mRNA_Ecto-sp13_S_contig8240.19594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8240.19594.1
Unique NamemRNA_Ecto-sp13_S_contig8240.19594.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8240.19594.1 vs. uniprot
Match: A0A6H5JX55_9PHAE (Glutaredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX55_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.020e-23
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:   95 MSYPTKKPHGRSSGWSQPRADLQPRPSARLNTNDREGVWLEPVATDQGS 241
            MSYPTKKPHGRSSGWSQPRADLQP PS R+NTNDR+GVWLEPVAT+QGS
Sbjct:    1 MSYPTKKPHGRSSGWSQPRADLQPHPSVRMNTNDRKGVWLEPVATEQGS 49
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BLAST of mRNA_Ecto-sp13_S_contig8240.19594.1 vs. uniprot
Match: D7G375_ECTSI (Glutaredoxin glutaredoxin/malate transporter fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G375_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.440e-20
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 2 
Query:   95 MSYPTKKPHGRSSGWSQPRADLQPRPSARLNTNDR-EGVWLEPVATDQGSXXXXXXXXXXXXXXXXXXXXSASAE 316
            MSYPTKKPHGRSSGWSQPRADLQPRPS RLNTN   E VWLEPVATDQGSXXXXXXXXXXXXXXXXXXXXSASAE
Sbjct:    1 MSYPTKKPHGRSSGWSQPRADLQPRPSVRLNTNGTAEDVWLEPVATDQGSXXXXXXXXXXXXXXXXXXXXSASAE 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8240.19594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JX55_9PHAE1.020e-2389.80Glutaredoxin domain-containing protein n=1 Tax=Ect... [more]
D7G375_ECTSI2.440e-2093.33Glutaredoxin glutaredoxin/malate transporter fusio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8240contigEcto-sp13_S_contig8240:3390..5858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score94.4
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog2880.D7G375
Model size337
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0695@1,KOG1752@2759
Cds size243
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464094.593974-UTR-Ecto-sp13_S_contig8240:3389..34681681464094.593974-UTR-Ecto-sp13_S_contig8240:3389..3468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8240 3390..3468 +
1681464094.6069968-UTR-Ecto-sp13_S_contig8240:5600..56151681464094.6069968-UTR-Ecto-sp13_S_contig8240:5600..5615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8240 5601..5615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464094.6166496-CDS-Ecto-sp13_S_contig8240:5615..58581681464094.6166496-CDS-Ecto-sp13_S_contig8240:5615..5858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8240 5616..5858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8240.19594.1prot_Ecto-sp13_S_contig8240.19594.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8240 5616..5858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8240.19594.1

>prot_Ecto-sp13_S_contig8240.19594.1 ID=prot_Ecto-sp13_S_contig8240.19594.1|Name=mRNA_Ecto-sp13_S_contig8240.19594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MSYPTKKPHGRSSGWSQPRADLQPRPSARLNTNDREGVWLEPVATDQGST
DRSSTDRSSTDQGSSEQVSSASAEVRNQLL*
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mRNA from alignment at Ecto-sp13_S_contig8240:3390..5858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8240.19594.1 ID=mRNA_Ecto-sp13_S_contig8240.19594.1|Name=mRNA_Ecto-sp13_S_contig8240.19594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8240:3390..5858+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGAGCCAGCCGCATCCAGGATTTGACGTGTCGGGCGAACGCCGGGCGT
GGCACCACCGGAACCACTGCTGTTGCCAGGTATGAAGAGGAGGCACTTTG
TTTGCCCCGCTTGGCTCGGCCTAAAATTACAAGAGCCACGATGGCGCCGT
GGTTGGAGTCGCCACGGTACAGCAGTACTGTAGTTTCTGGTGATCAGGCC
CGTGGACACCTCTGTGTACCAGGTACACAATACAGCATGGTCGATTGTGG
CCAACGAAGACAAGAAATCGAGAGAACGACGGACACGCTGCGTTTTATCA
TGCGCGAACGACCAGCAAATAGCAAAGCGCTTGTGAAGAAATCGTTCCAT
GTCAAAAGCCATAGTCTGGTTATAGTCTATCTATGTGTGCAAACAAATCA
TTTTATCTGAAGCTTTCGATAATACTACGGCTGCAATGGGTCGTGTCCAA
CAGCCGCCCGCCAGCCACAAGAAATGTGTGCTGCTATCTTTAACGTGTGC
TTGATATACTCTGACCGGCCATTCCGCCCGCTGTTGTGTTCGGAGATGTC
TGCCTGTAGAACTAGTCTAGATACAGACCACGTAAATCTACATATAATCT
TCCGATATTTATATTTGTAAATGATTCTTCTTCTGTGCGAGTATTGCGTT
TGCGGAGCTTGTGAAACAAAACCGCAGGGGAGCAAACGCCGAGCTTGTAT
GCGTACCCACCCGTCCGTGTCGCACACACAGGCCTAGCTTGTGCCAGGGA
AATACCCACGGTGGGACAGAAGGATAGAGTGGAACGTATTAGATAAAATT
AGACCATCTGACCAGTCAACTTAGATAAAATTAGACCATCTGACCAGTCA
ACGTTGACTGGTCAGATGGTCTAATTTTATCGAATAAAAGATACGCGCTC
AGCCGGTCCGTCCCCGGAGATCCGTACTCTCAAGTCTCGCAAGTGATCCA
GCCGGGTGCAAACGAGCTGAGCGCGTATCTTTTATTAGATAAAATTAGAC
CATCTGACCAGTCAACGGTGACTGGTCAGATGGTCCAATTTTATCTAATA
GAACGAACCACCGCAACCCCCGCCCCATAATGCCATCACTGTAAACATGT
TCCCGTCGATACGATTGATACGCCGACAAATAAAACGTTCACGTTTTTCA
TGACATTTTGTGGTCATTGTCATTACGGATCTATGCATGAAACCGCCTGA
AACCCCGCTGGAATTGGTACAACCGAGACGAAAGTATCCTAATGTTTGCT
GCTTTCGCCTTATAAACATACCAGGTACCCCCGGATCATTTGTTGTGCCC
AGCGCTATCACCTTTCTCTTTGGTACACTCGAGAGACATGAATAGGCTCG
CCTATGCGTGCTGATGTGGTTGTTCAACATAATCCTTCATATTTACTAGC
AGGTTCGTCGATTTTTCTGCAGCATTGATTTGTAGTGGACGAAGAGATAC
ACATTTACAAGTAAAACGTCCTGTAAAGGCTCCCCGTTGGGAGCGCGCTG
GCTTACCGGCCGGGGACGACGCAAGAGGGCATGGCCAAGGTCGTCACGCC
TGCACTTCGTTGCATCTCAACGTTCGGCAGTGCGAGTTTTTTCCCGTACA
ACCATTTGTAATGTGCGGTCACAGATTGAGGGGGTCATGTCGGGCTATTT
TTCGCGTGCACGGTATAGATGTGTGCTTTTAGGCTAGCGGCATTTTTTCG
ACAGGTCCTCCTGCGTTAACCCGCTTCGTTTGGTCGCTCGCTCTTGTTTG
TTTGTACCGTGTTGCTCATGGTCTGTGGGAAAGCGTGTGTGCGTTGCGCA
GGAGAATCAAAAGTATTCGTTGTAGATGCGAAGAAGGAGTTTGATATTTT
CTGTGAAGGCTTTTTTCGTTTCGAAGGCCTCCTCTCCGCGAAATAGAGTC
ATTGGGGGCGACTTTTGGTGCCGATTGCACGTGCCACGGGTGCCTGGCGG
TCCCCGGTCACGCGCGGTATGTTACCGACGAGCCTCCTGCGTGCCCCTGA
GAACGAAAATATGTTGTGACGAAGCACGAAAAACATGGTATACACGCGTT
TGGACATACATACCTCTTGATGGTGAAATCAATTTGCGTGAAGACATGAA
TGATTGTTCAACAGGGCTTCCGGAATCTGCGTGGGCACTGGCCCCTCCCC
CACCGAATCCCGTGCGTGCGCCCTTTGGCTGATACGTCGTAGTATTTTGC
GATTTCGACAGGAAGGGTGACGCGCCATGTCGTACCCCACGAAGAAGCCG
CACGGGAGGTCCTCAGGTTGGAGCCAGCCTCGGGCAGATTTGCAGCCTCG
TCCCTCCGCACGGCTGAACACCAATGACAGGGAGGGTGTTTGGCTAGAGC
CGGTGGCGACTGACCAGGGCTCGACTGACCGCAGCTCGACTGACCGCAGC
TCGACTGACCAGGGGTCGTCTGAGCAGGTCTCGAGTGCTTCCGCGGAGGT
GAGAAACCAATTGCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8240:3390..5858+

>mRNA_Ecto-sp13_S_contig8240.19594.1 ID=mRNA_Ecto-sp13_S_contig8240.19594.1|Name=mRNA_Ecto-sp13_S_contig8240.19594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8240:3390..5858+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTACCCCACGAAGAAGCCGCACGGGAGGTCCTCAGGTTGGAGCCA
GCCTCGGGCAGATTTGCAGCCTCGTCCCTCCGCACGGCTGAACACCAATG
ACAGGGAGGGTGTTTGGCTAGAGCCGGTGGCGACTGACCAGGGCTCGACT
GACCGCAGCTCGACTGACCGCAGCTCGACTGACCAGGGGTCGTCTGAGCA
GGTCTCGAGTGCTTCCGCGGAGGTGAGAAACCAATTGCTGTGA
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