mRNA_Ecto-sp13_S_contig8257.19605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8257.19605.1
Unique NamemRNA_Ecto-sp13_S_contig8257.19605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8257.19605.1 vs. uniprot
Match: D7G4S0_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S0_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 7.930e-83
Identity = 139/161 (86.34%), Postives = 145/161 (90.06%), Query Frame = 2 
Query:  539 GACLRAFNLAKVRRRMAHHLGLPRLDREVPCRRCSQQALLXXXXXLLHNNRWRSGAHSHEHLHMAHQEDRRTLRAGYLGKRSRCRLSLEMRSFQWKRSERSLLPIRCDRRGHSPLPRGPRRAGPRCLSCKGRPAFQIWLRDKARCFGNLGQELTFWVAAAT 1021
            G  + A  + +VRRRMAHHLGLP LDREVP RRCS+QALL XXXXLLHNNRWRSGAHS EHLHM HQEDRRTLRAGYLGKR+RCRLSLEMRSF+WKRSERSLLPIRCDRRG SPLP GP RAGPRCLSCKGRPAFQIWLRDKARCFGNL QEL FWVAAAT
Sbjct:   54 GLVVHAQQVHQVRRRMAHHLGLPPLDREVPYRRCSRQALLPXXXXLLHNNRWRSGAHSREHLHMEHQEDRRTLRAGYLGKRNRCRLSLEMRSFRWKRSERSLLPIRCDRRGRSPLPHGPCRAGPRCLSCKGRPAFQIWLRDKARCFGNLEQELMFWVAAAT 214
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BLAST of mRNA_Ecto-sp13_S_contig8257.19605.1 vs. uniprot
Match: A0A6H5KJ22_9PHAE (BED-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ22_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 1.460e-81
Identity = 208/230 (90.43%), Postives = 209/230 (90.87%), Query Frame = 1 
Query:    1 TFARVPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKARIAGTNXXXXXXXXXXXXXXXXXKAETAAPGQQPAIPGQAMPPQFNGHQPMPGMMFPGGAPGPGMGFHPMGQPGFHXGMMGPXXXXXXXXXXXGPPPMHGGPNMPPHMFGGPRGPNGQMLGGPMQGGFPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPRGAVPPLFPAGAAAXXXXX-TAQQ 687
            T + VPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKARIAGTN XXXXXXXXXXXX    K ETA PGQQPA  GQ MPPQFNGHQPMPGMMFPGGAPGPGMGFHPMGQPGFH GMMGPXXXXXXXXXXX PPPMHGGPNMPPHM GGPRGPNGQMLGGPMQGGFPRXXXXXXXXXXXXXXXXXXXXX   XXXXXXX  XXVGPRGAVPPLFPAGAAAXXXXX TAQQ
Sbjct:   66 TISEVPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKARIAGTNGXXXXXXXXXXXXPETPKVETATPGQQPAXXGQGMPPQFNGHQPMPGMMFPGGAPGPGMGFHPMGQPGFHPGMMGPXXXXXXXXXXXXPPPMHGGPNMPPHMLGGPRGPNGQMLGGPMQGGFPRXXXXXXXXXXXXXXXXXXXXXKGAXXXXXXXGVXXVGPRGAVPPLFPAGAAAXXXXXXTAQQ 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8257.19605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4S0_ECTSI7.930e-8386.34Conserved C2H2 zinc finger protein n=1 Tax=Ectocar... [more]
A0A6H5KJ22_9PHAE1.460e-8190.43BED-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8257contigEcto-sp13_S_contig8257:229..3153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2381
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-20_000610.1
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.3956413-CDS-Ecto-sp13_S_contig8257:228..9161681464095.3956413-CDS-Ecto-sp13_S_contig8257:228..916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 229..916 +
1681464095.4073617-CDS-Ecto-sp13_S_contig8257:1119..12531681464095.4073617-CDS-Ecto-sp13_S_contig8257:1119..1253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 1120..1253 +
1681464095.4171648-CDS-Ecto-sp13_S_contig8257:1594..16331681464095.4171648-CDS-Ecto-sp13_S_contig8257:1594..1633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8257 1595..1633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.4292312-UTR-Ecto-sp13_S_contig8257:1633..31531681464095.4292312-UTR-Ecto-sp13_S_contig8257:1633..3153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8257 1634..3153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8257.19605.1prot_Ecto-sp13_S_contig8257.19605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8257 229..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8257.19605.1

>prot_Ecto-sp13_S_contig8257.19605.1 ID=prot_Ecto-sp13_S_contig8257.19605.1|Name=mRNA_Ecto-sp13_S_contig8257.19605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
TFARVPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKARIAGTNGGDGAP
AAAAAAAPETPKAETAAPGQQPAIPGQAMPPQFNGHQPMPGMMFPGGAPG
PGMGFHPMGQPGFHPGMMGPPRPGFNPMQHGGPPPMHGGPNMPPHMFGGP
RGPNGQMLGGPMQGGFPRGPPPAPPGPPPRGLPPGLQPGKGAPPNGAPPG
APPVGPRGAVPPLFPAGAAAAAAAATAQQPVAVGSTLTRAPTHGAPGGPP
NTSSGLPGQAQSMPVVVGDEEFSMEEKRAELAAYKV*
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mRNA from alignment at Ecto-sp13_S_contig8257:229..3153+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8257.19605.1 ID=mRNA_Ecto-sp13_S_contig8257.19605.1|Name=mRNA_Ecto-sp13_S_contig8257.19605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8257:229..3153+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTTTGCCAGAGTCCCAAATGCGAAGGAAGGGAGGAAGAGCGTGGACTT
GGAGATCTACGGCATAAATGGCATCCCAGCTGAAGCCTGGGCCGAGCGGG
CGGCAAAGAAGGCCCGCATCGCCGGAACCAACGGAGGCGATGGTGCTCCT
GCCGCCGCAGCAGCAGCAGCCCCGGAGACACCTAAAGCGGAGACCGCCGC
ACCGGGGCAACAGCCGGCGATACCTGGGCAAGCAATGCCTCCCCAGTTCA
ACGGGCATCAGCCAATGCCCGGCATGATGTTTCCCGGAGGGGCCCCGGGG
CCGGGGATGGGATTCCATCCCATGGGGCAGCCGGGGTTCCACCCGGGGAT
GATGGGACCGCCTCGACCAGGGTTCAACCCCATGCAGCATGGCGGGCCTC
CCCCCATGCATGGAGGCCCTAACATGCCGCCGCATATGTTCGGCGGGCCT
CGCGGCCCGAATGGCCAAATGCTCGGTGGGCCCATGCAGGGTGGGTTTCC
GCGGGGCCCCCCACCAGCCCCCCCGGGTCCGCCGCCACGGGGCTTGCCTC
CGGGCCTTCAACCTGGCAAAGGTGCGCCGCCGAATGGCGCACCACCTGGG
GCTCCCCCGGTTGGACCGAGAGGTGCCGTGCCGCCGTTGTTCCCAGCAGG
CGCTGCTGCTGCCGCCGCCGCCGCTACTGCACAACAACGTGAGTTTCATG
TGTTCGGTTAAGGTTACTCCGCATGTAAGAGGCAACTCGGGATGGAGGTT
GCACAAACGACTGTATTAATATGCGCCAGTTCGATGCGACATAATATCAC
CGGTTGATCTCCCCTACCTCATGAGAAGGCTTGTTTTTGCCTGTCAATTT
ACGTCCTAATTCATCGGTTCTTGTTTGTTTCGCGAATGAAGCGGTGGCGG
TCGGGAGCACACTCACACGAGCACCTACACATGGCGCACCAGGAGGACCG
CCGAACACTTCGAGCGGGCTACCTGGGCAAGCGCAGTCGATGCCGGTTGT
CGTTGGAGATGAGGAGTTTTCAATGGTGAGTGTTTTTTGCAACGGGGCAG
GTGTTTGCCTTGTCCTTTCCATGGGCATGGAGTTTTTATCATCTGCACAA
CTCTTTGTCTTTTTTTTAAGTCATGGTTGGTAAGACATTGGTAGGACCAG
TAGCCTCTTACATCGTTTGTGTTCGAAACCATGATCTTGTGGAGAATGAC
AGCAGTGCCTCGATGTGGTAGAGTCGAGGGGTGATTGGGTTCCATTTTGT
GGCAAAGTCGGCGGAGTCGGAGCGATGTTGTGCGTGCGCTCAGTATTCGC
ATGGCTTGCCAATGATATGGTAACTGTGATGCTCCTTGTCTCCGTGTGTG
ATGGTTAACCAAACAGGAAGAGAAGCGAGCGGAGCTTGCTGCCTATAAGG
TGTGACCGGCGTGGCCATTCGCCTCTGCCGCGTGGTCCTCGCCGGGCCGG
GCCGCGATGCTTGTCGTGCAAGGGACGACCCGCCTTTCAGATATGGCTTC
GTGACAAGGCACGTTGTTTCGGTAATTTAGGGCAGGAGCTGACGTTTTGG
GTAGCAGCAGCGACGTGATGTTTCTCTCCTCTGTTTAATCGAGTGTTCAT
GGGGCATGTCCCGTGGAACGTGAACCACATTGATCAAGGCAAGCACACTT
TCATGTGAGTCCGTGTCCTTTCTGTGAAGTGGTTGTCTGGGCTTCTGACT
CTCGGCTATCGCGATAGTAATAGTTCGCTTCAACAGTAGCCAGCTTCTGC
ATCAATCTTGTCTTGATCAAGGCCAGGTGCGTTTTTTCTCAATGACGAGC
ACATCATACCATTGTCCGCAAAAGTAAGGCTGGCTGCTCTTTGACAAGGT
GGGTGTAGGTTATCTCAGCAAAGTGCTTGTAGTAGGTCGTTTGCAGAGTT
GGTTTGGCGTCACGGAAGTGGAATCGAGGGAACCGATCGCATTGTCATGT
AAGTCCTACACTGCTCCTCAACGAGATGTGTGTAGCTTTTCGCGTTGGCA
AGTTGCGCAAACACAGTCATTGGTGAGGCGTCAGAGTCGAAATGGAGACG
GGAGCTTTTCCATGTGAGTGGCACTTGCTCGTAGTTAAAGGCAACGCAAG
TTGGTAGTGTTTGTTTTTGCGATGGTCTAAAACAAGCTGCAGAAAAAATT
GTGTAGTGTAGGGCGTCGGAATCGAGTGGAGGCCAAGCTGCTCATGTGAG
TCAAAGTTAAAAGGTACGTGTGTTTTTGTTTTTGGTTCTCATGTTTATCA
GAAATTTTTCAGAAAGTCAAAGCATCGTTGCGAGTTTTCTAGAATCGAAG
CCAGCGCTGTAATGTGAGAGACGTAACAATGCCGATCTTGCTAACGTTGC
TTGTAGGTTGTTGCCGTCGAAAGTTGTGCAATAGTTGGTGAGGCGTCGCA
AGTGAAAGCGATGCCCGAGCGCTCCCACATGAGTTCTTAACGATTCTGAA
CAAAGGTGGGTGGGGGTTCATTGCCTTAATTTACTCACGAGTTGCGGATT
AGTTGGTGAGACGTCGCGGTCGAACGGACGCCCGTTCGCACGTGATTTGT
GCCGCTGCTCGTACACAAGGTGGGTGCGAGAATTCGCCTTTGAGGTTCCT
TGCAATCGGTACAGGATTGAACGTTGAACTGGGGCCAGGCTCGTCTTGCG
GTTGTCTTCGCTGTCCGCTTACGGTCGGCGTAGCGACCATGCCCATTGGA
TGGGACTGATTGTTTTTCTCGTGAGTAGCCTTCCTCCTGGAAAAGGTGCG
TGTGGTGTGGATTCCGCCGTGCGTATCAAGCTGTACGGGAGCTCGCCGAT
CGGACACGACAGTTTTTTCTCATAGGAGTAGCTTCCACCGTTTCCTCGTA
AAAGGTACGTGTGGTGTGGGTTCCGCCGTGCGTTGCAAGCTGTGTGGGAG
CATGCTGATCGGATACGACATTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8257:229..3153+

>mRNA_Ecto-sp13_S_contig8257.19605.1 ID=mRNA_Ecto-sp13_S_contig8257.19605.1|Name=mRNA_Ecto-sp13_S_contig8257.19605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8257:229..3153+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTTTGCCAGAGTCCCAAATGCGAAGGAAGGGAGGAAGAGCGTGGACTT
GGAGATCTACGGCATAAATGGCATCCCAGCTGAAGCCTGGGCCGAGCGGG
CGGCAAAGAAGGCCCGCATCGCCGGAACCAACGGAGGCGATGGTGCTCCT
GCCGCCGCAGCAGCAGCAGCCCCGGAGACACCTAAAGCGGAGACCGCCGC
ACCGGGGCAACAGCCGGCGATACCTGGGCAAGCAATGCCTCCCCAGTTCA
ACGGGCATCAGCCAATGCCCGGCATGATGTTTCCCGGAGGGGCCCCGGGG
CCGGGGATGGGATTCCATCCCATGGGGCAGCCGGGGTTCCACCCGGGGAT
GATGGGACCGCCTCGACCAGGGTTCAACCCCATGCAGCATGGCGGGCCTC
CCCCCATGCATGGAGGCCCTAACATGCCGCCGCATATGTTCGGCGGGCCT
CGCGGCCCGAATGGCCAAATGCTCGGTGGGCCCATGCAGGGTGGGTTTCC
GCGGGGCCCCCCACCAGCCCCCCCGGGTCCGCCGCCACGGGGCTTGCCTC
CGGGCCTTCAACCTGGCAAAGGTGCGCCGCCGAATGGCGCACCACCTGGG
GCTCCCCCGGTTGGACCGAGAGGTGCCGTGCCGCCGTTGTTCCCAGCAGG
CGCTGCTGCTGCCGCCGCCGCCGCTACTGCACAACAACCGGTGGCGGTCG
GGAGCACACTCACACGAGCACCTACACATGGCGCACCAGGAGGACCGCCG
AACACTTCGAGCGGGCTACCTGGGCAAGCGCAGTCGATGCCGGTTGTCGT
TGGAGATGAGGAGTTTTCAATGGAAGAGAAGCGAGCGGAGCTTGCTGCCT
ATAAGGTGTGA
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