mRNA_Ecto-sp13_S_contig8229.19585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8229.19585.1
Unique NamemRNA_Ecto-sp13_S_contig8229.19585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 6.190e-54
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSKRVSTLRELALRGEAAAKRLLESSGLAPADGSGGRGRG 327
            SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAW+DADTLLQ+PGVGPTQAARLRSKRVSTLRELALRGEAAAK LLESSGLAPADG+ GRGRG
Sbjct: 2065 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWEDADTLLQVPGVGPTQAARLRSKRVSTLRELALRGEAAAKSLLESSGLAPADGNVGRGRG 2173          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.230e-15
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSKRVSTL 231
            SDY+ DT+SVLDQ++R++NAM+DIAA  GLL + L L+RL QM+VQAA  +   L+QLPGV    AA  + + VS L
Sbjct:  257 SDYINDTKSVLDQSLRILNAMVDIAADEGLLGSALDLMRLSQMIVQAAMPEDSDLMQLPGVDEQAAAAAQRRGVSNL 333          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A2R6WZK4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZK4_MARPO)

HSP 1 Score: 75.5 bits (184), Expect = 1.310e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSKRVSTLREL 240
            SDY+TDT+SVLDQ++R++ AM+D++A  G L+T+L  + L QMV+Q  WDD   LL LP V       L  + ++TL +L
Sbjct: 1692 SDYITDTKSVLDQSIRILQAMVDVSANSGWLQTSLNTMHLLQMVMQGLWDDVSPLLMLPHVDEVVMKTLAQRGITTLPKL 1771          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A6L5CM08_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CM08_9INSE)

HSP 1 Score: 74.7 bits (182), Expect = 2.360e-13
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSKRVSTLREL 240
            SDY TD +SVLDQA+R+I AM+D+ A + LL TTL  L L Q +VQAAW +  +L  LP V P  A +L ++  STL EL
Sbjct:  750 SDYYTDLKSVLDQAIRIIQAMVDVCAEYALLATTLRALLLLQGIVQAAWPNQTSLCTLPYVEPPLAQKLSNRVASTLPEL 829          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A7S2W0G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0G5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.470e-13
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLP--GVGPTQAARLRSKRVSTLRELALRGEAAAKRLLESS 285
            SDYV DT++VLDQA+RV+NAM+D+AA  G L   + L+ L QM VQ    DA  L QLP    GP Q A L +  V TL+++A +   A +++ +++
Sbjct:    6 SDYVNDTKTVLDQALRVLNAMVDLAADEGHLNAAVQLMHLAQMTVQGLGPDASELEQLPYSSQGPVQEA-LEAAGVRTLKDVAAKSRGALQKITKAA 101          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.580e-13
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSK----RVSTLRELALRGEAAAKRLLESSGL 291
            SDYV DT+SVLDQA R+INAM+DIAA  G+L   LG +RL QM++QA  D +  LLQLP +      R + +    +   LR+ A   + A +RLL  +GL
Sbjct: 1979 SDYVNDTKSVLDQAPRIINAMVDIAADEGMLPVALGTMRLAQMLMQACDDKSSPLLQLPSLRAVIQHREKDEISRWQQEDLRQWAQADQRALRRLLVGAGL 2079          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A0M0JAY3_9EUKA (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAY3_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 1.140e-12
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGVGPTQAARLRSKRVSTLRELA 243
            SDYVTDT+SVLDQA+RV+ AM+DIAA  G L+TTL ++ L QMV QA + D      LP V     A LR+K ++ L  LA
Sbjct: 1092 SDYVTDTKSVLDQAMRVLQAMVDIAADGGWLDTTLSVMHLVQMVTQARFLDDSPFTDLPHVDEKVEAALRAKGITDLATLA 1172          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A388LPF4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LPF4_CHABU)

HSP 1 Score: 71.6 bits (174), Expect = 2.960e-12
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQ-LPGVGPTQAARLRSKRVSTLRELALRG 252
            SDY+TDT+SVLDQ +R++ AM+D+AA  G ++T    L L QM VQA W D D+ LQ LP V       L ++ +STL EL   G
Sbjct: 1833 SDYITDTKSVLDQCMRILQAMVDVAANGGWMQTVFNTLHLLQMAVQALWWDTDSSLQMLPHVTEDAMTALVARGISTLAELMTAG 1917          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: L8HD92_ACACA (DEAD box RNA helicase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HD92_ACACA)

HSP 1 Score: 71.6 bits (174), Expect = 2.960e-12
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLP 177
            SDY+TDT+SVLDQAVR++ AM+D+AA  G L+TTL  + L QMV+QA W    TLL LP
Sbjct: 1909 SDYITDTKSVLDQAVRILQAMVDVAADGGWLKTTLNCMHLMQMVMQARWFTDSTLLTLP 1967          
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Match: A0A7S3UVZ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVZ2_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 3.280e-12
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWDDADTLLQLPGV 183
            +DYV DT+SVLDQA+RV+N ++DIAA  GLL   +GL+RL QMVVQ   D  D L QLP V
Sbjct:  118 ADYVNDTKSVLDQALRVLNGLVDIAADEGLLAAAVGLMRLSQMVVQGRLDTDDPLGQLPHV 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8229.19585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI6.190e-5495.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BB24_9STRA7.230e-1554.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R6WZK4_MARPO1.310e-1346.25Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A6L5CM08_9INSE2.360e-1352.50Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
A0A7S2W0G5_9STRA4.470e-1344.33Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W7TU71_9STRA4.580e-1346.53Activating signal cointegrator 1 complex subunit 3... [more]
A0A0M0JAY3_9EUKA1.140e-1253.09Activating signal cointegrator 1 complex subunit 3... [more]
A0A388LPF4_CHABU2.960e-1248.24Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
L8HD92_ACACA2.960e-1261.02DEAD box RNA helicase, putative n=1 Tax=Acanthamoe... [more]
A0A7S3UVZ2_HETAK3.280e-1260.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8229contigEcto-sp13_S_contig8229:907..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.0
Seed ortholog evalue2.9e-46
Seed eggNOG ortholog2880.D7FN81
Model size333
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size330
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.8042657-CDS-Ecto-sp13_S_contig8229:906..10441681464093.8042657-CDS-Ecto-sp13_S_contig8229:906..1044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8229 907..1044 +
1681464093.8182726-CDS-Ecto-sp13_S_contig8229:1226..14181681464093.8182726-CDS-Ecto-sp13_S_contig8229:1226..1418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8229 1227..1418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8229.19585.1prot_Ecto-sp13_S_contig8229.19585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8229 907..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8229.19585.1

>prot_Ecto-sp13_S_contig8229.19585.1 ID=prot_Ecto-sp13_S_contig8229.19585.1|Name=mRNA_Ecto-sp13_S_contig8229.19585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
SDYVTDTRSVLDQAVRVINAMLDIAAGFGLLETTLGLLRLHQMVVQAAWD
DADTLLQLPGVGPTQAARLRSKRVSTLRELALRGEAAAKRLLESSGLAPA
DGSGGRGRGG
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mRNA from alignment at Ecto-sp13_S_contig8229:907..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8229.19585.1 ID=mRNA_Ecto-sp13_S_contig8229.19585.1|Name=mRNA_Ecto-sp13_S_contig8229.19585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8229:907..1419+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACTACGTGACGGACACGAGGAGCGTGCTCGACCAGGCCGTCCGCGT CATCAACGCCATGCTCGACATCGCCGCCGGCTTCGGCCTCCTGGAGACCA CGCTGGGACTCCTCCGCCTGCACCAGATGGTGGTTCAGGTGCGCCAACTT TTTTTCCCGCATGGTTTTGATCACACGGCGCGTAAACAATGTGGTCATGC AGTGGGCTGCACTAACGGAGGCACCTCTGACTGATGTTCAAGCCAAGAAG GTGTTTGTCTCAAACAGAACTGTTCTGCCCCCCGTTCCTCCATCCACCAC CCCCAACCCCTCTCATAAAGGCGGCATGGGACGACGCGGACACCTTGCTC CAGCTCCCTGGTGTGGGCCCCACGCAGGCCGCGCGCCTCCGTTCCAAGCG CGTGTCCACGCTGCGCGAGCTTGCTCTTCGCGGAGAGGCTGCTGCCAAAA GGCTCCTGGAAAGTTCCGGCCTAGCGCCAGCGGACGGTAGCGGTGGGAGG GGACGTGGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8229:907..1419+

>mRNA_Ecto-sp13_S_contig8229.19585.1 ID=mRNA_Ecto-sp13_S_contig8229.19585.1|Name=mRNA_Ecto-sp13_S_contig8229.19585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8229:907..1419+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACTACGTGACGGACACGAGGAGCGTGCTCGACCAGGCCGTCCGCGT
CATCAACGCCATGCTCGACATCGCCGCCGGCTTCGGCCTCCTGGAGACCA
CGCTGGGACTCCTCCGCCTGCACCAGATGGTGGTTCAGGCGGCATGGGAC
GACGCGGACACCTTGCTCCAGCTCCCTGGTGTGGGCCCCACGCAGGCCGC
GCGCCTCCGTTCCAAGCGCGTGTCCACGCTGCGCGAGCTTGCTCTTCGCG
GAGAGGCTGCTGCCAAAAGGCTCCTGGAAAGTTCCGGCCTAGCGCCAGCG
GACGGTAGCGGTGGGAGGGGACGTGGTGGA
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