mRNA_Ecto-sp13_S_contig8227.19584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8227.19584.1
Unique NamemRNA_Ecto-sp13_S_contig8227.19584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8227.19584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8227contigEcto-sp13_S_contig8227:2936..3596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size661
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.70426-UTR-Ecto-sp13_S_contig8227:2935..31511681464093.70426-UTR-Ecto-sp13_S_contig8227:2935..3151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8227 2936..3151 +
1681464093.7234871-UTR-Ecto-sp13_S_contig8227:3493..35961681464093.7234871-UTR-Ecto-sp13_S_contig8227:3493..3596Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8227 3494..3596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.714661-CDS-Ecto-sp13_S_contig8227:3151..34931681464093.714661-CDS-Ecto-sp13_S_contig8227:3151..3493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8227 3152..3493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8227.19584.1prot_Ecto-sp13_S_contig8227.19584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8227 3152..3493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8227.19584.1

>prot_Ecto-sp13_S_contig8227.19584.1 ID=prot_Ecto-sp13_S_contig8227.19584.1|Name=mRNA_Ecto-sp13_S_contig8227.19584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MFGLHGLLLNFCANVSKPLSSRRGRGGVEGKNTCLLRVSRRLFMGGDTHH
FMIFMWRFALFDSSGEKFFSLAISQMVRKSGGRAKLYCVVHAACCHREGR
HACMCKVSYRFIV*
back to top

mRNA from alignment at Ecto-sp13_S_contig8227:2936..3596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8227.19584.1 ID=mRNA_Ecto-sp13_S_contig8227.19584.1|Name=mRNA_Ecto-sp13_S_contig8227.19584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8227:2936..3596+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGACTGCGATGACTGCACCCCGTGCCCCTAGCTTCCCCGCGAGAAC
CATGTAACCGTCACGAAGTTTGGTGGCTACGGATTGTTCTCAGGGCGTTC
GTTTCGCGGCGGTGTGGGTGCCGTAAAGGCTGCCCTGACGTTTCATTTTC
CCAGGGAACGTTTTTACACGAAGGGAAATGCCGATGGCCATGTAGCTTGT
AACAACTAGATATTTCATGTTTGGATTACATGGGCTTTTGTTGAACTTTT
GTGCGAACGTCAGCAAGCCGTTATCATCGCGACGCGGCAGGGGTGGCGTA
GAGGGAAAGAACACATGCCTATTGAGAGTCAGCCGCCGGCTTTTTATGGG
CGGGGATACGCATCATTTTATGATATTTATGTGGAGGTTTGCATTGTTCG
ATTCCTCCGGCGAAAAGTTCTTCTCCCTGGCGATTTCGCAGATGGTGAGA
AAATCAGGGGGAAGGGCGAAATTATACTGCGTTGTGCATGCGGCTTGTTG
TCACCGTGAAGGGCGTCATGCATGCATGTGTAAAGTGTCCTATCGATTTA
TCGTTTGACGTTTCGTGGATTGATGCGTTGTCTTTAGTCTTGACCATTAC
GCTTTTTTTGTGGGCTGATGCTTGATGGATGTATTGTTTGACTCATGGGA
GTGACTTCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8227:2936..3596+

>mRNA_Ecto-sp13_S_contig8227.19584.1 ID=mRNA_Ecto-sp13_S_contig8227.19584.1|Name=mRNA_Ecto-sp13_S_contig8227.19584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8227:2936..3596+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGGATTACATGGGCTTTTGTTGAACTTTTGTGCGAACGTCAGCAA
GCCGTTATCATCGCGACGCGGCAGGGGTGGCGTAGAGGGAAAGAACACAT
GCCTATTGAGAGTCAGCCGCCGGCTTTTTATGGGCGGGGATACGCATCAT
TTTATGATATTTATGTGGAGGTTTGCATTGTTCGATTCCTCCGGCGAAAA
GTTCTTCTCCCTGGCGATTTCGCAGATGGTGAGAAAATCAGGGGGAAGGG
CGAAATTATACTGCGTTGTGCATGCGGCTTGTTGTCACCGTGAAGGGCGT
CATGCATGCATGTGTAAAGTGTCCTATCGATTTATCGTTTGA
back to top