mRNA_Ecto-sp13_S_contig8260.19608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8260.19608.1
Unique NamemRNA_Ecto-sp13_S_contig8260.19608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 677 bits (1746), Expect = 2.670e-234
Identity = 368/405 (90.86%), Postives = 379/405 (93.58%), Query Frame = 1 
Query:    1 ESKAASLDQVDCFLRTKSQKESEWAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGGAAESASGIEEELEARRRRSTNRSPSSGGDAF--GLRPGATSALDTDQPLAGGAAGLIEAAPDMAKEALSSLASVGNSAFHTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREIR 1209
            ESKAAS+DQ+D FLR KSQKES+WAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGGAAESASGIEEELEARRRRS NRSPSSGGD    G RPG TSALDTDQPLAGGAAGLIEAAPDMAKEALSSLASVGNSAF+TTRRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDC+ APDPRDVVWKNIA+  P         QNDLRQNVAAWLVAAGAIFWS PVLLIQ WASYS+LEKIFP+LADLDPDSFLYYVIAGYLPVVLL XXXXLLPFLFQ ALAYRYERRKSHSEVQQ+ILTRYFTYQVANIYVTVASGSIISALQEILDDP +VLNILGETFPAVAVYFLDVIVVK+FVGLPFELLRGWPLIRVLWSQRCTNRDFATEREIR
Sbjct:  378 ESKAASVDQIDFFLRAKSQKESQWAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGGAAESASGIEEELEARRRRSKNRSPSSGGDELKPGPRPGVTSALDTDQPLAGGAAGLIEAAPDMAKEALSSLASVGNSAFNTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCEPAPDPRDVVWKNIAVPQP---------QNDLRQNVAAWLVAAGAIFWSFPVLLIQLWASYSELEKIFPVLADLDPDSFLYYVIAGYLPVVLLLXXXXLLPFLFQ-ALAYRYERRKSHSEVQQSILTRYFTYQVANIYVTVASGSIISALQEILDDPASVLNILGETFPAVAVYFLDVIVVKIFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREIR 772
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 1.260e-109
Identity = 186/206 (90.29%), Postives = 194/206 (94.17%), Query Frame = 1 
Query:    1 ESKAASLDQVDCFLRTKSQKESEWAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGGAAESASGIEEELEARRRRSTNRSPSSGGDAF--GLRPGATSALDTDQPLAGGAAGLIEAAPDMAKEALSSLASVGNSAFHTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPP 612
            ESKAAS+DQ+D FLRTKSQKES+WAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGG AES SGIEEELEARRRRS N+SPSSGGD    G RPGATSALDTDQPLAGGAAGLIEAAP+MAKEALSSLASVGNSAFHTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACA+SRQVLLAPRPDWCDC+ APDPRDVVWKNIA+  P
Sbjct:  377 ESKAASVDQIDFFLRTKSQKESQWAMQEVDDVSDVSPSSRRVDEGRTGSSSLDVEGGGGAESLSGIEEELEARRRRSMNQSPSSGGDELKPGPRPGATSALDTDQPLAGGAAGLIEAAPEMAKEALSSLASVGNSAFHTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACASSRQVLLAPRPDWCDCEPAPDPRDVVWKNIAVPQP 582
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.780e-57
Identity = 120/262 (45.80%), Postives = 164/262 (62.60%), Query Frame = 1 
Query:  427 RGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTV-------------ASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRC 1173
            R +  L + +R+S+TGFVTF  +AA AA+ Q+L+  RP  C    AP+PRDVVWKN A+            Q  LR  +A  L+A GAI WS+P+  +Q W S  QL K  P L  L+ D +LY +++GYLPV++L     LLP +F   +A  YE RK+ S+VQ ++++R+F YQ+ANIY+TV             ASG+I+ A Q I+D+P  V  ILG T P+VAVYF+++++VK   GLP EL R WPLI V WSQRC
Sbjct:  577 RSIAGLAIPERVSSTGFVTFNTLAAKAAASQLLVTHRPRTCRTYPAPEPRDVVWKNAAVPA---------GQVALRGIIANVLLAFGAILWSVPITALQAWTSMDQLSKWIPALDSLNHDGYLYTLVSGYLPVLVLLILIMLLPVIFTM-IAQGYELRKTISDVQASVMSRFFYYQLANIYITVSAAXXXXXXLSLVASGTILEAFQSIVDNPKEVATILGTTLPSVAVYFVNLVLVKTLSGLPMELSRLWPLITVTWSQRC 828
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A7S4V0U0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0U0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.150e-40
Identity = 102/270 (37.78%), Postives = 150/270 (55.56%), Query Frame = 1 
Query:  403 FHTTRRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKI--FPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREI 1206
            F T  R    V+   +G  MST GFVTF  +++   S    L  +P+  +   AP+ RD++WKN  +    +           R  +A  L++ GAI WSIP+ +IQ  A+   L +I     +   D  + L  +I GYLPVV L     +LP +FQ   A  YE RK+ S+VQ +I+ RYF YQ+ANIY+TV +GSI ++L +ILD P+A+L ILG   P V  YF+ +++ K+  GLP  +LR   L R+L+ + C      T+RE+
Sbjct:  194 FKTLNRQLDDVVESAVGATMSTVGFVTFIDLSSVTCSCGAFLTHKPNVLEVQVAPETRDIIWKNAHIDKGVI---------QGRAFLANVLLSLGAILWSIPLAMIQALATADSLARIPGMEWILSFDEGT-LRGLINGYLPVVALLSLIVILPIIFQWV-AVHYEGRKTLSDVQASIMGRYFYYQLANIYITVTAGSIYNSLADILDRPSAILEILGTKLPTVVGYFISLLITKILAGLPVIILRFGALSRMLFLKACFRERKMTQREL 452
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A7S2NWW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWW9_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.510e-40
Identity = 93/255 (36.47%), Postives = 142/255 (55.69%), Query Frame = 1 
Query:  448 LGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYV--IAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREI 1206
            +G+ M++TGFV+F  + +   +    L  +P+      +P+PRD++WKNI             +    R++ A + +A GAI WSIP+  IQ  A+   L ++ P ++ L   S L     I GYLPVV L     +LP +F+   A  YE RK++S+VQ +IL RYF YQ+ANI++TV +GSI  +L ++L  P +   ILG + P V  YF+  +  K   GLP  LLR  PL ++L+ + C      T+RE+
Sbjct:   65 IGRTMASTGFVSFTDLPSVCYAASAPLCHQPEMLQTSLSPEPRDIIWKNIQGN---------INLVKQREDAANFFLALGAILWSIPLTAIQALATAESLSRV-PFMSWLSTSSNLRLTAFINGYLPVVALLTLIMILPIIFEWV-AVNYENRKTYSDVQNSILNRYFYYQLANIFITVTAGSIWDSLNDLLYSPYSAFVILGRSLPTVVGYFVSFLATKTLAGLPMVLLRLGPLGKMLFYRLCLRESKLTQREL 308
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A813JQU3_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JQU3_POLGL)

HSP 1 Score: 158 bits (399), Expect = 1.920e-40
Identity = 96/242 (39.67%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:  415 RRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGW 1140
            R  A+ +   T+G+  S+T FVT R +     ++QV+L    +W     A +PRD++W N+              Q ++R ++A      G +FWS+PV LIQ WAS   L+K FP +  L     LY  +  YLP V L     LLP +F+  +A R+E  K+ SEVQ+ +L R F+YQ+A++YVTV SGS+  +LQ ILD P  VL IL ++ P VAVYFL  ++ +   GLP  LLR W
Sbjct:   82 RNAAQALQDATVGRTASSTAFVTLRSIGRSTEAQQVVLGHEGNW-RVRGAAEPRDLLWCNVWKP---------LQQVEMRHSLALVACTFGLLFWSVPVTLIQAWASIGMLKKWFPAVERLQAIPNLYSFLTNYLPAVALIGLQALLPSVFE-GMASRWEGHKTKSEVQRVVLNRCFSYQLASLYVTVLSGSLWDSLQSILDHPGNVLGILSQSLPKVAVYFLTFVLARACSGLPILLLRPW 312
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: B8C4F1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4F1_THAPS)

HSP 1 Score: 161 bits (407), Expect = 9.460e-40
Identity = 98/255 (38.43%), Postives = 147/255 (57.65%), Query Frame = 1 
Query:  448 LGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKI--FPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREI 1206
            +G  MS+TGF+TFR +     + +  L  +PD      AP+PRD++W+N  +             +  R+  A  L+  GAI WSIPV +IQ  A+  Q+  +     ++ L+  +   +V  GYLPVVLL     +LPFLF   +A  YE RK+ S+VQ++I+ RYF YQ+ANIY+TV +GSI+ +L EI + P+ V  ILG++ P V  YF   I+ K+F GLP  LLR  PL R+++ +      + T+ E+
Sbjct:  377 VGATMSSTGFITFRDLQTVTCAVKTPLFDKPDVLVVSMAPEPRDIIWENCHVN---------LGWSKGREWTANMLLGLGAILWSIPVAIIQALATADQIATVPGMAWISTLNGGAVAGFV-NGYLPVVLLLTIIMVLPFLFY-VVALHYEDRKTQSDVQKSIIGRYFYYQLANIYITVTAGSILESLGEIAEHPSNVFAILGKSLPNVVGYFATFIMTKVFAGLPLILLRVGPLFRMIFIKLLFREKYLTQSEM 620
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A7S3MIQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIQ7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.970e-39
Identity = 104/292 (35.62%), Postives = 161/292 (55.14%), Query Frame = 1 
Query:  373 SSLASVGNSAFHTTRRVARGVL-----------YLTLGQ--RMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREIR 1209
            S L  +G     T    A+G L            LT G   R+STT FVTF+   A A+  Q+LL+      +  +AP+P  +VW+N+++           SQ ++R+++A   +  GA+FWSI V  I   ++   + ++ P L     ++ LY +   YL ++LLXXXX LLPF+F     Y YE  K+  ++Q +I+TRYF YQ+ANIYV+V  GS+ S+L E+L +P  +L ILG   P  + YF  +++VK    +P E+LR +PL+ +L    C ++   T RE+R
Sbjct:  503 SGLEGIGKEGVKTAEFAAKGALRGVLEATRALELLTFGAQYRVSTTAFVTFKTRKAAASCHQMLLSHEYYTMEVKSAPNPSSLVWENVSIP---------LSQINIRRSIADGTLIVGALFWSIVVTAISAVSNMQSISRVIPSLQQYS-ETQLYQIANNYLALLLLXXXXALLPFVFDFIARY-YEGLKTEIDIQNSIMTRYFYYQLANIYVSVGLGSVASSLHEVLANPANLLTILGAAVPTFSTYFACLVIVKTMTAVPIEMLRIFPLLDILSVSLCMDKRRCTRRELR 783
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A7S4VLS2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VLS2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.530e-39
Identity = 97/255 (38.04%), Postives = 144/255 (56.47%), Query Frame = 1 
Query:  448 LGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKI--FPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATEREI 1206
            +G  MS+TGFVTF  +       +  L+  P   + + APDPRD+ W+N  +           S +  R+  A   +  GAI WS+PV  IQ WA+   L  I  F  +   D   F  +V  GYLPVV L     +LP +F+  +A  YE RK++S+V+++ILTRYF YQ+ANIY+TV +GSI ++L +ILD P  V  ILG++ P V  YF+ +++ K+  GLP  +LR   L R+L+ +      + T+ E+
Sbjct:  683 VGTTMSSTGFVTFTDLQTVTCGAKAPLSDDPRVLEANIAPDPRDIKWENAHINR---------SWSAGREWTANVALGVGAILWSVPVAAIQAWATADSLASIPGFEWIMSFDGGEFASFV-NGYLPVVALLCIILILPIIFEW-IAVHYENRKTYSDVEKSILTRYFYYQLANIYITVTAGSIWTSLSDILDHPGNVFAILGKSLPTVVGYFVALLLTKILAGLPLVMLRFGALGRILFLKIFFKTKYLTQSEL 926
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BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Match: A0A813JG33_POLGL (Hypothetical protein n=4 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JG33_POLGL)

HSP 1 Score: 158 bits (399), Expect = 6.600e-39
Identity = 96/242 (39.67%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:  415 RRVARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIALTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLEKIFPILADLDPDSFLYYVIAGYLPVVLLXXXXXLLPFLFQQALAYRYERRKSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILGETFPAVAVYFLDVIVVKLFVGLPFELLRGW 1140
            R  A+ +   T+G+  S+T FVT R +     ++QV+L    +W     A +PRD++W N+              Q ++R ++A      G +FWS+PV LIQ WAS   L+K FP +  L     LY  +  YLP V L     LLP +F+  +A R+E  K+ SEVQ+ +L R F+YQ+A++YVTV SGS+  +LQ ILD P  VL IL ++ P VAVYFL  ++ +   GLP  LLR W
Sbjct:  299 RNAAQALQDATVGRTASSTAFVTLRSIGRSTEAQQVVLGHEGNW-RVRGAAEPRDLLWCNVWKP---------LQQVEMRHSLALVACTFGLLFWSVPVTLIQAWASIGMLKKWFPAVERLQAIPNLYSFLTNYLPAVALIGLQALLPSVFE-GMASRWEGHKTKSEVQRVVLNRCFSYQLASLYVTVLSGSLWDSLQSILDHPGNVLGILSQSLPKVAVYFLTFVLARACSGLPILLLRPW 529
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8260.19608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGF9_ECTSI2.670e-23490.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF22_9PHAE1.260e-10990.29ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZAA7_9STRA1.780e-5745.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4V0U0_9STRA1.150e-4037.78Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2NWW9_9STRA1.510e-4036.47Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A813JQU3_POLGL1.920e-4039.67Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
B8C4F1_THAPS9.460e-4038.43Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3MIQ7_9STRA1.970e-3935.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4VLS2_9STRA3.530e-3938.04Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A813JG33_POLGL6.600e-3939.67Hypothetical protein n=4 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8260contigEcto-sp13_S_contig8260:3..6814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score677.6
Seed ortholog evalue3.7e-192
Seed eggNOG ortholog2880.D8LGF9
Model size1212
Hectar predicted targeting categoryother localisation
Exons11
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
Cds size1212
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8260.19608.1prot_Ecto-sp13_S_contig8260.19608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8260 3..6814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.6797476-CDS-Ecto-sp13_S_contig8260:2..1351681464095.6797476-CDS-Ecto-sp13_S_contig8260:2..135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 3..135 +
1681464095.6939213-CDS-Ecto-sp13_S_contig8260:526..7561681464095.6939213-CDS-Ecto-sp13_S_contig8260:526..756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 527..756 +
1681464095.7098017-CDS-Ecto-sp13_S_contig8260:1599..17551681464095.7098017-CDS-Ecto-sp13_S_contig8260:1599..1755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 1600..1755 +
1681464095.724364-CDS-Ecto-sp13_S_contig8260:2168..22491681464095.724364-CDS-Ecto-sp13_S_contig8260:2168..2249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 2169..2249 +
1681464095.7363276-CDS-Ecto-sp13_S_contig8260:2858..29811681464095.7363276-CDS-Ecto-sp13_S_contig8260:2858..2981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 2859..2981 +
1681464095.746854-CDS-Ecto-sp13_S_contig8260:3695..37601681464095.746854-CDS-Ecto-sp13_S_contig8260:3695..3760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 3696..3760 +
1681464095.7574236-CDS-Ecto-sp13_S_contig8260:4483..45651681464095.7574236-CDS-Ecto-sp13_S_contig8260:4483..4565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 4484..4565 +
1681464095.7677689-CDS-Ecto-sp13_S_contig8260:4965..50491681464095.7677689-CDS-Ecto-sp13_S_contig8260:4965..5049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 4966..5049 +
1681464095.777752-CDS-Ecto-sp13_S_contig8260:5478..55561681464095.777752-CDS-Ecto-sp13_S_contig8260:5478..5556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 5479..5556 +
1681464095.7881563-CDS-Ecto-sp13_S_contig8260:5899..59921681464095.7881563-CDS-Ecto-sp13_S_contig8260:5899..5992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 5900..5992 +
1681464095.7985513-CDS-Ecto-sp13_S_contig8260:6727..68141681464095.7985513-CDS-Ecto-sp13_S_contig8260:6727..6814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8260 6728..6814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8260.19608.1

>prot_Ecto-sp13_S_contig8260.19608.1 ID=prot_Ecto-sp13_S_contig8260.19608.1|Name=mRNA_Ecto-sp13_S_contig8260.19608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
ESKAASLDQVDCFLRTKSQKESEWAMQEVDDVSDVSPSSRRVDEGRTGSS
SLDVEGGGAAESASGIEEELEARRRRSTNRSPSSGGDAFGLRPGATSALD
TDQPLAGGAAGLIEAAPDMAKEALSSLASVGNSAFHTTRRVARGVLYLTL
GQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCDTAPDPRDVVWKNIA
LTPPSLPTCFLFSQNDLRQNVAAWLVAAGAIFWSIPVLLIQFWASYSQLE
KIFPILADLDPDSFLYYVIAGYLPVVLLLLLMMLLPFLFQQALAYRYERR
KSHSEVQQTILTRYFTYQVANIYVTVASGSIISALQEILDDPTAVLNILG
ETFPAVAVYFLDVIVVKLFVGLPFELLRGWPLIRVLWSQRCTNRDFATER
EIR*
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mRNA from alignment at Ecto-sp13_S_contig8260:3..6814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8260.19608.1 ID=mRNA_Ecto-sp13_S_contig8260.19608.1|Name=mRNA_Ecto-sp13_S_contig8260.19608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6812bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8260:3..6814+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGCAAGGCGGCGTCCTTGGATCAGGTCGACTGTTTTCTAAGGACCAA
GTCGCAGAAAGAGTCTGAGTGGGCCATGCAGGAAGTGGACGACGTTTCGG
ACGTGTCGCCTTCCTCGCGAAGGGTTGACGAGGGTGCGTGTTTCCTTTGC
AGCTTTTGTTGGGTTCTTTCCCGCGAAACGACAGCGGTACAAGTGGAAGT
TTTGTCTTCGTCTTGGTCGTCGTAGGGCCTCTGTATCTGTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTTGTTCTTGTTTTTGTTGCCCGCTGCTG
CTCCTGCTGCTGTTGTTGTCATTGCGTGATTCCCTTTCTTGATGTTGCTT
CTGTCGGAGAGTTCAGGGGCAAGGTCGGGTGACAAAAACACGCTCCTTTT
CCCGCGCGAGTCGGAAAACGAGTCCTCGCTTCGTTGTTACTTGTCAGGAG
GGGGGGGGCTCACACGAACCTACTCCATTCTCCGTGGTTCCCGTACTCGC
CCCTTTTTCATTCATCGCTGCCAGGGCGGACGGGGTCGTCGAGCCTGGAC
GTCGAGGGGGGGGGCGCCGCCGAATCAGCAAGCGGCATTGAAGAGGAGCT
GGAGGCGAGGAGGAGACGTTCCACGAACCGTTCTCCGAGCTCCGGCGGCG
ACGCCTTCGGCCTTCGCCCCGGAGCCACGTCCGCCCTGGACACGGACCAG
CCGCTTGCTGGCGGGGCGGCGGGCCTGATCGAGGCCGCCCCTGACATGGC
GAAGGTGTGGCGGCACCCCCTTCCCCGGGGGACATGCGTTGGTGTTGATA
TGCGTATCATAAGACCAGATAGGCTGCACGAGTAGACGATGGTCAAGGCC
TAGATGGAAATGCGTTGGTTTTGATATTCGTAGGACCGGATAGACAGTAG
ATGATGGTCGAGGTCGAGATGGGAATGCGTTAGTGTTGAAAGGTGTAGGA
CTCTGATAGACAGAAGACGATGTTGAAGGCCTAGATGGGAATGCATTGGT
GTTGATATGCGTAGGACCAGATAGACAGTAGATGATGGTGAAGGCCTAGA
TGGGAGTGCGTTAGTGTTGATATGCGTAGGACCGGATAGACTGTATTTCG
ATATTGCTTGCTGCGGCCGTGATGACCCGCTGGTGGGCAGGAGATGGGGC
GTGAAGGGTAGAGCAGGAAGAGGATTGCTATTGTTGAAGGAGGATTGATG
CCGTGCGTGGTGGCCAACATGCTCGTGTGGCATAGAAGTCTGCCCATTTG
TACACCCGTGTATTAAAGGTTTTGTTGGGGGTGAAACGGCATCACGACGG
AGTGCGAAGAACAAGAAAGAGACATGTGTTTTTTCCGTGGCAGACTACGT
TGTGTGTGAGAACATGGGGTTGCGGATTCGACAAAAATCTACTTCGTGCC
CAGAGCCGGTCTTACAGCCCCTTTCAGGTGTCGTAGTGCTCTCTCCTTCT
GGTTGCGGCTACCCCCTCCCGGTCGTTCCACGCTTGTCTCCATTTCCCAT
ATTTTCCCTTCTCTCTCTCTCCCTCCCTCCTTCCCTCCCTTCCCCCCTCC
CTCCCTCCCATCCTGCTTTTGTCCTCCCTCCCTTCCCTTTCCCGCAGGAA
GCACTGTCTTCCCTCGCGTCCGTGGGCAACTCCGCCTTCCACACCACCAG
GAGGGTCGCTCGCGGTGTCCTGTACCTCACCCTAGGCCAGCGCATGAGTA
CCACCGGCTTCGTCACCTTCCGGCAAATGGCGGCTTGCGCGGCTTCTAGA
CAGGTGGGGGGTAGGGAAGGGGGGACGGTGGAGTGTGTGTTCTGCGTGTT
GGTGGGGGTGGGTGGTGGGGTATGACGGGTGCGACGAAAGGGAGTGGGTG
TAGGGCGAGTTGTTGCGACAGTATCGGGCGTTGCATAACAGGAAGTCTAG
GAGTGGATATGATATATCTGAACGTATGTGGTCGCTGCCGGTTGTAAAAT
GCCCCCCCTCCTCTCCTTGTCTATTTGCCGAATCGCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTTTGGCCCTTTGTGTTCCGTCGCTGCCGCACCTCTT
TTTATCTCTGTCCGCTCTCCCTCTCTCTTCTTCGGCTCTCCCGCCGCATC
CTTTTTACGTGCCTGCCGACGCCGCCCGACCAACCGGGTACAAAACATCG
CCCCGGGTCAAAACAGGTGCTGCTGGCGCCTCGGCCAGACTGGTGCGACT
GCGACACTGCGCCGGACCCGCGAGACGTGGTGTGGAAGAACATTGCGGTG
CCCCAATCCCAGGCACGAAGTTACTATCGCTGTTCTCATTGTTTGTGGTG
TTGATGTTGCGGCTGCTGTCACCTGTTGCTGTTGCTGTTGTCGCACTAGG
TGTTCTTAGAAAAGTATTGTTTCTGTTTATTTATTGTGCTTAAGTTATAT
TGCTGCTGGTACTAATGCTGTTGCTGTTGTCGATCTATGCGTCTGGTGGG
TGTTGGCGGTGTTCTGTCGTATATGTTGTATGTGAACGTCTTTCGATACC
GCGTTTGATGAGAAAAGAGTGAACCAATCTCCTCCCTTCACAAGCGGTGC
TGGTACCAAACAGCAGTGTTTGGCCGTCCCCCCAAGAGCGTTGTGATCGT
CATTGAAAGCGAGGGATTTGCACCGTGAATGGTCAGGTCATCAACCCCCC
CTAGCACATCTCAGGCAAGGAAAATACGAAAGTTCGTACTGCGCACATGA
CTTTGAACACCCTTCGTGTTGGCCAGGTCAAGTGTCGCGTGTCTGCTGAA
TGCTCGGAAAGATGGATATCGCCCTGAACTCGTCTGTGTGTGCTTGTCGC
ATCTGGCCCATCTGTCGCCTTTTCCCTTTCAAGACACTGAGGCTGTGACT
AGTCAGCTAACCCCCCCGTCCCTCCCGACCTGCTTCCTCTTCTCTCAGAA
CGACCTCAGACAGAACGTGGCTGCGTGGTTAGTGGCCGCGGGGGCCATCT
TCTGGTCTATCCCGGTCCTTCTTATCCAAGTGCGTTCCGGCTTTCCTTTC
GTTGTTGTTCTTGTTGTTGGTTGTAGTTTGTGTCGGGGGGTGTTCGCGTC
GTTGGACAGGTGTCGTCGTGGTCATTGTGGTTGTTTTTGTTGTTTTCGTT
GTCGTCATGACTGCAGTCTTCTCGACACTTCAGACCCCACCCGCCGTTCC
CTCCTGTGCGGGACACTCCAAGGCGGCTCGATTCCGCCTCTCCAGTCCTT
TTCCCAGGCGTCGTCTTGCTCTTGGCCGGTGCACTGCTGGTTTCTTACCC
CTGTGCCCCTCGTGGGCCAATTTTCCTCTTCTCCGAGACCGACTAATGTT
GTAGCAATTGCTCTCTTGCTGCTGCCGCTCTTCATTGCCTCTACATGCTT
CGCTGTCTCGGGATTCCCTCATACGTACATACACCAAACTAGCTCTGACT
GTTCGTCTTGTCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCTCCCC
CCCCCCCCCCCCCCCTTCTTTCTTCCCNNNNNNNNNNTTCATTTCCCTCT
CCTTCTTCCCTTTCTTGGGGTTCCCCCCTACCTACATACCCCCAACCAAC
CCTTTCTGTTCTTTTTTTCCCCCCCCCCCCCCCCCTCCTTTTCGTCCCCC
TCTGTTGGCGTCACCTCTGTCTCTCTGTCTCTCTCTCTGATTGTCTGTCT
GTTTGTCTCTCTCTTTCTTCTGTCTCCCTCTTGTGCGGTGTAGTTTTGGG
CATCTTACAGCCAGCTCGAGAAGATCTTCCCGATACTGGCCGACCTTGAC
CCGGACAGGTTCGTTCGTTTGCGGCCCTAAGTATCCCCACTTCACGCCCC
ACCACAAGCGATTTCAGCAAATAGCGGTGTGTACCGGGCACGCGACCAAA
AATGAATCTGGTATCGCTCCCGAAAATGCCGCGTGTTGTGCACCGAGCTG
CTCCGATCTCACAGTAGCACTCGCGAAACTAGCGCGCTTGTCTAGCGACT
TGTGATTGCAGGATGTAGCTGTCGTTTTGCGGTCGTCGTTGTTGGCGATG
TTTGGTGTGCTGGTGATGGTTTTGTCTTCATATCGCACGGACGTTTTTGT
TTTTGTAGACCTCTTGTGCGGTTCGTGTTGGTGTGCTTGTGTCTCGGCCA
CCCTTTACTTGTCTCAGTCAGTATCTCGGTACATACACTCGTGGGGCCGC
ACACAGGAGTAGCGAAGGTGCCTGCTATGGCGGGCAGGAGTTAAATAGTG
TATGTTGAGGAAGGGTTACATCCAAACGCGGACGAACCTTAAATCTCCCG
TACGGCCAACGTTTGCGAGCATCGCGCCGCCACACAGCGTTGTCTGGCGT
TTCCATCTTCACCTCTTTCTGTGATTTTGTGAGTTAAATCTGTCTGACGC
CACCTCTCCCTTCCATGCCTACTCTGGTCTTCCCACTCACGGAGCTGTCA
CTTACATATTTGTTCTCATCCTCGCTGTCGCGCACGCTGCTGATGTGATT
CGTCTGTGTCTGTACGTTCATGCCGAGGCAGCTTCCTGTACTACGTGATT
GCGGGCTACCTTCCGGTCGTCCTGCTGCTGCTGCTGATGATGTTGCTACC
GTTCCTTTTCCAGGTGACCGCTTGGTTCGGAACGCCGTCGGGGTTTCACG
AAATGAAAATCGGGTAGATGAGTGTTGTTTGTAGTTACTACTTGCTCTTT
GTTGGCGTTGCTTCCGCGGGAGAAAGCTACTGATTCGGCTCCCCGTCGGC
GCGCTTACCCTTCCGGCCATATGTCCCTACGAATTCACCCCTCCAATGGT
CTTTTAACTGTACGGCATGCACGGCTATTAGTACCCCCCCCCCCCCCCTT
CCCTCTATCAGCCAGCTTCACAGTAGAGCCCAGTTCGGTGACGTGCTGCG
TTTCGCATGGTCGTCGTCCGCAACTTGACGCCAAACCACCCCTATTACTA
CCTTGTTCTTCCGTTTTGCCGTCCGCGTGGCGCGACCCCTTGGCTCCATG
TCTCTTTCGGGAGCAGGCCTTGGCCTACCGTTACGAGCGCCGCAAGTCTC
ACAGCGAGGTGCAGCAGACGATTCTGACGCGCTACTTCACGTACCAGGTA
CAATACATCGATGGATCCAGCCTCTGCCGCCGCTGTCGCCCGTGGCATCG
ATCGAATCGGATTCGTTTTTCGTTTGTTGAAGAGTTTTGATCCCCTGTTG
TTGTTGTTGTTGTTGTTGTCCGAGTCAGCCTCGAGAGCGAAAAGAGGAAA
TGTCTAGGCCAGCCGTGCGCATGTCGATCGGACATGTGTTCTTGTCAGAT
TCGTCCGCGTGCACGCCGCACCAGGGTTGCTTTCTGAGCCTCCTGCCTCC
CAACCCTTAACCGGTGGTCACGCTCGTCTCTTATGTTTTTTGTCTGTTAA
AACACGATGAAGGTTCGAAACAACTCCTCTCCGTCCCACTCCTACGTTTT
CCCGCGAGCTTCTCAACAGCTGACCTCTCGCGCTGTTGGTCGTTTTGTGT
TTTGTGCTTGTGTCGCCGATGAACAGGTTGCGAACATCTACGTTACCGTG
GCATCCGGATCCATCATCTCGGCCCTCCAGGAGATCCTCGACGACCCCAC
CGCGGTGAGAGTCCCTCTGCTTTGACGTCACGGAACCCCTCGTGCATCTG
CCAAACCCCGACGAATCGATTGATTGGGCGGGCAAGAAGTTGGACACACT
CCGTAGCTACAACTTCTCCGCGTGTTTGTTGCCAAGGACATGTTACCATT
GCATCATCGGGTAAGAGAGCCTTTGAAGAGGGGGGGGGACTCGGCGTGTT
CGTGGGATATGAAGCCTCCGAATGGCACAAGCAGAGAACAAGCAATTCCC
ACTTGATTGCACAACACCCAAGGTCAACAACGACAAAACCACATGACTTC
TGTCTCAGCATGAATAGTCGTCCTAACCGATCTCGTCTGTACACCAGGTG
CTGAACATCCTCGGCGAGACTTTCCCCGCCGTGGCGGTGTACTTTTTGGA
TGTGATCGTCGTCAAGCTTTTCGTCGGGCTACCGTTTGAGGTGACAAGGG
GCGAGTTGGAAGGCACCTAGCCAGGGAACGTCCCGATGCGACTGGCGGTC
GAATTGTTCCGCCGTGCGCAGCCTCAAACTTCGCTCCTCCGACTCTGTGG
GGCGTCCATGAAAGACAGGCCGGCGTGCATCAACACCCCATGATTTTTTT
TTTTTGCTCTTTTTTTGGCTGTATTCTTTTACCGGTACCTTTATCGACTG
CGTGCGATTACTACTGCTGTCTTTGTTCTCGTGTTAAGTGGGAAACCGTT
ATTTTTTCTTTGTTCTTCGCACGCGGAGATAAGGGGGGGGGCAGCGTCCT
CTTGTCTCTTGTTTTTCACGTGGAGTGTTCCGCTGAAAGCGGGAGTCGGC
AGTAGAGGCGATTGTTTCAAGAGCAGACGCGCATGGCCGAGAGGAATGCA
GGCGACCAAATTGTCTTTTCGATTTACTAGCGCCGGTAAAACGCCCTTGG
GGCCAAAACAGCTTTTATTTCGCGAGTTTGCCCGGTCCAGCGGAAACGCA
GAGTTGGCGAACCGTGGTGTGAACCATAAAACACGATCTTTTGACGGGTT
AACCTGGTTCATTTCGAACGGGAGAAGTCTGGTCGACAGGCTTTGAACAT
GCCCGTCACAAGGACGGTATATGTATCATCAGACCACCTTAGATTTCGTA
CTTCTTCCTCTCATGGATGCATGACCCTTGCCTTCCCCCTTGGGTTGATG
TCGTTCACCATTTTTTTTTTGACAGCTCCTTCGAGGGTGGCCTCTGATTC
GGGTGCTGTGGTCGCAGCGATGCACCAACCGGGACTTCGCCACGGAGAGA
GAGATCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8260:3..6814+

>mRNA_Ecto-sp13_S_contig8260.19608.1 ID=mRNA_Ecto-sp13_S_contig8260.19608.1|Name=mRNA_Ecto-sp13_S_contig8260.19608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8260:3..6814+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGCAAGGCGGCGTCCTTGGATCAGGTCGACTGTTTTCTAAGGACCAA
GTCGCAGAAAGAGTCTGAGTGGGCCATGCAGGAAGTGGACGACGTTTCGG
ACGTGTCGCCTTCCTCGCGAAGGGTTGACGAGGGGCGGACGGGGTCGTCG
AGCCTGGACGTCGAGGGGGGGGGCGCCGCCGAATCAGCAAGCGGCATTGA
AGAGGAGCTGGAGGCGAGGAGGAGACGTTCCACGAACCGTTCTCCGAGCT
CCGGCGGCGACGCCTTCGGCCTTCGCCCCGGAGCCACGTCCGCCCTGGAC
ACGGACCAGCCGCTTGCTGGCGGGGCGGCGGGCCTGATCGAGGCCGCCCC
TGACATGGCGAAGGAAGCACTGTCTTCCCTCGCGTCCGTGGGCAACTCCG
CCTTCCACACCACCAGGAGGGTCGCTCGCGGTGTCCTGTACCTCACCCTA
GGCCAGCGCATGAGTACCACCGGCTTCGTCACCTTCCGGCAAATGGCGGC
TTGCGCGGCTTCTAGACAGGTGCTGCTGGCGCCTCGGCCAGACTGGTGCG
ACTGCGACACTGCGCCGGACCCGCGAGACGTGGTGTGGAAGAACATTGCG
CTAACCCCCCCGTCCCTCCCGACCTGCTTCCTCTTCTCTCAGAACGACCT
CAGACAGAACGTGGCTGCGTGGTTAGTGGCCGCGGGGGCCATCTTCTGGT
CTATCCCGGTCCTTCTTATCCAATTTTGGGCATCTTACAGCCAGCTCGAG
AAGATCTTCCCGATACTGGCCGACCTTGACCCGGACAGCTTCCTGTACTA
CGTGATTGCGGGCTACCTTCCGGTCGTCCTGCTGCTGCTGCTGATGATGT
TGCTACCGTTCCTTTTCCAGCAGGCCTTGGCCTACCGTTACGAGCGCCGC
AAGTCTCACAGCGAGGTGCAGCAGACGATTCTGACGCGCTACTTCACGTA
CCAGGTTGCGAACATCTACGTTACCGTGGCATCCGGATCCATCATCTCGG
CCCTCCAGGAGATCCTCGACGACCCCACCGCGGTGCTGAACATCCTCGGC
GAGACTTTCCCCGCCGTGGCGGTGTACTTTTTGGATGTGATCGTCGTCAA
GCTTTTCGTCGGGCTACCGTTTGAGCTCCTTCGAGGGTGGCCTCTGATTC
GGGTGCTGTGGTCGCAGCGATGCACCAACCGGGACTTCGCCACGGAGAGA
GAGATCAGGTAG
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