mRNA_Ecto-sp13_S_contig12348.1959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12348.1959.1
Unique NamemRNA_Ecto-sp13_S_contig12348.1959.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12348.1959.1 vs. uniprot
Match: A0A6H5L6S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.560e-9
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 MLWENARGPHDQGLVSILHNRVMLLDKLRK 90
            MLWENARGPHDQGLV++LHNRVMLLDK ++
Sbjct:  807 MLWENARGPHDQGLVAMLHNRVMLLDKQKR 836
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12348.1959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6S2_9PHAE3.560e-983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12348contigEcto-sp13_S_contig12348:321..838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.2287333-CDS-Ecto-sp13_S_contig12348:320..3981681462657.2287333-CDS-Ecto-sp13_S_contig12348:320..398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12348 321..398 -
1681462657.2399418-CDS-Ecto-sp13_S_contig12348:754..8381681462657.2399418-CDS-Ecto-sp13_S_contig12348:754..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12348 755..838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12348.1959.1prot_Ecto-sp13_S_contig12348.1959.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12348 321..838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12348.1959.1

>prot_Ecto-sp13_S_contig12348.1959.1 ID=prot_Ecto-sp13_S_contig12348.1959.1|Name=mRNA_Ecto-sp13_S_contig12348.1959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MLWENARGPHDQGLVSILHNRVMLLDKLRKPWMPGANQGKGTHRFLSTST
VERK
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mRNA from alignment at Ecto-sp13_S_contig12348:321..838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12348.1959.1 ID=mRNA_Ecto-sp13_S_contig12348.1959.1|Name=mRNA_Ecto-sp13_S_contig12348.1959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12348:321..838- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTGGGAGAACGCGCGGGGACCACACGACCAGGGTTTGGTCTCTAT
ACTCCACAACCGGGTGATGTTGCTGGACAAGCTGGTGAGAGAGCCACTAG
ATTTGCAAGAAGCTGTTTTGTGGTTGTCCGGAGCTGTGCGGATGTTGTGA
CGTGGTTGTTTAGCATTTGAGAGCTTTCTTCCTCCTCATTCCAGACCTCA
CCACGCTCCAGGGGGGACACCAATCCACTTTGAATTTACCCCCCTGGGGT
TGGGACCGCCTCCCCGCCCCGAAGTTCAGTCAGAAGGTCACAACTAAAGA
CTGTTGATTTGTCCCCGGGGACAACTTTGAGATAAAGGGCAACAGACGCC
CTCCGCTTCCTCGAGTTTCCACCCGGGCTGACTATACAATGTATTTGCGA
TGAACTCCCTCCGAGATGTGTTTTTGTCAACACTGCGAAGCGAAAGCCCT
GGATGCCTGGGGCCAACCAAGGCAAGGGAACACACCGTTTCCTTTCAACT
TCAACGGTTGAGAGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12348:321..838-

>mRNA_Ecto-sp13_S_contig12348.1959.1 ID=mRNA_Ecto-sp13_S_contig12348.1959.1|Name=mRNA_Ecto-sp13_S_contig12348.1959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12348:321..838- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTGGGAGAACGCGCGGGGACCACACGACCAGGGTTTGGTCTCTAT
ACTCCACAACCGGGTGATGTTGCTGGACAAGCTGCGAAAGCCCTGGATGC
CTGGGGCCAACCAAGGCAAGGGAACACACCGTTTCCTTTCAACTTCAACG
GTTGAGAGAAAG
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