mRNA_Ecto-sp13_S_contig8242.19595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8242.19595.1
Unique NamemRNA_Ecto-sp13_S_contig8242.19595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8242.19595.1 vs. uniprot
Match: A0A6H5KZ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ31_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.340e-27
Identity = 249/252 (98.81%), Postives = 249/252 (98.81%), Query Frame = 1 
Query:  151 ASGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNKRDGYSNPRYFARAE 906
            A GQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T KRDGYSNPRYFARAE
Sbjct:  412 AGGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTIKRDGYSNPRYFARAE 663
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8242.19595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ31_9PHAE4.340e-2798.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8242contigEcto-sp13_S_contig8242:4508..5841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size909
Hectar predicted targeting categoryother localisation
Exons2
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464094.6504521-CDS-Ecto-sp13_S_contig8242:4507..52351681464094.6504521-CDS-Ecto-sp13_S_contig8242:4507..5235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8242 4508..5235 +
1681464094.662216-CDS-Ecto-sp13_S_contig8242:5660..58411681464094.662216-CDS-Ecto-sp13_S_contig8242:5660..5841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8242 5661..5841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8242.19595.1prot_Ecto-sp13_S_contig8242.19595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8242 4508..5841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8242.19595.1

>prot_Ecto-sp13_S_contig8242.19595.1 ID=prot_Ecto-sp13_S_contig8242.19595.1|Name=mRNA_Ecto-sp13_S_contig8242.19595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
NTYNDSNGPAGGVGGGGNPSSAAAVAAAAGDSSGGAREQHAPPPPPPERR
ASGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRC
AHEGCRRGPSYGQPGVKKPVFCSGHRLPGQVNVVSPRCQHPGCSRGPSYG
HSVDGRKPMFCAGHRQYGMVNVVSPQCGEVNCTRGPSYGFEGHRATFCAR
HKQEGQVNVVSPRCKEEGCTRGPSYGHEGDRRASYCAQHKRPGMVNVVSR
KCSIPGCGKGPSYGRDGDRKASYCAVHKREGDVNLTNKRDGYSNPRYFAR
AE*
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mRNA from alignment at Ecto-sp13_S_contig8242:4508..5841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8242.19595.1 ID=mRNA_Ecto-sp13_S_contig8242.19595.1|Name=mRNA_Ecto-sp13_S_contig8242.19595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8242:4508..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACCTATAACGACTCAAACGGGCCGGCGGGCGGCGTTGGAGGAGGAGG
CAATCCGTCGTCAGCAGCAGCAGTAGCAGCAGCAGCAGGCGACAGCAGCG
GCGGCGCAAGAGAGCAGCACGCCCCCCCCCCGCCGCCGCCGGAGCGGCGG
GCGAGCGGGCAGCCGCAAGAGCTGGTGCGGGTGTGCCAACACCTGGGCTG
CCGCCGTGGGCCGTGCTACGGGTGGGAAGGGGAGAAACGCGCCACGTTCT
GCGCGGCCCACGGCCTTCCGGGCCAGGTGAACGTGGTGTCGCCGCGGTGC
GCCCACGAGGGCTGCCGCCGGGGGCCAAGCTACGGGCAGCCCGGCGTCAA
GAAGCCGGTATTTTGCTCCGGGCACCGCCTACCGGGCCAGGTTAACGTGG
TGTCGCCCCGGTGTCAGCACCCGGGGTGCTCGCGGGGGCCGTCGTACGGG
CACAGCGTGGACGGGCGGAAGCCCATGTTCTGCGCCGGGCATCGGCAGTA
CGGGATGGTGAACGTGGTGTCTCCCCAGTGCGGGGAGGTGAACTGCACGC
GGGGCCCGTCGTACGGGTTCGAGGGCCACAGGGCGACGTTCTGCGCTAGG
CACAAGCAGGAGGGGCAGGTGAACGTGGTCTCGCCGCGGTGCAAGGAGGA
GGGCTGCACCCGCGGCCCGAGCTACGGACACGAAGGGGACCGCCGGGCGT
CCTACTGCGCACAGCACAAACGACCCGGGTGAGGAAGTAGTTTTTTGTTG
TTGGTGTTGTTGCCCGTGACTTGTACGTGAGCTGTTTACTCCTGCGCGAC
TATGAGATGATGTCCACTCTAAGCTATGCTGTATTCATGTAAAAAGAACG
TCACTTCTTAGAAGTCGTTTTGTTCCAACCTTTAAGTCCCATGAAGTGAT
GACTGGTCTCGAAGAAGGTGGGCTTGTTTCACGGTGCATATTGTTGTAGG
TTTACTCGTTACAACACAGTTTTCTGTTTGTGTGTGGCTTTGTCCCCCGA
GTTATCTATCTCCCCGAGCGAATCGGTTTGCAAGCCGGGGGTTCAGCAGG
ATGATGAAACAGGACGACCACCCACGCTCTTTTACGGCCCCTCCCCGTCT
AACGTATCGCTTCACGCCCGCCCGAATGCACGGCCTGTTGTCAAATGCCG
AAGCATGGTAAACGTCGTCAGCCGGAAGTGCTCCATCCCCGGCTGCGGCA
AGGGGCCGAGCTACGGTAGGGACGGGGACCGGAAAGCCAGCTACTGTGCC
GTGCACAAGCGGGAGGGGGACGTCAACCTCACGAACAAGCGAGACGGGTA
CAGCAACCCGCGTTACTTCGCTCGGGCCGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8242:4508..5841+

>mRNA_Ecto-sp13_S_contig8242.19595.1 ID=mRNA_Ecto-sp13_S_contig8242.19595.1|Name=mRNA_Ecto-sp13_S_contig8242.19595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8242:4508..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACACCTATAACGACTCAAACGGGCCGGCGGGCGGCGTTGGAGGAGGAGG
CAATCCGTCGTCAGCAGCAGCAGTAGCAGCAGCAGCAGGCGACAGCAGCG
GCGGCGCAAGAGAGCAGCACGCCCCCCCCCCGCCGCCGCCGGAGCGGCGG
GCGAGCGGGCAGCCGCAAGAGCTGGTGCGGGTGTGCCAACACCTGGGCTG
CCGCCGTGGGCCGTGCTACGGGTGGGAAGGGGAGAAACGCGCCACGTTCT
GCGCGGCCCACGGCCTTCCGGGCCAGGTGAACGTGGTGTCGCCGCGGTGC
GCCCACGAGGGCTGCCGCCGGGGGCCAAGCTACGGGCAGCCCGGCGTCAA
GAAGCCGGTATTTTGCTCCGGGCACCGCCTACCGGGCCAGGTTAACGTGG
TGTCGCCCCGGTGTCAGCACCCGGGGTGCTCGCGGGGGCCGTCGTACGGG
CACAGCGTGGACGGGCGGAAGCCCATGTTCTGCGCCGGGCATCGGCAGTA
CGGGATGGTGAACGTGGTGTCTCCCCAGTGCGGGGAGGTGAACTGCACGC
GGGGCCCGTCGTACGGGTTCGAGGGCCACAGGGCGACGTTCTGCGCTAGG
CACAAGCAGGAGGGGCAGGTGAACGTGGTCTCGCCGCGGTGCAAGGAGGA
GGGCTGCACCCGCGGCCCGAGCTACGGACACGAAGGGGACCGCCGGGCGT
CCTACTGCGCACAGCACAAACGACCCGGCATGGTAAACGTCGTCAGCCGG
AAGTGCTCCATCCCCGGCTGCGGCAAGGGGCCGAGCTACGGTAGGGACGG
GGACCGGAAAGCCAGCTACTGTGCCGTGCACAAGCGGGAGGGGGACGTCA
ACCTCACGAACAAGCGAGACGGGTACAGCAACCCGCGTTACTTCGCTCGG
GCCGAGTAA
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