mRNA_Ecto-sp13_S_contig8259.19607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8259.19607.1
Unique NamemRNA_Ecto-sp13_S_contig8259.19607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8259.19607.1 vs. uniprot
Match: A0A6H5KAV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV9_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.940e-66
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:  160 MKTREMEKALKRERVSNCRLRHCELKQSTGRSHDGESVPAPAASRDRCVAVDGILSRPSFGPNLCAGCGSGKGSGVRGEKAEGTEELRVVERLVAGLLEQSLRPRFAVRHSEAAGSHSPTRSCEGESNDIAISTSA 567
            MK REMEKA +RER SN RLRH +L +STGRS DGES+PAPAASRDRCVAVDG+LSRPSFGPNLCAGCGSG GSGVRGEKAEG EELRVVERLVAGLLEQSLRP FAVRHS+AAGSH PTRSCEGESN+ AIST A
Sbjct:    1 MKNREMEKAHERERASNSRLRHRDLNRSTGRSDDGESIPAPAASRDRCVAVDGVLSRPSFGPNLCAGCGSGNGSGVRGEKAEGAEELRVVERLVAGLLEQSLRPGFAVRHSQAAGSHLPTRSCEGESNERAISTCA 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8259.19607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAV9_9PHAE1.940e-6685.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8259contigEcto-sp13_S_contig8259:2811..6973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2102
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_001400.1
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8259.19607.1prot_Ecto-sp13_S_contig8259.19607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8259 3863..6311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.5604794-UTR-Ecto-sp13_S_contig8259:2810..38621681464095.5604794-UTR-Ecto-sp13_S_contig8259:2810..3862Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8259 2811..3862 -
1681464095.6258726-UTR-Ecto-sp13_S_contig8259:6311..63621681464095.6258726-UTR-Ecto-sp13_S_contig8259:6311..6362Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8259 6312..6362 -
1681464095.6361976-UTR-Ecto-sp13_S_contig8259:6865..69731681464095.6361976-UTR-Ecto-sp13_S_contig8259:6865..6973Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8259 6866..6973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.5726383-CDS-Ecto-sp13_S_contig8259:3862..39681681464095.5726383-CDS-Ecto-sp13_S_contig8259:3862..3968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8259 3863..3968 -
1681464095.5838904-CDS-Ecto-sp13_S_contig8259:4185..42361681464095.5838904-CDS-Ecto-sp13_S_contig8259:4185..4236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8259 4186..4236 -
1681464095.5953455-CDS-Ecto-sp13_S_contig8259:5119..54511681464095.5953455-CDS-Ecto-sp13_S_contig8259:5119..5451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8259 5120..5451 -
1681464095.6074674-CDS-Ecto-sp13_S_contig8259:5677..60441681464095.6074674-CDS-Ecto-sp13_S_contig8259:5677..6044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8259 5678..6044 -
1681464095.6168025-CDS-Ecto-sp13_S_contig8259:6276..63111681464095.6168025-CDS-Ecto-sp13_S_contig8259:6276..6311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8259 6277..6311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8259.19607.1

>prot_Ecto-sp13_S_contig8259.19607.1 ID=prot_Ecto-sp13_S_contig8259.19607.1|Name=mRNA_Ecto-sp13_S_contig8259.19607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MKTREMEKALKRERVSNCRLRHCELKQSTGRSHDGESVPAPAASRDRCVA
VDGILSRPSFGPNLCAGCGSGKGSGVRGEKAEGTEELRVVERLVAGLLEQ
SLRPRFAVRHSEAAGSHSPTRSCEGESNDIAISTSAPSDAGCSRKEEEQQ
QQRNAVSAAGGTKADAARTPDAELRSENLRDGRLQEADSNQKKTVNVELA
LSRIHALTAMMRAQEEIETLLGQQLGELKHKQADESKRMWQLVTRWNRVL
KKKGYAAEEDIRSAGLLEELRQRLPAAEDLQPQGSLDREEIVLSLP*
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mRNA from alignment at Ecto-sp13_S_contig8259:2811..6973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8259.19607.1 ID=mRNA_Ecto-sp13_S_contig8259.19607.1|Name=mRNA_Ecto-sp13_S_contig8259.19607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4163bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8259:2811..6973- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCCTGTTGGATATCAAGGCAGAGCATGAGCATATCGTGAGGGAGGT
AACCTCACGCGCGACGAGAGAAGAGCGACGAAGGACGATCTGCGAGAAAC
GAGTACAGGTGATAGATAGGAAGCCTGGTGGCCGGCGATCGCTTGGCTGG
CCGTGTTTATTAAGTACACATCATAGGTCGAACTGAAGCACGTACTCTAA
CGTTTTGCTTTCTAAACAAACCTGAAATATGATAAATGCGTGTGTTGTGG
TGACTGCAAGAAGAGCGCCGGGTGTATGTATGTTCCATGTTTTCCGGACG
TGCATGTCTCTGGCTTGACCATCAGTATTATTAGCAGTAGCACACACCGC
ATGTGCACAGACAGGGGGATAAACTCACGCGGTCAGGTGGTGGGAAATTT
CCATTCCGGTTTCCAGTCCGAGCAACCCCACCCGGGTAGCCTTTATTAGT
TCGGTCGGCGATACAGTTGGCTGATTTTTGACACTGTGAACAGGGCTTGC
CCTACATTCCAACATTTCTCCGCCGGCACGCTTTACGCAGCCGGTGTGCA
CCCCGGCACCGCCTCCACTCCAAGCACTATCTATCTTGATTTCTATCCGC
GTGCGTTCCAGGACCTTGAGGGTGAGGTTCTGCTCCTGAAGCAACAGCTT
CAGGTTGCAGCGATGAAAACTAGGGAAATGGAGAAAGCGCTTAAAAGGTG
CGCATGCCTGCGGCGTCATCCCTGGTGATGTGGCACTTGCCTGTCTCGAT
GTGTCCTTTGGCCGGGTGTTCTCTGAACATTCGGGCACGCCATTTATTTT
TGCTGTTGAGCTTCGGCATCGTCGAATATCACCGAACGCAGCTATGATTT
TCGGGACAGCATGTCACAACGAGTGATTGACGACGCACATGACTCAGCTT
CATGTGCTTGTGCTCGCCCGTTCAACCAGGGAGAGAGTAAGCAACTGCCG
CTTGAGGCATTGCGAATTGAAACAATCTACGGGGCGTTCACACGACGGCG
AAAGCGTACCGGCACCCGCTGCGAGCCGAGATCGATGCGTTGCTGTCGAT
GGCATATTGTCTCGACCTTCGTTTGGTCCGAATCTGTGTGCCGGCTGCGG
AAGCGGTAAAGGTTCTGGAGTACGGGGGGAGAAGGCGGAAGGGACGGAGG
AGCTGCGGGTAGTTGAGAGATTGGTGGCGGGGCTACTCGAACAGAGCTTG
AGGCCTAGGTTTGCCGTGCGACACTCCGAGGCTGCCGGATCTCATTCCCC
GACAAGGTCTTGTGAGGGAGAGAGCAACGACATAGCAATCTCCACGGTGA
GATTTGATTGCGTTGGCCCAAAACTTTACTTGTTGCGGCAGCCGCTTGGT
TTGGCATCACGAAATCCACCGCCGGATAACACTGTAATTGCGAGGCTGCC
AGCATAAGGACTCGGTCCGTAACATTAGAGGTCCCATGTGTGAGGACATG
CACAACTATACTACATTCCTAAAATTGTCATTATTTTTTCGAGCTCTCTT
TATGGAATGTTCCATCCGGCAGAGTGCGCCTAGCGATGCTGGTTGCTCGA
GAAAAGAGGAGGAACAGCAACAGCAGCGGAATGCCGTGTCGGCTGCGGGG
GGAACAAAAGCGGATGCGGCTCGAACACCGGACGCCGAACTTCGTTCCGA
GAACTTGCGAGATGGACGGCTACAGGAGGCAGACTCGAATCAAAAGAAGA
CCGTCAACGTCGAGTTGGCACTTTCAAGGATTCACGCTCTAACGGCAATG
ATGCGAGCACAGGAGGAAATTGAGACACTCCTCGGCCAACAACTTGGCGA
GCTCAAGCACAAACAAGCCGACGAGAGCAAACGCATGTGGCAGCTCGTGA
CGAGGTGATCGGTCCACTTCTTGCTGTTTGTCATGGCTGCTACCGTAGAT
TTCTCTCGAGAGTTACACGCGTTTGTTTCGCGTTAAAAAGGCAGGTCATA
ACGAAATCAAAACACGATTCATATTTTGAATGTAAGAATAACAGAGTTGG
ATTTACCCATATTCGATCGAAATGGTCTTGTTCGTCTTAACGTCAGATCT
GCCTATTGGAAACGAATCTCGGCAGCCCACCGCGAAGAACCCGAGAGGTC
CACCGCTTGCCAACAGCCAGATTACTGTTGTGACGTGTGTTGTTATGACT
TGGCCACACCACATGGGGAGCTATCGCTCCTGAGCAGCCCCAAACGCCTA
CACGGCTTTGTACTGACACGACTTGTGTGCATGCGAGACTTTGGATCGAG
CCTCGTCGCGGAAAGCGATCAATTTGTCTGTGCATTCGAGGTTTGACAAC
GACAGGAGACTCCGACAGACCACACATACCCCCCCCACGTTTTTTTCGGC
GCCAGTCACGTGCAACAACAGTACGCATTCACCCTTCCATCAATTGGGTT
AGCTTTTCGTGCTCTCTCCTTGGTGCTCGGCGGTGCGCGTCGTGGGCGCC
GTTTGTGTGGACGGGGTTGTGTAGCCACGCGCCGTGCACGCGAGTAGACC
ACTACCCGTCAAGTTGGGTTGCGACTCTCACCCAAATCGGCATTCGACGT
CATACTTTTTCTTCTACTATTTTCAAAACCCGAATTGGATTGGGGTGGAC
CGGTGGAAGAGATTTTTACCCAATCAAAGAAACATATCCTTGGTACTTGT
GGACCAAATTAATCTGGATGTGATTTCGAGATTCGAAAGTTCCGGTAAGA
CCGATCCTAACTCGCGTTATCCTTCACGTCACCGCAGGTGGAATCGTGTG
CTAAAAAAAAAAGGGTATGCTGCTGAGGAAGACATCCGGTGAGACATGTC
TGCGCAATTGCCGCTGCCATGTGAACGTAAAATAGGTGGGAATTAATATC
ATGCGTACAGTTGAAAGACATCCGGTGAGACATGACGCACTTGCTGCTGT
CATGTGAAGGTAAATAGGTGGGCATGCACATCATGGGTACAATTGTATCG
TTTTCCAGGATCATGGCGACCCAAACTATTGAATGCTTGCAACAATACCG
CGCAGGTCGGCGGGTTTGCTGGAGGAACTGCGACAACGGCTTCCGGCGGC
GGAGGATCTTCAGCCACAGGGCTCTTTAGATAGAGAAGAAATAGTCCTTA
GTTTGCCTTGACTTGTTCCACTTGGGCTTCTCTTGGGAAACTCACAAGTT
TCAAGTGCCCCAGCGGTGGAACCACCGTGTGCGCACAGCCCCAATATTGC
AACACTAGAACCAAAAAATCAGTCCCTCTCATGTTGTCTTCACATTTTCT
ATGCGTGCATGGCAGCAACAGTCAAAGCACTTACCACACACACCCAAAAT
TGAAAGCGACAGGACAATCGTTTGCGCACGATCATGGAAAATCGAAGAAA
GTAAAATGGTCCTGTTTGGCACAACGAAAGTGTGGCATGCCCACATCAGC
ACAAGACAGCGGTGGGGTTCCCTAAAAGTCGCACTTGAGGAAGGGGAAAA
CACAACCTCCGACAACAGCGTTCTCGCCGACGTCAACCAGCAAAATACAA
GACAGAGCTGCTGACTTCTGATCCACCGCAACAAAAGAAAAGGGACGCCA
AAATGTCTCAGCAGAAGGCCTGTACAACCAAGACAATTATGATGTGTGAA
CCAACGTGCTAGCTAACCAGGAGCGACGAAGGCAGGAACTAATCCAAGCA
ATTGAAGACCCCGTCCACGCGCGCGTGTGTTACGCCAGCACTGAAGCAAA
GGTACGGGGGGGTGCCTGTTTTTGAAGCGACGCGCGCGCGGCGGCGAATA
GGGGAGTGGGCGTGTGAGATGTTGAGAATATAGCTAGTATCGAACCGACC
ACGCACGCGCCAACCGGTCCAACCTGAGCTTGAGAAACAATCGGAACCCG
AGATGCGATGTACATGTTTCGGACTCCGAATCGGTATCAAGCGCGAAACA
ACACAAACCACACCATATTTGCGTGGGGCTCCGAACAACTCTTGAGCTAA
GGCGTCTCCTCGTAACTACCTGGTACACTACTACGTACGAACTTCGCAAC
TCCGCACCCTGACACGGCTTCTTCGAAATGCCTGATCTACGTTTGATTCA
CGGGTGTGCGATCCATGCAAGCCAAAAACAAGAAAACGATGTCTCACCGA
GGATCTGGAAGGGTCTAATTAAAAGGTGAACACGTTGGCGACTGTGTCGC
CGAGGATCTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8259:2811..6973-

>mRNA_Ecto-sp13_S_contig8259.19607.1 ID=mRNA_Ecto-sp13_S_contig8259.19607.1|Name=mRNA_Ecto-sp13_S_contig8259.19607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8259:2811..6973- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAACTAGGGAAATGGAGAAAGCGCTTAAAAGGGAGAGAGTAAGCAA
CTGCCGCTTGAGGCATTGCGAATTGAAACAATCTACGGGGCGTTCACACG
ACGGCGAAAGCGTACCGGCACCCGCTGCGAGCCGAGATCGATGCGTTGCT
GTCGATGGCATATTGTCTCGACCTTCGTTTGGTCCGAATCTGTGTGCCGG
CTGCGGAAGCGGTAAAGGTTCTGGAGTACGGGGGGAGAAGGCGGAAGGGA
CGGAGGAGCTGCGGGTAGTTGAGAGATTGGTGGCGGGGCTACTCGAACAG
AGCTTGAGGCCTAGGTTTGCCGTGCGACACTCCGAGGCTGCCGGATCTCA
TTCCCCGACAAGGTCTTGTGAGGGAGAGAGCAACGACATAGCAATCTCCA
CGAGTGCGCCTAGCGATGCTGGTTGCTCGAGAAAAGAGGAGGAACAGCAA
CAGCAGCGGAATGCCGTGTCGGCTGCGGGGGGAACAAAAGCGGATGCGGC
TCGAACACCGGACGCCGAACTTCGTTCCGAGAACTTGCGAGATGGACGGC
TACAGGAGGCAGACTCGAATCAAAAGAAGACCGTCAACGTCGAGTTGGCA
CTTTCAAGGATTCACGCTCTAACGGCAATGATGCGAGCACAGGAGGAAAT
TGAGACACTCCTCGGCCAACAACTTGGCGAGCTCAAGCACAAACAAGCCG
ACGAGAGCAAACGCATGTGGCAGCTCGTGACGAGGTGGAATCGTGTGCTA
AAAAAAAAAGGGTATGCTGCTGAGGAAGACATCCGGTCGGCGGGTTTGCT
GGAGGAACTGCGACAACGGCTTCCGGCGGCGGAGGATCTTCAGCCACAGG
GCTCTTTAGATAGAGAAGAAATAGTCCTTAGTTTGCCTTGA
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