mRNA_Ecto-sp13_S_contig12347.1958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12347.1958.1
Unique NamemRNA_Ecto-sp13_S_contig12347.1958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.490e-62
Identity = 116/165 (70.30%), Postives = 126/165 (76.36%), Query Frame = 1 
Query:  157 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIRNWIAATGITVLVDIV 627
            H  R+  S ++L   LF  S      + ++ L   +         QISMAKMYRP PKV+HSHQHVSS TIDLC LRNTAAVKIQTLVRMYQA QRAVRRQEVV W+ P V+SMRKRLTFRAYTCLIVFTASVAWINLCYV LYDGPAIRNWIAATGI VLVDIV
Sbjct:  699 HGMRNAASSTALYGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIV 863
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: D7FLP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP9_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 9.310e-62
Identity = 106/150 (70.67%), Postives = 118/150 (78.67%), Query Frame = 1 
Query:  157 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIR 582
            H  R+  S ++L   LF  S +    + ++ L   +         QISMAKMYRP PKV+HSHQHVSSSTIDLC LRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW+CPRVKSMR+RLTFRAY CLIVFTASVAWINLCYVV+YDGPAIR
Sbjct:  125 HGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYACLIVFTASVAWINLCYVVMYDGPAIR 274
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 3.170e-57
Identity = 107/150 (71.33%), Postives = 119/150 (79.33%), Query Frame = 1 
Query:  157 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIR 582
            H  R+  S ++L   LF  S +    + ++ L   +         QISMAKMYRP PKV+HSHQHVSSSTIDLC LRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW+CPRVKSMR+RLTFRAYTCLIVFTASVAWINLCYVV+YDGPAIR
Sbjct: 1633 HGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYTCLIVFTASVAWINLCYVVMYDGPAIR 1782
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE5.490e-6270.30GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLP9_ECTSI9.310e-6270.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4X3_ECTSI3.170e-5771.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12347contigEcto-sp13_S_contig12347:2219..3675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.1
Seed ortholog evalue1.6e-50
Seed eggNOG ortholog2880.D7G4X3
Model size629
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size627
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.1785414-CDS-Ecto-sp13_S_contig12347:2218..26371681462657.1785414-CDS-Ecto-sp13_S_contig12347:2218..2637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12347 2219..2637 +
1681462657.1898613-CDS-Ecto-sp13_S_contig12347:2977..31391681462657.1898613-CDS-Ecto-sp13_S_contig12347:2977..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12347 2978..3139 +
1681462657.1979718-CDS-Ecto-sp13_S_contig12347:3628..36741681462657.1979718-CDS-Ecto-sp13_S_contig12347:3628..3674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12347 3629..3674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12347.1958.1prot_Ecto-sp13_S_contig12347.1958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12347 2219..3674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12347.1958.1

>prot_Ecto-sp13_S_contig12347.1958.1 ID=prot_Ecto-sp13_S_contig12347.1958.1|Name=mRNA_Ecto-sp13_S_contig12347.1958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
CAPSGVLQAQPEKCGCRQYSGGAGSAKHCESTFFRGAVQPLPQAWSLWHM
HRHRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVPQISMAKMYRPS
PKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW
RCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIRNWIAAT
GITVLVDIV
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mRNA from alignment at Ecto-sp13_S_contig12347:2219..3675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12347.1958.1 ID=mRNA_Ecto-sp13_S_contig12347.1958.1|Name=mRNA_Ecto-sp13_S_contig12347.1958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12347:2219..3675+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCTCCGTCGGGTGTGCTTCAAGCTCAGCCGGAAAAGTGCGGTTGTCG
GCAGTACAGCGGGGGTGCAGGCAGCGCGAAGCATTGTGAAAGTACTTTCT
TTCGCGGCGCGGTTCAGCCACTACCGCAGGCATGGAGTCTGTGGCATATG
CACCGCCATCGCGCCCGATCGGTTGTGTCTCGATCTTCCTTGAAAGCTCC
TCTGTTCCCCTCCTCTCACTTGTTCCGGGTGCGTGCTCGCCGTTCTTCTT
TATATGATGTTGTGCCCCAGATATCGATGGCCAAAATGTACCGGCCGTCG
CCCAAGGTGAACCACAGCCACCAGCACGTCAGCTCCTCGACCATCGACCT
TTGTTTTTTGCGCAACACGGCTGCGGTAAAGATTCAGACCCTGGTGCGAA
TGTACCAAGCCCATCAGAGGTATGAATAAAACATATTCACGTCTAGTGCA
TAAAAGAGAACTGAGATTTCGTCATCCACGGGAAGATTTTCATTTTCATC
ACATACAACGTCTTGTTGCTGTCGTCAGAATTCCGGTGTCGCCACGACAA
CAACAACATTCGAATGTTTACAATGCTGACATGGGTAGTACTGCTCGTGG
AATTGGGCAGATCGATCAGGGAGTGTAGAACACCATGACGAATGAATATG
AATGATAAATTGTCACCCTTACTTCCGGGTACTAATGATGAAATGCATGT
GCTCGCTGTCACTGACGTGTGCTGATTCACCAACAACTACTGGGGCTGCT
GTCACGAAGGGCTGTTCGGCGCCAAGAAGTGGTCGTATGGCGGTGTCCTC
GCGTCAAAAGCATGCGAAAACGACTGACGTTTCGGGCCTACACATGCCTC
ATCGTTTTCACCGCGTCGGTCGCATGGATCAACCTCTGCTACGTGGTCTT
GTACGATGGTCCTGCTATACGGTGCGGGGACTGCCACAATTTCCGATAGT
GGCAACGTGTTTGTGTAGTGCCGCTCGCAGGCCTGACGCGCACGAGACGT
CGAACAGCTCCTCAGGCTCCCTCTACGCGTCCACCAATTTTTCAAGCCGG
AACTTTCTTCGGCTCTGAACTTTCCGAGCGGACGCTCGACGGGTCCTTCT
CACTATCGTCATGGGCCTTGCTCGATTTTCTCCTAGCACAATGCTCCACT
CTTTTTGACAACAACGAGTTTGTTTGCCAGATCTCTCTCTTGCCCGAAAT
GTTCCGGGGTTGGGTGATGTCCAGGTTTGCGCCATGGTGTTTTTTCATGT
AGGCAACTGAGTGGACTGTGTCAGCGGCGAGAAGTAGCGAGTAGGGGATC
TGGATGACTAAACGCACTTCGCCCTACACTTCGCCAAGGTTTCATCTCTT
ATCGACAAGGCACCATTGCCACCATCTGTTACCTCCTCCTGCGCTCGATT
CTCCGTGCAGGAACTGGATTGCAGCAACCGGAATAACTGTTTTGGTCGAC
ATTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12347:2219..3675+

>mRNA_Ecto-sp13_S_contig12347.1958.1 ID=mRNA_Ecto-sp13_S_contig12347.1958.1|Name=mRNA_Ecto-sp13_S_contig12347.1958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12347:2219..3675+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCTCCGTCGGGTGTGCTTCAAGCTCAGCCGGAAAAGTGCGGTTGTCG
GCAGTACAGCGGGGGTGCAGGCAGCGCGAAGCATTGTGAAAGTACTTTCT
TTCGCGGCGCGGTTCAGCCACTACCGCAGGCATGGAGTCTGTGGCATATG
CACCGCCATCGCGCCCGATCGGTTGTGTCTCGATCTTCCTTGAAAGCTCC
TCTGTTCCCCTCCTCTCACTTGTTCCGGGTGCGTGCTCGCCGTTCTTCTT
TATATGATGTTGTGCCCCAGATATCGATGGCCAAAATGTACCGGCCGTCG
CCCAAGGTGAACCACAGCCACCAGCACGTCAGCTCCTCGACCATCGACCT
TTGTTTTTTGCGCAACACGGCTGCGGTAAAGATTCAGACCCTGGTGCGAA
TGTACCAAGCCCATCAGAGGGCTGTTCGGCGCCAAGAAGTGGTCGTATGG
CGGTGTCCTCGCGTCAAAAGCATGCGAAAACGACTGACGTTTCGGGCCTA
CACATGCCTCATCGTTTTCACCGCGTCGGTCGCATGGATCAACCTCTGCT
ACGTGGTCTTGTACGATGGTCCTGCTATACGGAACTGGATTGCAGCAACC
GGAATAACTGTTTTGGTCGACATTGTG
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