVEMWLHHGKEHKGAYFLDAFRSWGEATAAGHVGGRGGNRSPPSI
PLHLSCHTGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSW
SPRARCPGTRNAIIR
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mRNA from alignment at Ecto-sp13_S_contig827:153..2466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig827.19613.1 ID=mRNA_Ecto-sp13_S_contig827.19613.1|Name=mRNA_Ecto-sp13_S_contig827.19613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig827:153..2466- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGGACGCGATCGCTTCCTGGCTTCGTGTTCGGCAAATCAATTC
TTTGGCCGGTCACTTCCTCGCGAAGGCGGCGGCGTCTTGCGATGAACCCG
ACAAGTTCAAAGGAAATGCCACCCTCGCCGGCGTAAAAAGGTAAGCAATC
AAGAGGAAGTCTTCTGTGTATCCCCGGATCGAAGGTCTTCAGTAGAGAGG
GCCGCAGGGATTATAATTTGAAACTGCGAATGACGATTGACAAACGAGAC
GACGAAAAAGGACGGAGTGGCCCGGCCGCGTGTTTTTCACACCCAGCCCC
CGCCAATTCGCCTTTATCCCTTGTGTGGTCGTGACAAAATCCACCCAACT
GGCGCCCGGGTTACAAGTCCCGAAATACAGCAAGAGCATAGGTACATGCT
AGCGTGCGGTCAGGTTTCGGAGTACAGTGCATGTACAATAGTCCTCGCAC
AGCAGCAATGTAAGGTGGGTTTCGGAGTGCTTTCTTGAAAGAATGCCCAC
CGAGGACGTTTATGGAGTGAAGACTGCATCAAAACTATTTGCGTGGTGAA
CAACGATATGCATAGTGAAGTACACGTATTCCACCCCATCATCTACATAT
CAACTTGCCTTGTTGGGCAATAAATTATAGCTCGCGTCCCGCGCAAACTA
TAATAGAGGGAATCCACGTGTCGTGAGAATTTTGACGTTTGACGTGAAAT
ATTGACATTTCACGAAGTTTTGACGTGACCATGTTCCGCCGCTTTTTTGG
GGGCAAACTCTGACGTCGATTATTTTTTCCAAGTTGCGTCAAAACACAAA
ACCCCGCGAAAGGAATGACGCTTCAAACATCGCTAGACTGGCACACACAC
GCTTGCTCTGTTACCGTCACCAAATCACGAAAGGAGCGCCGTCAGCAGCG
AAAACATTATTGACCACGCCTGCCTTCTGATTGCTCCTAGCGGTCCAGCA
CACACACACACATACGTCTCGGAGAATTCTCACGGCGACGCAGTGGCCGG
ACTCGCGTGTTCGGCGCGCGCGTTCGGTAGGTTCGGTAGGTGCGCCGTCG
GGACTGCGCACGGGCTTTCAGCAGCGATAGGGGGCTTAGGCAGTAGTCGA
ATAGGAGTCCCCCCCTCGAACGGAGCACAGATAGAGGAGTAAGGGAGGGT
GCACAGACGTGGCCGGTCAGTAGGTGCATCTCGCCGGCACCCTCGCGGGG
TTGGGTGCTCTGCTGCCTCAGTGACATTGGTACACAGCAGCAGCAGCAGC
TCAGCGAGCAGCTGCTCCAGCAACAACAACGGTTTAACGCCTGGGAAGTC
GCCGCGGCAAAGGAAGGAAGGTCGGCGGGATGAGTAGGAGGGGTATACAC
CAAGTCTCCTTGGAGCCACCCAGTCTCCTGGGAGCCTGGGACCAGTGTGG
GAGTGTGGGTCTTCGCTTCAGCATGTCGACCCTCTGGGTGGCAGCCCGAA
CCAACTCTAGGTCGCGTCAACACTACACTGCACCATTTTTTTTTTTCCGC
TCAGGTACCAACGGGCACACGCGGTGCGATTTTTTTCGCGTCAAAATCCT
CAACCGTTACTTATACGTTGGCGTCAATCCTCAAAGGTCAAAATTCCGCG
TCATCCTTAGAGGATACCCTATAATAACGCCTTGGTACACGTCGTGGCAC
ATTTCTCAGATCGCAGCCTGCGCACCACCGCGTCTTCTGGCGAGAAGAGA
CTACATCCACGTCGCTATGGGAAGGTGCTTATCGAGCAATAGAGGACGCA
ACAGCCGCGAAAGGCAGAAAGAAGAAGCGAAACTCACCAACACCGCCTTC
TTCCTCCTTAGCCAAAGATCTCGACGATCCGAAACCAACCAAATGGCTTA
GTCCCGCCGCTACGATTCGAGAAATATCGAAGGCTTCCGATTTGCAGCGG
CTAGCTCGAGTGTTTGACCACAGGAGAATCAACACATCGTGCCGGGAGAC
ATTCGCAGCGGCCGTACGAGACGCCAACCCGGCCGTTGTTGAGATGTGGC
TACACCACGGCAAAGAGCACAAAGGTGCCTACTTTCTTGACGCTTTTCGG
TCCTGGGGGGAAGCTACTGCTGCCGGCCATGTTGGCGGTAGGGGGGGAAA
CCGATCTCCACCTAGCATCCCATTGCACCTGTCGTGCCATACAGGGGCGC
CAGAAATCGTGTCGGTGCTTCTGCGCTTCATGACCGAGTCGTACTCGTGC
GATGATCGCATCGCCATGGTGAATGCGAGAGATCTCAATGGAAGAACGGC
TCTGCACTTGTCGAGCTGGTCGCCGAGGGCTCGTTGTCCTGGTACAAGAA
ATGCCATAATCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig827:153..2466-

>mRNA_Ecto-sp13_S_contig827.19613.1 ID=mRNA_Ecto-sp13_S_contig827.19613.1|Name=mRNA_Ecto-sp13_S_contig827.19613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig827:153..2466- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGGACGCGATCGCTTCCTGGCTTCGTGTTCGGCAAATCAATTC
TTTGGCCGGTCACTTCCTCGCGAAGGCGGCGGCGTCTTGCGATGAACCCG
ACAAGTTCAAAGGAAATGCCACCCTCGCCGGCGTAAAAAGATCGCAGCCT
GCGCACCACCGCGTCTTCTGGCGAGAAGAGACTACATCCACGTCGCTATG
GGAAGGTGCTTATCGAGCAATAGAGGACGCAACAGCCGCGAAAGGCAGAA
AGAAGAAGCGAAACTCACCAACACCGCCTTCTTCCTCCTTAGCCAAAGAT
CTCGACGATCCGAAACCAACCAAATGGCTTAGTCCCGCCGCTACGATTCG
AGAAATATCGAAGGCTTCCGATTTGCAGCGGCTAGCTCGAGTGTTTGACC
ACAGGAGAATCAACACATCGTGCCGGGAGACATTCGCAGCGGCCGTACGA
GACGCCAACCCGGCCGTTGTTGAGATGTGGCTACACCACGGCAAAGAGCA
CAAAGGTGCCTACTTTCTTGACGCTTTTCGGTCCTGGGGGGAAGCTACTG
CTGCCGGCCATGTTGGCGGTAGGGGGGGAAACCGATCTCCACCTAGCATC
CCATTGCACCTGTCGTGCCATACAGGGGCGCCAGAAATCGTGTCGGTGCT
TCTGCGCTTCATGACCGAGTCGTACTCGTGCGATGATCGCATCGCCATGG
TGAATGCGAGAGATCTCAATGGAAGAACGGCTCTGCACTTGTCGAGCTGG
TCGCCGAGGGCTCGTTGTCCTGGTACAAGAAATGCCATAATCAGG
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