mRNA_Ecto-sp13_S_contig8253.19602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8253.19602.1
Unique NamemRNA_Ecto-sp13_S_contig8253.19602.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Match: A0A6H5KI34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI34_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 5.100e-62
Identity = 103/132 (78.03%), Postives = 108/132 (81.82%), Query Frame = 2 
Query:    2 GDKTLYGREKGDAGRFLSSEQGASMSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVLDHMF----RQHRCKKYANKPRGEFKPTDEKVKTITKDGLLKAVRTEAERVAKKASDGS 385
            GDKTLYGREKG  GR LSSEQGAS+ P DTSAQWT+HAVEE L+AEP TCSNC KPRELSWFFYGGG RR VVLDHM        RC K+ANKPRG FKPTDEKVKTITKDGLLKAV  EA RVAKKAS G+
Sbjct:   32 GDKTLYGREKGGDGRSLSSEQGASIRPADTSAQWTNHAVEESLKAEPATCSNCGKPRELSWFFYGGGQRRVVVLDHMVVGGSGTVRCNKHANKPRGVFKPTDEKVKTITKDGLLKAVGREATRVAKKASGGN 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Match: A0A6H5KU89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU89_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.970e-60
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 2 
Query:   11 TLYGREKGDAGRFLSSEQGASMSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVLDHMFRQHRCKKYANKPRGEFKPTDEKVKTITKDGLLKAVRTEAERVAKKASDGS 385
            TLYGREKGD GR LSSE GASM P DTSAQW DHA EEPL+AE +TCSNCE+ RELS FFYGGGTRR +VLDHM  +HRC K+ANKPRG FKP+DEKVKTIT DGLLKAVR EA+ VAKKAS G+
Sbjct:   44 TLYGREKGDDGRSLSSEHGASMRPTDTSAQWVDHAFEEPLQAEASTCSNCEEARELSLFFYGGGTRRVMVLDHMVGKHRCNKHANKPRGVFKPSDEKVKTITDDGLLKAVRREAKGVAKKASGGN 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 4.430e-60
Identity = 101/125 (80.80%), Postives = 107/125 (85.60%), Query Frame = 2 
Query:   11 TLYGREKGDAGRFLSSEQGASMSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVLDHMFRQHRCKKYANKPRGEFKPTDEKVKTITKDGLLKAVRTEAERVAKKASDGS 385
            TLYGREKG  GR LSSEQGAS+ P DTSAQWT+HAVEEPLRAEP TCSNCE+PRELSWFFYGGGTRR VVLDH    HRC KYA KPRG FKPTDEKVKTITKDG+ KAVR EA+R AKKAS G+
Sbjct:  374 TLYGREKGGDGRSLSSEQGASIRPADTSAQWTEHAVEEPLRAEPATCSNCEEPRELSWFFYGGGTRRVVVLDHKVGLHRCNKYAIKPRGVFKPTDEKVKTITKDGIRKAVRREAKRGAKKASGGN 498
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.520e-46
Identity = 89/129 (68.99%), Postives = 97/129 (75.19%), Query Frame = 2 
Query:   11 TLYGREKGDAGRFLSSEQGASMSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVLDHMFRQH----RCKKYANKPRGEFKPTDEKVKTITKDGLLKAVRTEAERVAKKASDGS 385
            TLYGREKG  GR  SSEQGASM P DTSA+W   AVEE L+AE  TCSNC +PR+LSWFFYGGG RR VVLDHM        RC KY NKPRG F PT++ VKTITKDGLLKAV  EA+RVA KAS G+
Sbjct:  390 TLYGREKGGDGRSTSSEQGASMRPTDTSARWMYQAVEESLQAEEATCSNCGEPRKLSWFFYGGGKRRVVVLDHMVGGESGGVRCNKYPNKPRGVFTPTNKNVKTITKDGLLKAVGREAKRVANKASGGN 518
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Match: A0A6H5KK46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK46_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.730e-39
Identity = 77/99 (77.78%), Postives = 81/99 (81.82%), Query Frame = 2 
Query:   59 EQGASMSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVLDHMFRQH----RCKKYANKPRGEFKPTDEKVKTITKDGLLKAVR 343
            EQGAS+ P DTSAQWTD AVEEPLRAEPTTCS+CE+ RELS FFYGGGTRR VVLDHM        RC KYANKPRG F  +DEKVKTITKDGLLKAVR
Sbjct:  372 EQGASIRPADTSAQWTDPAVEEPLRAEPTTCSSCEELRELSLFFYGGGTRRVVVLDHMVGGESGGVRCNKYANKPRGVFMSSDEKVKTITKDGLLKAVR 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8253.19602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KI34_9PHAE5.100e-6278.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU89_9PHAE1.970e-6077.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCN5_9PHAE4.430e-6080.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J6_ECTSI1.520e-4668.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK46_9PHAE5.730e-3977.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8253contigEcto-sp13_S_contig8253:433..1117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size685
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.1859908-UTR-Ecto-sp13_S_contig8253:432..5051681464095.1859908-UTR-Ecto-sp13_S_contig8253:432..505Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8253 433..505 +
1681464095.2041287-UTR-Ecto-sp13_S_contig8253:823..11171681464095.2041287-UTR-Ecto-sp13_S_contig8253:823..1117Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8253 824..1117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.195581-CDS-Ecto-sp13_S_contig8253:505..8231681464095.195581-CDS-Ecto-sp13_S_contig8253:505..823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8253 506..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8253.19602.1prot_Ecto-sp13_S_contig8253.19602.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8253 506..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8253.19602.1

>prot_Ecto-sp13_S_contig8253.19602.1 ID=prot_Ecto-sp13_S_contig8253.19602.1|Name=mRNA_Ecto-sp13_S_contig8253.19602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MSPIDTSAQWTDHAVEEPLRAEPTTCSNCEKPRELSWFFYGGGTRRSVVL
DHMFRQHRCKKYANKPRGEFKPTDEKVKTITKDGLLKAVRTEAERVAKKA
SDGSN*
back to top

mRNA from alignment at Ecto-sp13_S_contig8253:433..1117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8253.19602.1 ID=mRNA_Ecto-sp13_S_contig8253.19602.1|Name=mRNA_Ecto-sp13_S_contig8253.19602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8253:433..1117+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGACAAAACGCTCTACGGCCGCGAAAAGGGGGACGCCGGCAGATTCC
TTTCATCGGAACAGGGGGCGTCTATGAGCCCCATCGACACCTCGGCGCAG
TGGACTGACCACGCTGTCGAAGAACCCCTCAGGGCAGAGCCAACAACGTG
CTCCAACTGTGAAAAGCCAAGAGAGCTTTCGTGGTTCTTCTACGGTGGAG
GGACGCGCAGATCGGTGGTACTGGACCACATGTTTCGCCAACACAGATGC
AAGAAGTACGCCAACAAACCCCGTGGCGAGTTCAAGCCTACCGACGAGAA
GGTGAAAACGATCACCAAGGATGGCCTCCTCAAGGCAGTCAGGACGGAGG
CGGAGAGGGTGGCCAAAAAGGCGTCGGATGGTAGCAATTAGTTCAGGAGG
GTGGCAGGTGTTGCCCTGTCGAATAGTTGAGACAGATGGGTCGCGCGTTT
TGATCGCCGGCAGCCTGGTCGAGAGTTGGTCACGACGATGTGTCCACACT
TTGGTGGCGTGTTATAGACGGGGGCTGGCCACAGCCTTCCTGGGTAGACG
GGAGACCATTCAGTTTTGTCTGTTCCCTCGGGCGATTAAAACGATGCGGT
TTGTCACCGGACAACATCGCCTTTTTTGACGTACTTGTATATTGGATGTT
GGTGGTGTGAAGTGTGAACTTAGCAAGGAAAATGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8253:433..1117+

>mRNA_Ecto-sp13_S_contig8253.19602.1 ID=mRNA_Ecto-sp13_S_contig8253.19602.1|Name=mRNA_Ecto-sp13_S_contig8253.19602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8253:433..1117+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCCCATCGACACCTCGGCGCAGTGGACTGACCACGCTGTCGAAGA
ACCCCTCAGGGCAGAGCCAACAACGTGCTCCAACTGTGAAAAGCCAAGAG
AGCTTTCGTGGTTCTTCTACGGTGGAGGGACGCGCAGATCGGTGGTACTG
GACCACATGTTTCGCCAACACAGATGCAAGAAGTACGCCAACAAACCCCG
TGGCGAGTTCAAGCCTACCGACGAGAAGGTGAAAACGATCACCAAGGATG
GCCTCCTCAAGGCAGTCAGGACGGAGGCGGAGAGGGTGGCCAAAAAGGCG
TCGGATGGTAGCAATTAG
back to top