Homology
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Match:
D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI)
HSP 1 Score: 351 bits (900), Expect = 1.120e-118
Identity = 192/236 (81.36%), Postives = 206/236 (87.29%), Query Frame = 1
Query: 256 MPLAVLAGHSTLVSIKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLADEDHISIFGTPLVASGETGYIPAAATAASAFSISTKTDDVKALVAEVHASVEQGDAEALRKVLSSRCQQHPGEEVEDDGEDADGDSAQTGETQPKTLLVPVDSACPRTGMSPLLKAVEGGSAEVIRVLLDAGADVRMQAS 963
MPLAVLAGH TLVS+KGIVFDVSDDEAYNHEGALAGCAGHDASRVI A AG R G GDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVL DED+ISIFGTPLVASG+TGY PAAAT ASA +I+T+T++VKALVA +HASVEQGDAEA+R VLSSR QQ PGEEVED G DADGDSAQ ETQPK+LLVPVDSACPRTGMSPLLKAVEGGSA+ D D+ + S
Sbjct: 1 MPLAVLAGHPTLVSVKGIVFDVSDDEAYNHEGALAGCAGHDASRVIGASAGSRRGYGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLTDEDYISIFGTPLVASGDTGYTPAAATTASALAINTQTNNVKALVAVLHASVEQGDAEAVRNVLSSRYQQPPGEEVEDAGGDADGDSAQIEETQPKSLLVPVDSACPRTGMSPLLKAVEGGSAKAALYDGDTALDLARRLS 236
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Match:
A0A7S2RSP5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSP5_9STRA)
HSP 1 Score: 74.7 bits (182), Expect = 1.520e-11
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 157 KAAAITCPLGFGGGAN------DTGRPTAASFAKRGLPRMPLAVLAGHS-------TLVSIKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLADEDHISIFG 570
KA A TCPLGFGGG++ + A + LP M LA L H+ VS+KG VFDV+ D+ L+ C G D SR++A +G+ D L+ L GL YE+HQRLEA++ + + VA L+ E++ +FG
Sbjct: 64 KAEAPTCPLGFGGGSSAQXXXXXXXXXXGQAQAHQELPEMSLAALGRHNGKIPRMPKFVSVKGSVFDVTQDKESFGVPPLSDCCGSDVSRILA------VGSFDPN-LLNQSLAGLTYEQHQRLEAFYHMFSGRFKPVARLSAENYEQLFG 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10169.196.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.12e-118 / Id = 81.36 Expect = 1.52e-11 / Id = 37.09 Sequence D8LRP3_ECTSI A0A7S2RSP5_9STRA
Match Name E-value Identity Description
D8LRP3_ECTSI 1.120e-118 81.36 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RSP5_9STRA 1.520e-11 37.09 Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 972
Hectar predicted targeting category other localisation
Exons 2
Cds size 972
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462512.3621032-CDS-Ecto-sp13_S_contig10169:1754..2314 1681462512.3621032-CDS-Ecto-sp13_S_contig10169:1754..2314 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10169 1755..2314 +
1681462512.3738053-CDS-Ecto-sp13_S_contig10169:2790..3202 1681462512.3738053-CDS-Ecto-sp13_S_contig10169:2790..3202 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10169 2791..3202 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10169.196.1
>prot_Ecto-sp13_S_contig10169.196.1 ID=prot_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp
MSGGTCPFAAQWQRSQPTGTTAPTCPVGSGSPPPHPTTGASSSATATATA TTKAAAITCPLGFGGGANDTGRPTAASFAKRGLPRMPLAVLAGHSTLVSI KGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDA GLEGLRYEEHQRLEAYFVELARSRRAVAVLADEDHISIFGTPLVASGETG YIPAAATAASAFSISTKTDDVKALVAEVHASVEQGDAEALRKVLSSRCQQ HPGEEVEDDGEDADGDSAQTGETQPKTLLVPVDSACPRTGMSPLLKAVEG GSAEVIRVLLDAGADVRMQASVK* back to top mRNA from alignment at Ecto-sp13_S_contig10169:1755..3202+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10169.196.1 ID=mRNA_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:1755..3202+ (Ectocarpus species13 EcNAP12_S_4_19m)ATGAGCGGTGGCACGTGTCCCTTTGCGGCGCAGTGGCAGCGATCCCAACC
AACTGGGACAACAGCACCAACTTGCCCCGTGGGCTCCGGATCTCCCCCAC
CTCATCCTACTACTGGCGCGTCGTCATCAGCAACTGCAACTGCAACAGCA
ACGACAAAAGCAGCAGCAATCACCTGCCCGCTCGGTTTTGGAGGAGGAGC
CAACGACACCGGTAGACCAACAGCGGCCTCGTTTGCCAAACGCGGCCTCC
CGCGAATGCCCCTTGCCGTCCTTGCCGGACACTCCACGCTTGTTTCGATC
AAGGGCATCGTATTCGATGTATCCGATGACGAGGCCTACAACCACGAAGG
GGCACTCGCTGGATGCGCGGGACACGACGCGAGCCGCGTGATTGCAGCGC
CTGCGGGTGGTAGGCTTGGTAATGGTGACGGTGGTGGCAAGCTTGATGCT
GGGTTGGAAGGTTTACGGTATGAGGAGCATCAGAGACTGGAGGCTTACTT
TGTGGAGCTGGCTCGGAGTAGGCGCGCGGTTGCTGTTCTGGCGGACGAGG
ACCATATCAG GTTGGCCACACAGAGATGACGGCATTGGTATCGTACCAGT
CATGTTTGTGCCCAAATACGCAGCAACCTAAGACGCTGATATCCTCAAGG
TGTGCTGCTGTAGTGTGCCGTTTCCATATGGTAGCAACAGCCGTATTGTT
TTGTACACAAGCGACTGAGGTTGACGCCTGGTTTCGCTGAGCGGTTGGAC
GTGTCGCCATGCGCAGAGCTCCAACGAATGGACGATGGTCGACCGACATC
TTTGGAACTGCCATGCGCTGGGATCGTTCCTACGCCGTTCTGTTTGATTT
GACATTTGTTGCCGGGAGCACAGGCAAAAAGTTTTCTTTTCGGCGATCCT
GTAGTCTGGCAGCAGCGGCAGCATCTGGAGCATGGCGTGCAATCGTGGTG
GTGACGGTACTGCTGTCGTTGGCGGGGGCTGATATATACGGCCCTCCACT
TCTAACGCCAATCCCTCTCCCTTCGTCTCCTCCTAGCATTTTTGGGACTC
CTCTCGTCGCCAGTGGAGAAACTGGGTACATTCCGGCTGCTGCTACGGCC
GCTTCTGCTTTCTCCATCAGCACAAAAACTGATGACGTAAAGGCACTGGT
GGCCGAAGTCCATGCCTCCGTAGAGCAAGGCGACGCTGAAGCGTTGAGGA
AGGTATTGTCCTCACGATGCCAGCAGCACCCCGGAGAAGAGGTGGAAGAT
GATGGGGAAGACGCAGATGGAGACAGCGCCCAAACGGGAGAAACACAGCC
AAAGACTCTGTTGGTGCCCGTCGACTCCGCTTGCCCGCGCACGGGGATGT
CGCCGTTGCTCAAGGCGGTGGAGGGGGGCTCGGCGGAGGTGATAAGAGTG
CTGCTCGACGCTGGGGCGGACGTCCGAATGCAGGCAAGTGTGAAATGA back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10169:1755..3202+
>mRNA_Ecto-sp13_S_contig10169.196.1 ID=mRNA_Ecto-sp13_S_contig10169.196.1|Name=mRNA_Ecto-sp13_S_contig10169.196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10169:1755..3202+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGAGCGGTGGCACGTGTCCCTTTGCGGCGCAGTGGCAGCGATCCCAACC AACTGGGACAACAGCACCAACTTGCCCCGTGGGCTCCGGATCTCCCCCAC CTCATCCTACTACTGGCGCGTCGTCATCAGCAACTGCAACTGCAACAGCA ACGACAAAAGCAGCAGCAATCACCTGCCCGCTCGGTTTTGGAGGAGGAGC CAACGACACCGGTAGACCAACAGCGGCCTCGTTTGCCAAACGCGGCCTCC CGCGAATGCCCCTTGCCGTCCTTGCCGGACACTCCACGCTTGTTTCGATC AAGGGCATCGTATTCGATGTATCCGATGACGAGGCCTACAACCACGAAGG GGCACTCGCTGGATGCGCGGGACACGACGCGAGCCGCGTGATTGCAGCGC CTGCGGGTGGTAGGCTTGGTAATGGTGACGGTGGTGGCAAGCTTGATGCT GGGTTGGAAGGTTTACGGTATGAGGAGCATCAGAGACTGGAGGCTTACTT TGTGGAGCTGGCTCGGAGTAGGCGCGCGGTTGCTGTTCTGGCGGACGAGG ACCATATCAGCATTTTTGGGACTCCTCTCGTCGCCAGTGGAGAAACTGGG TACATTCCGGCTGCTGCTACGGCCGCTTCTGCTTTCTCCATCAGCACAAA AACTGATGACGTAAAGGCACTGGTGGCCGAAGTCCATGCCTCCGTAGAGC AAGGCGACGCTGAAGCGTTGAGGAAGGTATTGTCCTCACGATGCCAGCAG CACCCCGGAGAAGAGGTGGAAGATGATGGGGAAGACGCAGATGGAGACAG CGCCCAAACGGGAGAAACACAGCCAAAGACTCTGTTGGTGCCCGTCGACT CCGCTTGCCCGCGCACGGGGATGTCGCCGTTGCTCAAGGCGGTGGAGGGG GGCTCGGCGGAGGTGATAAGAGTGCTGCTCGACGCTGGGGCGGACGTCCG AATGCAGGCAAGTGTGAAATGA back to top