mRNA_Ecto-sp13_S_contig8224.19580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: D8LGP2_ECTSI (LIP1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP2_ECTSI) HSP 1 Score: 277 bits (708), Expect = 7.640e-91 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 1
Query: 1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESGNNGRSSATAS 417
MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGN VPGNTLPTVGCSVDVKL AGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGIS+LG+SGNNGRSSATAS
Sbjct: 1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNGVPGNTLPTVGCSVDVKLLAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISILGKSGNNGRSSATAS 139
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A6H5JCT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT8_9PHAE) HSP 1 Score: 265 bits (677), Expect = 2.880e-88 Identity = 130/138 (94.20%), Postives = 131/138 (94.93%), Query Frame = 1
Query: 1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESGNNGRSSATA 414
MDASAGKNFDPHHAR+LVVGPMAAGKTTLVHSFCHGG GN VPGN LPTVGCSVDVKL AGGHPNRSIEFWDVGG PDAALARGMFFEGCEAAGVLLVYDVS PRSLRDLRVWVAELDSAGISVLGES NNGRSSATA
Sbjct: 1 MDASAGKNFDPHHARILVVGPMAAGKTTLVHSFCHGGVGNGVPGNRLPTVGCSVDVKLLAGGHPNRSIEFWDVGGRPDAALARGMFFEGCEAAGVLLVYDVSTPRSLRDLRVWVAELDSAGISVLGESDNNGRSSATA 138
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: E9HD57_DAPPU (Uncharacterized protein n=4 Tax=Daphnia TaxID=6668 RepID=E9HD57_DAPPU) HSP 1 Score: 75.5 bits (184), Expect = 8.230e-14 Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 22 NFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLF-----AGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
+ D R++V+G GKT+L+H+ CHG ++ N T+GCSVDVKL +E WDVGGS R +F+ A G++LV+D++ +S +LR W+AE+
Sbjct: 3 SIDIDKVRIIVIGDSGVGKTSLIHTLCHGE--PII--NPTWTIGCSVDVKLHEYREGTSAQKTFFVELWDVGGSSGHKNTRSVFYT--PAHGIILVHDLTNRKSEGNLRKWLAEV 111
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A812MU47_9DINO (RABC2A protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MU47_9DINO) HSP 1 Score: 66.6 bits (161), Expect = 3.680e-10 Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 28 DPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
D + +++ +G + GK+TLVHSFC G +VV PTVG VK+ + + WD G R F++ EA GV+LV+DV+ RS ++L W E+
Sbjct: 18 DVINLKLMTLGDVGVGKSTLVHSFCADG--DVVLEAGEPTVGADFKVKMLKHAGKDFRVNIWDASGDLKFIDVRNEFYK--EAQGVVLVFDVTSKRSFQNLEKWTDEV 121
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7S4M558_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M558_9EUKA) HSP 1 Score: 64.3 bits (155), Expect = 1.410e-9 Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 40 ARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEF--WDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
A++ VVGP AGKT+LV +FC GG G T PT G VD +L ++ + F WD G+P A ++ E G++LVYD + P +L + W+ ++
Sbjct: 43 AKIAVVGPAGAGKTSLVQAFCQGG---AFGGTTSPTFG--VDFRLHTMAVDSKQLRFHLWDTTGAPRFASITHAYYRVAE--GIVLVYDATDPAALDHVGGWLDQV 141
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A151ZE60_9MYCE (Rab GTPase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZE60_9MYCE) HSP 1 Score: 62.4 bits (150), Expect = 4.430e-9 Identity = 32/122 (26.23%), Postives = 59/122 (48.36%), Query Frame = 1
Query: 22 NFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESG 387
N DP ++LVVG +A GKT+++ +C+ N G PT+G K G+ ++ WD+ G ++F+ + G ++V+D + P + + W ++D+ + GE G
Sbjct: 15 NEDPISLKILVVGKLACGKTSIIQRYCN----NDFQGRYKPTIGVDFQTKEIEVGNRRVILQLWDIAGQERFGHMTRVYFQNAD--GAIVVFDATRPGTFTGAKEWKDDIDNCFPAAEGEEG 130
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7J6L878_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6L878_PEROL) HSP 1 Score: 59.3 bits (142), Expect = 4.190e-8 Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 1
Query: 7 ASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
A++ +++D AR+LV+G A GK++L+ FC N N + T+G VK ++ WD G ++ A GVLL+YD++ P+S +++ WV LD
Sbjct: 15 AASDESYDAT-ARILVLGDSAVGKSSLLMRFCE----NRFDSNFVITIGVDFRVKTINIQDREVRLQIWDTAGQERFRTITPAYYRN--AMGVLLIYDMTDPKSFKNVDYWVRNLD 123
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: UPI001C046546 (EF-hand calcium-binding domain-containing protein 4B n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C046546) HSP 1 Score: 60.5 bits (145), Expect = 6.010e-8 Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 43 RVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSA 360
+V++VG + GKT+L+ SFC G P +T TVG VK + +++ WD G FF +A GV+++YDV++ S +D+R W+ + A
Sbjct: 603 KVVLVGNSSVGKTSLLRSFCEG---RFHP-STTATVGIDYSVKTLTLDNMQIAMQLWDTAGQERYRSITKQFFR--KADGVVVMYDVTVEESFKDVRPWLINVQEA 702
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7J6LHD6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6LHD6_PEROL) HSP 1 Score: 59.3 bits (142), Expect = 7.410e-8 Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 1
Query: 7 ASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
A++ +++D AR+LV+G A GK++L+ FC N N + T+G VK ++ WD G ++ A GVLL+YD++ P+S +++ WV LD
Sbjct: 15 AASDESYDAT-ARILVLGDSAVGKSSLLMRFCE----NRFDSNFVITIGVDFRVKTINIQDREVRLQIWDTAGQERFRTITPAYYRN--AMGVLLIYDMTDPKSFKNVDYWVRNLD 123
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7S4GJL6_9EUGL (Ras-related protein Rab n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJL6_9EUGL) HSP 1 Score: 58.5 bits (140), Expect = 1.080e-7 Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 1
Query: 43 RVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
+VLVVG M GKT+L+ + H N+ N T+G +K H ++ WD+ G ++++ EA G L+V+D++ P SL W ++D
Sbjct: 13 KVLVVGDMGVGKTSLIKRYVH----NIFTPNYKATIGVDFGLKELHWEHNTIRVQLWDIAGQERFGNLTRVYYK--EAVGALVVHDITKPDSLEAATKWKNDID 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8224.19580.1 >prot_Ecto-sp13_S_contig8224.19580.1 ID=prot_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVback to top mRNA from alignment at Ecto-sp13_S_contig8224:5878..6996+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8224.19580.1 ID=mRNA_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:5878..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8224:5878..6996+ >mRNA_Ecto-sp13_S_contig8224.19580.1 ID=mRNA_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:5878..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |