mRNA_Ecto-sp13_S_contig8257.19606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8257.19606.1
Unique NamemRNA_Ecto-sp13_S_contig8257.19606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8257.19606.1 vs. uniprot
Match: D7G4S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S1_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 1.470e-127
Identity = 192/194 (98.97%), Postives = 193/194 (99.48%), Query Frame = 1 
Query:    1 QATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAIDDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGSKRPGPYKQ 582
            +ATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAI DMITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGSKRPGPYKQ
Sbjct:  141 EATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAITDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGSKRPGPYKQ 334
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BLAST of mRNA_Ecto-sp13_S_contig8257.19606.1 vs. uniprot
Match: A0A835YR16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR16_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.890e-37
Identity = 85/193 (44.04%), Postives = 123/193 (63.73%), Query Frame = 1 
Query:    1 QATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDA-EGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDG---VRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAIDDM---ITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGS 558
            + T L  V +EIN+AMQRRL AAD+NLR VL  APD+KKME  +R LFR G+ +MAFMV+++MNL +A++A  GA+ AV +LTHL T IM +QD R+ PE +LLR L+R   D     R+ +L+++L L               V P  L+ AI ++    TQ+E + +  D G+T+ L+GL  E++ V+ G+
Sbjct:   23 EGTKLSAVAQEINVAMQRRLVAADANLRAVLANAPDLKKMEADLRRLFRTGQADMAFMVVLNMNLAQAREAGPGAEGAVAVLTHLNTAIMEMQDTRVAPEVRLLRMLMRASDDDNAEKRRDLLKEQLDLSGGG----GADSSGLVTPDQLRDAIRELQEQATQIEKVSKEYDTGLTEKLRGLLREIDEVLMGT 211
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BLAST of mRNA_Ecto-sp13_S_contig8257.19606.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.220e-8
Identity = 41/118 (34.75%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:    4 ATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSIL 357
            A AL  + + IN  MQRR+A A   L+++L +  + ++ME  I+ +   G+V+ A ++++  NLQ+A++A+ A  AV +L  L        DE+++PE++L+R LLR      R +IL
Sbjct:   92 AAALTRLGDSINNTMQRRMAQASERLQKILTVG-NPERMEETIKAMAERGEVDDALVLLLQANLQQAEEAD-AGPAVGVLKRLGAAAQAALDEKVDPEKRLVRQLLRAKDREARLNIL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8257.19606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4S1_ECTSI1.470e-12798.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YR16_9STRA3.890e-3744.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSF0_ECTSI1.220e-834.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8257contigEcto-sp13_S_contig8257:3615..6932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score65.9
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog2880.D7FSF0
Model size585
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2AUPK@1,2RZUJ@2759
Cds size585
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8257.19606.1prot_Ecto-sp13_S_contig8257.19606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8257 3615..6932 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.4703465-CDS-Ecto-sp13_S_contig8257:3614..37131681464095.4703465-CDS-Ecto-sp13_S_contig8257:3614..3713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 3615..3713 -
1681464095.48523-CDS-Ecto-sp13_S_contig8257:4418..45081681464095.48523-CDS-Ecto-sp13_S_contig8257:4418..4508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 4419..4508 -
1681464095.499699-CDS-Ecto-sp13_S_contig8257:4688..47991681464095.499699-CDS-Ecto-sp13_S_contig8257:4688..4799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 4689..4799 -
1681464095.5100987-CDS-Ecto-sp13_S_contig8257:4953..50371681464095.5100987-CDS-Ecto-sp13_S_contig8257:4953..5037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 4954..5037 -
1681464095.5198095-CDS-Ecto-sp13_S_contig8257:5443..55451681464095.5198095-CDS-Ecto-sp13_S_contig8257:5443..5545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 5444..5545 -
1681464095.5300438-CDS-Ecto-sp13_S_contig8257:6833..69321681464095.5300438-CDS-Ecto-sp13_S_contig8257:6833..6932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 6834..6932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8257.19606.1

>prot_Ecto-sp13_S_contig8257.19606.1 ID=prot_Ecto-sp13_S_contig8257.19606.1|Name=mRNA_Ecto-sp13_S_contig8257.19606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
QATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFRE
GKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEE
KLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERPPDKDKVQPHLLQQAI
DDMITQVEDIGQAIDVGMTDSLKGLQVEVNTVVAGSKRPGPYKQ*
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mRNA from alignment at Ecto-sp13_S_contig8257:3615..6932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8257.19606.1 ID=mRNA_Ecto-sp13_S_contig8257.19606.1|Name=mRNA_Ecto-sp13_S_contig8257.19606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8257:3615..6932- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCACTGCGCTGAAACACGTGGAGGAGGAGATCAATATGGCCATGCA
AAGAAGACTTGCGGCTGCCGACTCGAACCTGCGACAAGTCCTGGATCTGG
TGCGTTACGATGATTCGTACAGTAGGTTCTGGGAGTGTCGTTAGTACGTG
CTCCATGCAGCGATTGAGTGATACACATGAATGTGTATGTGTAGCGTGGC
GTGGCACAAGAAAAATAAAAGGCTTGGTATGTATCGGAAACGCTTCGTGG
AGAAAGTGGAGAAAAGAGAAACCCCAGATTTCTCCCCTGCAGCAGTGTAA
CGCGAAACGTACGCTGTGAGGTCTAGAGGCAAAACTACATGGCCATTTGC
GGAAGGGAAACGGTCACCTTTCGTTTTGTCATCACCTCCATTGCTCTGAG
GTCGTGGGCAGTATTCCGATATCACCAAGGCATTATGCATATGCAGACGT
ACATTCGTACACGAGTACGAAGTTCGATGCACATCATTTCCCGGTGCAGG
CATCCGACCTACATATCGGTACGGCGTAGTAACGACAGCGGTCACGCGCA
GTAACACGGAATGCGGCAAACATGTATCCACTCCGGCCCGTTATCCTGTT
TCGTTGTGACTCAAGTAGCCCAGTGAGTATAGTAGCTGGCATCGATCAAA
CTTAGAATGGGTCTCTCGTGACGTTCGGGTCTGTACTTGGCGAGACACGG
GCGCTTTAGAAAACGCTCACGAGACTCCCAGATCAGCAACTTCAACTCAA
CGAAACCCGCTGGAGAACTGAGTACGAAGGCCCTGGGGGACAAGAAAAGT
GCGCGTTCGTTCACGTGACGATTAGCTTACCGCAGTAGCTGTCCTTTGTG
TCACATCACCTCCCCTTGTTCAAACGCCCACAGGAGGGACCTTTTATGCA
CAATGTTGCAGTGCTACGAAGGCTGTATGCCGATGGCATCACAGATTGGA
ACATGGGTTTTCCGTCTAAACCACGTATCTCGAATATTTGCGAGACCTGG
GACGTATTTCTGGTACTCGTTTGAGATCGTTTCCAGGTGTGAGGTCTGCC
GAAGGGAATATGGTCGCACAGTGCACCCCGTGGCTGCTGTTGTAGGTAAA
GGCGCTGGTTGGTTCGTATAGCCGAAGTAGGACACGCGTTGTTGGTTCAC
ATGCAGGGGGACTACTTTTCCTGCGCACGCAAGCTCGCAGTGTCGAAGCA
GTTGGGTACATGGGCCTTCAATGGGCAAAAATCCTCAATACTTTTCATCA
GAGCGTGTGTCTCTAATCCCCATCCCCCTTCTCGTTGTTGTGCTGACAAC
TGGTGAGTACACCGTTCATAATGCATTTTGTATGCCTCGCCTACACATCT
CACAAAGGTATGTCGCTAAATCCTTTCCGCCGAGCAGGCCCCTGACATCA
AGAAGATGGAGGGCAGAATCCGAACACTATTTCGGGAGGGAAAGGTCAAC
ATGGCCTTCATGGTCATGATCAGCATGAACTTGCAACGGGTGAGGTGACA
ACTTCGACACGATTCTACGGGGCTGTGTTGCACCAGAAATGTACATCTAG
CAAAATGCTATTGCCTACATACAATCAATTGTGTATTTTCCCGCAGCGTG
AAGAGCCTGGAGTAGCAGTCGTCGTCCTGTGCCAAAACGGCAACCTTGGA
CCTTTTTGGGACAGGGTTTGCTTGTAATTTTTGGTCGTTTATCGTACTAT
AGTCGCAGCACGCACGTTTGCACCTTGAATTGGCGAAAAAACTTGGGAGT
ATAGGTAAGCCTTCAAGAGCGGGCTAACTTCGTGGACCTCGACATTCGGA
TTCTGTAAACTATGTTGGAGAAGAGGCAGTTTCCTCAACATGCAAACGTC
AGCATCATTCGGATTAACTCTGATTGTCGTTTCTATTATCTGCAGGCCAA
GGACGCCGAGGGAGCGGATCACGCCGTCATGCTTTTGACACATTTGACGA
CTTTCATCATGATGATACAAGACGAGCGGGTGAGAGGGTGTGACACGTCA
TGAGCAGCCCGACATCCCTTGCATGCGTCGCCAAAAGTACAAGGTCGGCA
TCTAGGCTACAGCCATGCATACTTCACTCGTCGCCCACGGTACTGCTACC
CATGCCGGCGTACACGAATCCTTTCTTACCCAGTTGAACCCGGAGGAGAA
GCTGCTGCGGACACTGCTGCGGACAGATTGCGATGGCGTCAGGAAGTCCA
TTCTCCAGGATCGATTACAACTGCCCAACAACGATGTGTTTTTGGTGAGT
CCTGGGTTTCGGTGTTTCGTCTGCGAAAAAGTTTTTCCCCAAAGACAACA
GCCATGCGGTGAGTTCTGGCGAAACCATTTGTGAAGCGTATCCTCATGCT
TGTAATCCCATGGCGAGCTCCGACCACCTCGTTGACCGTAGCAGTTCCAC
TGTTCAAACGAATCTGTCTCACAGGAGCGCCCTCCAGACAAGGACAAGGT
GCAGCCCCATCTTCTCCAACAGGCGATCGATGACATGATCACACAAGTGG
AAGACATAGGGCAGGTGAGCAGTGTAGTGCCCTGGTAGTCGTGGAATGCT
CAGCAGCTGGCTCCCACACTGCGATGCATGGTTCACTCACCTAAAAACGA
ACTCGGCCTGTTCATCTACGCATGCGTCGCTCATGCCGAATGAATGAGTT
TTGTGGGTTACGAGGGACGCCACATTTTAAATTTTCGTCCGGACCACATA
GTGACTATTCATCCGGATGTACCTGTCGCCTACGCGAGGTAAGGAATACG
TGTACCCTTTGTAAATGGGCCACCCATTTTTGTGGAAGATAAAGAACACG
TGCACGTTTTCGTATGTAGCGTTATTTAGGTGGTGTTGTGCCATTCTTAT
GTAAAGTGTTGTATTCGTGCTCACGTCCTACGATCTTTTCATGAAAATAT
TGGAGAAAGGGAATGATCTGTTGTACGCAATTTCAAACGTGTCATCGGGC
CATCTTCGTGCCAAATTTGAATTCGTTAATGCAAAGACCCGATCATACCG
TGCGTTCGTGCGTTGGATGTCGTCGTGGCGACAGAGGGACCGCCACCTCA
CCTCCCACGCAAGTAGATATTGTGCACTTCTGCGCCGTTACCGTGATCAG
CTGATTCGAAAGTTCTTCAAATAGCAACACAACAAGTACGATGAACTCGG
GGCTTTGCGCCATGCGATACACCACCGAATACCCTTGCCGTCCCGTCGGC
TCTCCTTGTCCTTCCGCAGGCTATCGACGTGGGCATGACAGATTCATTGA
AGGGTCTGCAGGTTGAAGTGAACACCGTGGTTGCGGGAAGCAAAAGGCCA
GGGCCATACAAGCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8257:3615..6932-

>mRNA_Ecto-sp13_S_contig8257.19606.1 ID=mRNA_Ecto-sp13_S_contig8257.19606.1|Name=mRNA_Ecto-sp13_S_contig8257.19606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8257:3615..6932- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCACTGCGCTGAAACACGTGGAGGAGGAGATCAATATGGCCATGCA
AAGAAGACTTGCGGCTGCCGACTCGAACCTGCGACAAGTCCTGGATCTGG
CCCCTGACATCAAGAAGATGGAGGGCAGAATCCGAACACTATTTCGGGAG
GGAAAGGTCAACATGGCCTTCATGGTCATGATCAGCATGAACTTGCAACG
GGCCAAGGACGCCGAGGGAGCGGATCACGCCGTCATGCTTTTGACACATT
TGACGACTTTCATCATGATGATACAAGACGAGCGGTTGAACCCGGAGGAG
AAGCTGCTGCGGACACTGCTGCGGACAGATTGCGATGGCGTCAGGAAGTC
CATTCTCCAGGATCGATTACAACTGCCCAACAACGATGTGTTTTTGGAGC
GCCCTCCAGACAAGGACAAGGTGCAGCCCCATCTTCTCCAACAGGCGATC
GATGACATGATCACACAAGTGGAAGACATAGGGCAGGCTATCGACGTGGG
CATGACAGATTCATTGAAGGGTCTGCAGGTTGAAGTGAACACCGTGGTTG
CGGGAAGCAAAAGGCCAGGGCCATACAAGCAGTGA
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