mRNA_Ecto-sp13_S_contig8230.19586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8230.19586.1
Unique NamemRNA_Ecto-sp13_S_contig8230.19586.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: D7FQL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL8_ECTSI)

HSP 1 Score: 571 bits (1471), Expect = 1.590e-202
Identity = 295/323 (91.33%), Postives = 300/323 (92.88%), Query Frame = 1 
Query:    1 RTMQGKVLMSDKQGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEISKTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            RTMQGKVLMSDKQG+HKKIL+DNIDYRAL R     ELKEKK                NVRGK+EDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLN+DTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDED GKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREE+SRGKFYSRIDRLDWEDM
Sbjct:  131 RTMQGKVLMSDKQGHHKKILKDNIDYRALKR-----ELKEKKXXXXXXXXXXXXXXXXNVRGKMEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEMSRGKFYSRIDRLDWEDM 448
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A6H5L860_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L860_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.270e-114
Identity = 174/185 (94.05%), Postives = 180/185 (97.30%), Query Frame = 1 
Query:    1 RTMQGKVLMSDKQGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEISKTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKR 555
            R   GKVLMSDKQG+HKK+L+DNIDYRAL RHGCPPELK+KKKEVA+VEKEISKTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLN+DTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDED GKAKR
Sbjct:   77 RENDGKVLMSDKQGHHKKVLKDNIDYRALARHGCPPELKDKKKEVADVEKEISKTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNSDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDSGKAKR 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A835YS51_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS51_9STRA)

HSP 1 Score: 322 bits (826), Expect = 2.300e-107
Identity = 163/244 (66.80%), Postives = 196/244 (80.33%), Query Frame = 1 
Query:  226 QTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVS--RGKFYSRIDR 951
            ++RAEL GRL  L+ Q R  + +L   +Y  ++EK R+K+I+  TT MAV DL+KYWTALDKAL+R+H MKIA+INKIIRELW +TY G DIDMIEIVSG+D    +A RSYNYRV MRK    LDMKGRCSAGQRVLAS+VIRLALAETFC++CGILALDEPTTNLD  NK GLA ALA+II+ RS+Q+NFQLI ITHDEEFV TMRT+LG+  GF+MPE+YW +SRE+     G+FYSR+ R
Sbjct:   13 ESRAELGGRLTALRDQGRDLKQRLKGGSYAGVQEKRRKKLIDVETTAMAVADLEKYWTALDKALMRYHHMKIAEINKIIRELWQITYKGGDIDMIEIVSGEDGASNRAGRSYNYRVAMRKGSTILDMKGRCSAGQRVLASIVIRLALAETFCINCGILALDEPTTNLDFENKDGLAKALARIIAQRSQQSNFQLIVITHDEEFVGTMRTQLGSIAGFNMPEYYWCVSREQTCGPSGQFYSRMTR 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7R9W3X1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3X1_9STRA)

HSP 1 Score: 318 bits (814), Expect = 6.820e-102
Identity = 173/312 (55.45%), Postives = 226/312 (72.44%), Query Frame = 1 
Query:   37 QGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEISKTDSENVRGKIEDIEEERLGKTQ-TRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            Q  +KK ++ N+    L R      + EK+KE+  +E+EI      +   +  +    R+ K + T+A+ +GR    K QIR  + KL T+ Y++I+E+HRRKMIE+ TT +AV DL+KY +ALDKALLR+H MKIADINKIIRELW +TY GEDI  I++ SG  E G +A RSYNYRVVM K  A LDM+GRCSAGQRVLAS+VIRLALAETFC++CG++ LDEPTTNLD+ NK GLA ALA+II++R+ Q NFQL+ ITHDEEFV  M+ EL    GFSMPE Y+++SREE S GK YS+I  +DW+++
Sbjct:  220 QERNKKNIQGNLKLVELLRG-----IDEKRKELDLLEEEIDAVQGSDTTERQYENAGLRIQKQENTKAQCEGRRAEKKEQIRSLKRKLKTEEYKDIDERHRRKMIEYETTTIAVEDLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDIANIKLESGQ-EKGSRAARSYNYRVVMTKGGAELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVMCLDEPTTNLDYANKRGLAVALAQIIANRASQTNFQLVVITHDEEFVTMMKNELSAHSGFSMPERYFQVSREEGSDGKHYSKIHAIDWDEL 525
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7S2B1T5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B1T5_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.170e-100
Identity = 161/306 (52.61%), Postives = 219/306 (71.57%), Query Frame = 1 
Query:   64 DNIDYRALNRHGCPPELKEKKKEVANVEKEISK-TDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRT---ELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            D + Y  L R     +++  ++ ++ + +EIS    + +++  I D+E ++L   Q R++  G++   + Q++    +L    +R I E+ R K +E  TT MAV DLDKYW ALDKALLR+H+ KI +IN+IIRELW+ TY G+DID IEIVSG++    +A RSYNYRV MRK D TLDMKGRCSAGQRVLA +VIRLALAETFC++CGIL LDEPTTNLD  NK GLA ALA IIS R+KQ NFQ+I ITHD +FV  MR+   +LGTQ  F++PE+YWRI R +V+ G++ S+I+R+DW+++
Sbjct:   56 DELQYHKLGR-----DMESVEQRISILSEEISAIVGAHDIQKLISDLESKKLALQQERSKNDGKMSSTQQQLKEIRNRLKESHFRKIHERTRLKRVEVETTVMAVEDLDKYWIALDKALLRYHSHKIQEINRIIRELWSTTYMGQDIDSIEIVSGEEGASTRASRSYNYRVAMRKGDTTLDMKGRCSAGQRVLACIVIRLALAETFCLTCGILTLDEPTTNLDEYNKQGLASALADIISIRAKQRNFQVIVITHDPDFVNYMRSAFNQLGTQRAFNLPEYYWRIFRSQVATGQYVSQIERIDWDEL 356
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7R9WT19_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT19_9STRA)

HSP 1 Score: 306 bits (783), Expect = 1.780e-100
Identity = 155/281 (55.16%), Postives = 213/281 (75.80%), Query Frame = 1 
Query:  130 EVANVEKEISKTDS-ENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            E+  +E+E+++++  EN    +  ++++    + ++A L+GR   +   IR  + KL    Y+N+EE++R  MI+H TT MAV D++KY +ALD ALL+FH++KIA+IN+IIR+LW +TY GEDI  IE+VSG D  G +A RSYNYRVVM K    +DM+GRCSAGQRVLAS+VIRLALAETFCV+CG +ALDEPT NLD NNK GLA ALA+I + RS Q+NFQLI ITHDE+FV  M+TEL +Q GF+MPE Y+++ REE + GK+YS+ID +DW+++
Sbjct:    4 EIEKLEEEMAQSEGHENAAEDLGKLDKKMQKLSASQARLEGRRSEIVESIRSLKRKLKQPEYKNVEEEYRVSMIKHETTLMAVRDIEKYHSALDHALLQFHSIKIAEINQIIRDLWRLTYKGEDITTIELVSGQDS-GARASRSYNYRVVMTKGSTRMDMRGRCSAGQRVLASIVIRLALAETFCVNCGCIALDEPTVNLDFNNKRGLAIALAQITADRSAQSNFQLIMITHDEDFVAMMKTELASQSGFTMPEKYFQVRREEGADGKYYSKIDAIDWDEL 283
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7S3Y9Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z4_HETAK)

HSP 1 Score: 301 bits (772), Expect = 4.890e-100
Identity = 145/201 (72.14%), Postives = 171/201 (85.07%), Query Frame = 1 
Query:  367 MAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            MAV DL+KYWTALDKAL++FH MKI DINKIIRELW +TY G DI+ IEIVSG++    +A RSYNYRV M K DA LDMKGRCSAGQRVL+S+VIRLALAETFC++CGILALDEPTTNLD +NK GLA+ALAKII++RSKQ NFQL+ ITHDEEFV  MR EL +  GFSMPE+++R+SREE+  G+FYSRIDR DW ++
Sbjct:    1 MAVQDLEKYWTALDKALMQFHRMKIEDINKIIRELWQITYQGNDIESIEIVSGEEGTSNRAGRSYNYRVCMTKGDAHLDMKGRCSAGQRVLSSIVIRLALAETFCLNCGILALDEPTTNLDSDNKRGLANALAKIIAARSKQTNFQLLAITHDEEFVAMMRNELASHAGFSMPEYFYRVSREELRAGRFYSRIDRNDWAEL 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7S4K6V4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6V4_9STRA)

HSP 1 Score: 315 bits (806), Expect = 2.220e-97
Identity = 167/312 (53.53%), Postives = 224/312 (71.79%), Query Frame = 1 
Query:   37 QGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEISKTDSENVRGKIEDIEEERLGKTQT-RAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            Q  HKK ++ NI+   L +      ++ K+KE+  +E+EI      +   +  +    R+ K +  +A+ +GR  G K QIR  + KL T  Y++++E+HRRKMIE  TT +AV DL+KY TALDKALLR+H MKI DINKI+RELW +TY GEDI  I+++S  D+ G KA +S+NYRVVM K    LDM+GRCSAGQRVLAS+VIRLALAETFC++CG+L LDEPTTNLD+ NK GLA ALA+II++R+ Q NFQL+ ITHDEEFV  M+ EL    GF+MP+ Y+++SREE S GK YS+I  +DW+++
Sbjct:  534 QERHKKTIQGNIELLGLMKG-----IETKRKELDMLEEEIDAVQGSDTTARDYEAAGLRIQKHENAKAQCEGRRAGKKDQIRSLKRKLQTPEYKDVDERHRRKMIEFETTLIAVKDLEKYHTALDKALLRYHGMKIQDINKIVRELWTLTYKGEDITNIKLMSDQDK-GSKAAKSHNYRVVMMKGTTELDMRGRCSAGQRVLASIVIRLALAETFCLNCGVLCLDEPTTNLDYANKRGLAIALAQIIATRASQTNFQLVVITHDEEFVTMMKNELSAHTGFTMPDRYFQVSREEGSDGKHYSKIHAIDWDEL 839
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7S2EEH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEH2_TRICV)

HSP 1 Score: 294 bits (753), Expect = 7.960e-97
Identity = 145/223 (65.02%), Postives = 179/223 (80.27%), Query Frame = 1 
Query:  301 TDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            T+ Y +I+E+HR+KMIE  TT +AV DL+KY +ALDKALLR+H MKIADINKIIRELW +TY GEDI  IE+ S  D  G +A RSYNYRVVM K    LDM+GRCSAGQRVLAS+VI+LALAETFC++CG++ LDEPTTNLD+ NK GLA ALA+II++R+ QANFQL+ ITHDEEFV  M+ EL    GF MPE Y+++SREE S GK YS+I  +DW+++
Sbjct:    2 TNEYNDIDERHRQKMIEFETTNIAVADLEKYHSALDKALLRYHGMKIADINKIIRELWTLTYKGEDITNIELASNQDA-GSRAARSYNYRVVMTKGSTPLDMRGRCSAGQRVLASIVIKLALAETFCLNCGVMCLDEPTTNLDYANKRGLAIALAQIIATRAAQANFQLVVITHDEEFVAMMKNELTAHTGFDMPERYFQVSREEGSDGKHYSKIHAIDWDEL 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Match: A0A7S2P0S2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P0S2_9STRA)

HSP 1 Score: 313 bits (801), Expect = 2.380e-96
Identity = 169/315 (53.65%), Postives = 222/315 (70.48%), Query Frame = 1 
Query:   31 DKQGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEIS--KTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTDTYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINKIIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDMKGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAHALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRISREEVSRGKFYSRIDRLDWEDM 969
            D  G  KK++  NI  R         ELKEK   + +    IS  +T S+ +R    D E ++L     R+  +G+L  L+   R  + KLNT+ Y++I+E+HR +MIEH TT +AV+DL+KY  ALDKALLR+H MKI DINKIIRELW + Y GEDI  IE+VS   + G KA +SYNYRVVM K +  LDM+GRCSAGQRVLA++VIRLALAETFC++CG++ALDEPTTNLD+ NK GLA ALA+II++R+ Q+NFQL+ ITHDE+FV  ++ EL    G SMPE Y+ +SREE   GK+YS+I  LDW+++
Sbjct:  569 DNSGTRKKLIEGNI--RVCEIQENIEELKEKNARIQDEIDAISGFETSSQELR----DAEAKKLQLEMARSRCEGQLSNLRETTRQLKRKLNTEEYKDIDERHRVRMIEHETTVIAVSDLEKYHRALDKALLRYHGMKITDINKIIRELWLICYKGEDITNIELVS---DGGSKASKSYNYRVVMTKGNTPLDMRGRCSAGQRVLAAIVIRLALAETFCLNCGVMALDEPTTNLDYENKNGLAIALAQIIANRASQSNFQLVVITHDEDFVAMLKNELAATAGTSMPERYFHVSREEAEDGKYYSKISALDWDEI 874
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8230.19586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQL8_ECTSI1.590e-20291.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L860_9PHAE1.270e-11494.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS51_9STRA2.300e-10766.80P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9W3X1_9STRA6.820e-10255.45Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2B1T5_9STRA1.170e-10052.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9WT19_9STRA1.780e-10055.16Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Y9Z4_HETAK4.890e-10072.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4K6V4_9STRA2.220e-9753.53Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2EEH2_TRICV7.960e-9765.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2P0S2_9STRA2.380e-9653.65Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8230contigEcto-sp13_S_contig8230:361..5574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score572.4
Seed ortholog evalue1.3e-160
Seed eggNOG ortholog2880.D7FQL8
Preferred nameRAD50
Model size972
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Exons8
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
Ec32 ortholog descriptionDNA repair protein Rad50, eukaryotes
Ec32 orthologEc-01_009220.1
Cds size966
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8230.19586.1prot_Ecto-sp13_S_contig8230.19586.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8230 367..5574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.852615-UTR-Ecto-sp13_S_contig8230:360..3661681464093.852615-UTR-Ecto-sp13_S_contig8230:360..366Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8230 361..366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.8750331-CDS-Ecto-sp13_S_contig8230:366..4671681464093.8750331-CDS-Ecto-sp13_S_contig8230:366..467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 367..467 +
1681464093.892422-CDS-Ecto-sp13_S_contig8230:934..10121681464093.892422-CDS-Ecto-sp13_S_contig8230:934..1012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 935..1012 +
1681464093.902327-CDS-Ecto-sp13_S_contig8230:1590..18161681464093.902327-CDS-Ecto-sp13_S_contig8230:1590..1816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 1591..1816 +
1681464093.9123647-CDS-Ecto-sp13_S_contig8230:2186..23291681464093.9123647-CDS-Ecto-sp13_S_contig8230:2186..2329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 2187..2329 +
1681464093.923182-CDS-Ecto-sp13_S_contig8230:3078..31631681464093.923182-CDS-Ecto-sp13_S_contig8230:3078..3163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 3079..3163 +
1681464093.9357848-CDS-Ecto-sp13_S_contig8230:3862..39641681464093.9357848-CDS-Ecto-sp13_S_contig8230:3862..3964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 3863..3964 +
1681464093.947315-CDS-Ecto-sp13_S_contig8230:4623..47101681464093.947315-CDS-Ecto-sp13_S_contig8230:4623..4710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 4624..4710 +
1681464093.959631-CDS-Ecto-sp13_S_contig8230:5430..55741681464093.959631-CDS-Ecto-sp13_S_contig8230:5430..5574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8230 5431..5574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8230.19586.1

>prot_Ecto-sp13_S_contig8230.19586.1 ID=prot_Ecto-sp13_S_contig8230.19586.1|Name=mRNA_Ecto-sp13_S_contig8230.19586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
MQGKVLMSDKQGYHKKILRDNIDYRALNRHGCPPELKEKKKEVANVEKEI
SKTDSENVRGKIEDIEEERLGKTQTRAELKGRLHGLKGQIRGYEAKLNTD
TYRNIEEKHRRKMIEHRTTEMAVTDLDKYWTALDKALLRFHTMKIADINK
IIRELWAMTYSGEDIDMIEIVSGDDEDGGKAKRSYNYRVVMRKNDATLDM
KGRCSAGQRVLASVVIRLALAETFCVSCGILALDEPTTNLDHNNKVGLAH
ALAKIISSRSKQANFQLITITHDEEFVQTMRTELGTQGGFSMPEFYWRIS
REEVSRGKFYSRIDRLDWEDM*
back to top

mRNA from alignment at Ecto-sp13_S_contig8230:361..5574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8230.19586.1 ID=mRNA_Ecto-sp13_S_contig8230.19586.1|Name=mRNA_Ecto-sp13_S_contig8230.19586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5214bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8230:361..5574+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACCATGCAGGGGAAGGTTCTGATGTCGGACAAGCAGGGCTACCACAA
GAAGATACTCAGGGACAACATAGACTACCGCGCCCTTAACAGGCATGGAT
GCCCTCCGTGTAGAAGTATATTTTTTCTTTGTCTTCCTTTGTACTAAGTT
ACCTTTCACCGCAACAAACGTGCTGCTGGATGAATAACATCTTGCGGTTT
GTGTTCACGCGCTAAAGCACCTTTTAGTGAGCTTGAGGGAAAGAGATCAT
TTATTGTTGACGAAATTAGAGGTGTGTTTTCGTTGGCCTATATACAATAC
GTCCATATTTTCTCCATCTCTCTTTGTTTTGCTGTGTGAGTGATCCGATT
GCTGATGCGCGATAACCCCCCCCTTTTTTTTTTTTCTTCGAGAAGGAGCG
GGCCTGTTTCGGCTTAACGCACGCCGCCCACTTGCGTCTTTCAAAATACA
CAAGTTACTATTGTGACGCATTCTTCACGTTGTACGGAATTTTTGGTTTT
TTGTCCTGTCCTGATGTTCGTGGTCCCTGCTTATGTGCTCGTGGCTTTTC
TTTTGCGGACTCCGTTGCAATCAGGGAGTTGAAGGAGAAGAAGAAGGAGG
TGGCCAATGTGGAAAAGGAAATCTCGAAGACCGACAGCGAGAACGTCCGA
GGGTACGTGGTACAGCAGTGGTGGTCCCGATATATCGCGGTGTGCAGTGG
CAGACAATAATCACTGCATTAAATCGGGACCAGCTCTTTGGGGAAGGCCC
AGTAATTTAGTTCTTTTGGTGCCAAGAATTTTTTTCCGCCATATATTGGG
AACCGCGCCGTTCGGGACCGTCGATCTATCGGGTACTGCTGCAAAATTTG
CGCGACGTCATTGGTCGTTGTGTCTGGGAAGCTGTGTGCGCGCATGCATG
TGTTATAGCCAAGAAGATGGTGGGGCGGGTGGGGCGTCTGCCGATGACGA
TGGCGGAACGCGGCATGCGGAAGACCCGGGTGTCTTGGAAGTAGTCCCCC
GACTTTTGATGGTTCTTAGAACGGACGTGTCAGATAATATAATTTAACCT
ACGACACCATTGTTTTCGTGTGCACGCATGCAATCTTGTGCTTTCTCTTA
CTTTTCTGAGACATCCGCAACCTTTGTTGTGTTGGCGGTACCGTTTGTTT
TCTCTCCCTCACTCTTTTTTTTTCGTTTTCTCCCCTGGAAATTCAGCTCT
TTTTTCTTTCTTTGTTTTGTTTCTCCTCAGGAAAATCGAAGATATCGAAG
AGGAGAGGCTAGGCAAGACGCAGACGCGCGCCGAGCTCAAGGGCCGGCTG
CACGGCTTGAAGGGACAGATCCGAGGGTACGAGGCAAAGCTTAACACGGA
CACGTACAGGAACATCGAGGAGAAGCACCGTCGGAAGATGATCGAGCACC
GCACCACCGAGATGGCGGTGACGGACCTTGACAAGTACTGGACCGCTCTC
GACAAGGTAGTCGTTGTTGTTGTTGTTGTTGTTATTGTGTCTTCTGTAGT
TGTCGTGGCCAAGTGCTTCCCCCGTTTGCATTGCGGCCAATGTTGCTGTT
TTTTGCGTTTTTTTCATGACTGAGAGTTGTCTCGAAGTGCAACAATATTT
CTTGATCACACACACACACACACACACACACACACACACACCCGTCGCTC
GCTCTGTCCCGGCATGGTAGACATGCAAGGTCCATGGTCTACCAACCACG
GCATGCATTCACATCAGTACACTCCCCTTGTTCGTGTGGCCAGCTGCACC
GCACCCATTCGTCGTCACCGTCCTTGCCGCATACGCTTGTTTTGTTTTGT
GTTCGTTTCACACGTGTGCGCGCCAGGCGCTGCTCCGGTTCCACACGATG
AAGATCGCCGACATCAACAAGATCATCCGGGAGCTCTGGGCCATGACATA
CTCCGGCGAGGACATCGACATGATCGAGATCGTCTCGGGGGACGACGAGG
ACGGCGGCAAGGCCAAGCGGTGAGGGAGAGGTTTAGGGTTTCCACGCACA
CAAAGGGCGCAGCACGTGCGTACTTGGTAGCAAGAGGTGGCTTTTTCGAT
TAGCGTAGACTCGAAAGTGCGTGCCGTAGGTGGTACGAGACGGCACATCG
CAGGGACAAAGCTCGATTACTCAACAGCAGAAAGTAGGCGACACGAGATA
GCACACCCCAGGGACAAAGCTCCAATTCTCAACAGCAGAAAGTAGGCGAT
ATGAGAAAGTACAACCCCTGGACAAAGCTCGATTACTCGACACCAGAAAG
AGTGGCGGTCCCAAAAATGTCGACGTTGGAACCGTCCACGTCGAGAGCTT
TCCGAAGACGCACTGTTTTGACTGTGGCGTCATCTTCGCCGTGGAGTGCT
GTAGCCGAGGTTTTGAGAATCGGTCCAGGGGGTGTGCTATCTTGTGTCAC
CTATGTGATCCTCGTCTTTCACGGGGACGACGGCGGCGCTGAAAAACCGG
GTTGCCGCCTCACTCTATGGGATTTGACGGGAAGCTGAGTGAAGGCGTGC
TTCTGTGTCTTGTCTCGTCTCCGAAAATTGTGTGCGCTCTCGGCGAAAGG
GGATGCGTTTGCGTCGTTGTTGCTGTTGCCGCCTTTGGAACTATCCGCGA
GCGGGCCCTAATTCCGTGTGAAGCCACACGCAAGGGTTTTGTAACCACGC
GCCTGCTGCTGCAGCACGGGACTTATTTGGTTTTTATGCGTTGTCACTCC
GATCTCGTGCGTTTCCAGGTCCTACAACTACCGGGTGGTGATGCGAAAGA
ACGATGCCACCTTGGACATGAAGGGCCGCTGTAGCGCCGGTCAGAGGGTT
CTGGTAAGCCAGATACGAGAGAGAGGGAGGTAGACACACATGAAAGATAG
GACGGAAACGGACGGAGACGTAGTGGGAAGGGGGAGGGGGGGGGGGCGCC
CTGATGGGTTGCACACCTCATGTGGGAGACCATCTACCACGCGTCCTCGA
GAGCATGGAGCATTTTTCCCATTAGACCGATCACCGATGGCCAATCCTTT
CCCTCCTACTTTTCCAAAGGTGACTCAATTTTTTTTTCCCTATCACGTAG
TGGGGGGACGGGTCTGAACTCGCCTACTTCGGGAACGATGCGGGGTCACG
AAGATGATGTTATGCCACTCTGGCCTGGTTAGCGTACGTACGTGTAGATG
GTATCATGGACTGCACGACTCATATGCGTAGACGGCATCGGAGTCGATAT
TCTGGAAGCTTGGTCGTCGAGACAAGCTCTTACTTCCGGTTGCACTTCGT
CGTTTGTTGTTACTGCGTTATCAATCTCGCATGTTGTAGTTTTATCACAA
GCAGTTGTACTTCGAAGTAGTAATTTTACTTGTTTTTTCGCCTCGTTTGT
TGCATTAGGTATTCGTGGTGTCAGAACAGGGTTTGCTGTTGGATTGTCAA
CACCACCAACAGATAGTTTGGTCAGGGAATAGCAACCATAATAATTGCAG
CAACCAAACAACAACTCTGTCGCGGTTGACTTCGCCCCCATCCCGTGTGC
AGGCGAGCGTGGTGATCCGGCTTGCCCTGGCTGAGACTTTCTGCGTCAGC
TGCGGCATCCTTGCACTCGACGAGCCTACCACCAACCTCGACCACAACAA
CAAGGTGCGGGTCGCGGCGGAGGTAGTTTGGGGTCGTTCTTGTTTCTGTT
TTCCTTCGTGTCTCCGAGTGCATGGCAGTAGTCGAGAGGTGCAGCTCAAT
TCGGGATGACCCGTAGCCAGAAAGGCAGCAACCGGCGTACAACGGAAAAC
GATGCATCGATCAGCATGCTTGGCTTTGCCTGATCGCGGTGCAAGCTAAT
GTTATCGAGAGACGAACGCTCCGATTCGAGTCTCGACTCCGTTACCACGC
CACCTCCCACTCAGCCACGGGGCCCTCCGCCCTCGTTGTATATATGTGTC
CACGTCTTTGCCAAGGAAATAGCATACGAAAGATATATCCGGGATTACTT
TTTGCGGACGCTCGTCGACGCTTGGCCTCTGGTCTCTGGTAGTTGCATGA
ACTTCTGGGGGTGAGACTTGGCACGTTGAGAGAGTTCGCGGACAGTTTCC
GTTCTTTCCTGGTGCGAGCACGATTCGCGAGCAAGTGTGTGCATGCGACG
CCGACGACTAGCCCATCACATCTTTTCCGCCCCCCCGTGCTTTCACCTCA
AGCGATTTCTTGAAGCATAACGTGTCGTGTCTCCTACGCCGTCTGTCCGT
CGGTTTCGTCGCTTTTCCACGGGAAAAAATGATGAAAATGAATCGAAATA
TAATTGGGAAAAGGTGGGGCTGGCGCACGCGCTTGCCAAGATCATCAGCA
GCCGGTCCAAGCAGGCCAACTTCCAGCTGATTACCATCACGCATGACGAG
GTGTGTTTCGGGGGAAGTGCGAGCCTTTCGATTCTTTGCCTTCCGTCTTT
GTAATATTGTCTGTGGCTGGAAATGCGAACTAGTCAACCTCTCATATTTT
CCAGCCATCCAACAAAGGGTGCAAAATCACATTTGGTTTTGGCACGAACG
AGTGCGAGCGAACAAGCAACGGAAATCCCCCTTTTTCCAATTCTCTAGTC
CGTGCGTGTGTCACTGTCGCCGCGCTGTTTTCGACTGGGCCATAGAAAAA
GCTAGTGGGGAGTAGACAAATGTCATGCATGCATACCCCAGAGGACGTTT
CTCACGTCACCCCTCGAATATTATACGCCTGTGCCGCATGTCAATCGTGG
GGACTTACATGCGTACGCTTTTTCTACGAGATATTTTTCTCTACGCATAT
AATGGTTGAGCTCAGCTCAAAATGGAAGGGATAAGGTACGCGCGTGTGTG
GGGCAAGTGGTGTCGGAGCGACCCGCGCAAGTCGAAATCTGCGGCCGTCG
CCCAAAAGAGTGGCGGAGAAGTTGACTGGCGGTTTAGCGGCGAGAGATCA
CGCTATCTTCTGACAGTCAGTGGTGTTTTCGCGTACTCTTGACAGGTTTG
CACGTTTCTCGTTCCAAGAGTTGACGTACATTGGATTCATCCTACAGGTT
GCATGTTACTCGTTTACGAGTTGACGTACATTCGACCCATCCTTCCATGG
TTTGTATTGTCTTTGAGCAGGAGTTCGTACAGACGATGCGGACGGAGCTG
GGAACGCAAGGCGGATTCTCCATGCCGGAGTTTTACTGGAGGATTTCCCG
GGAGGAGGTGTCCAGGGGCAAGTTCTACAGCCGAATCGACCGCCTAGACT
GGGAAGACATGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8230:361..5574+

>mRNA_Ecto-sp13_S_contig8230.19586.1 ID=mRNA_Ecto-sp13_S_contig8230.19586.1|Name=mRNA_Ecto-sp13_S_contig8230.19586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8230:361..5574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGGGAAGGTTCTGATGTCGGACAAGCAGGGCTACCACAAGAAGAT
ACTCAGGGACAACATAGACTACCGCGCCCTTAACAGGCATGGATGCCCTC
CGGAGTTGAAGGAGAAGAAGAAGGAGGTGGCCAATGTGGAAAAGGAAATC
TCGAAGACCGACAGCGAGAACGTCCGAGGGAAAATCGAAGATATCGAAGA
GGAGAGGCTAGGCAAGACGCAGACGCGCGCCGAGCTCAAGGGCCGGCTGC
ACGGCTTGAAGGGACAGATCCGAGGGTACGAGGCAAAGCTTAACACGGAC
ACGTACAGGAACATCGAGGAGAAGCACCGTCGGAAGATGATCGAGCACCG
CACCACCGAGATGGCGGTGACGGACCTTGACAAGTACTGGACCGCTCTCG
ACAAGGCGCTGCTCCGGTTCCACACGATGAAGATCGCCGACATCAACAAG
ATCATCCGGGAGCTCTGGGCCATGACATACTCCGGCGAGGACATCGACAT
GATCGAGATCGTCTCGGGGGACGACGAGGACGGCGGCAAGGCCAAGCGGT
CCTACAACTACCGGGTGGTGATGCGAAAGAACGATGCCACCTTGGACATG
AAGGGCCGCTGTAGCGCCGGTCAGAGGGTTCTGGCGAGCGTGGTGATCCG
GCTTGCCCTGGCTGAGACTTTCTGCGTCAGCTGCGGCATCCTTGCACTCG
ACGAGCCTACCACCAACCTCGACCACAACAACAAGGTGGGGCTGGCGCAC
GCGCTTGCCAAGATCATCAGCAGCCGGTCCAAGCAGGCCAACTTCCAGCT
GATTACCATCACGCATGACGAGGAGTTCGTACAGACGATGCGGACGGAGC
TGGGAACGCAAGGCGGATTCTCCATGCCGGAGTTTTACTGGAGGATTTCC
CGGGAGGAGGTGTCCAGGGGCAAGTTCTACAGCCGAATCGACCGCCTAGA
CTGGGAAGACATGTGA
back to top